Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62001702 Chenopodium quinoa HOM05D004480 ORTHO05D005546 1.6e-222 775.8 401 100.0
AUR62020079 Chenopodium quinoa HOM05D004480 ORTHO05D005546 2.0e-167 592.8 446 75.1
Hund12181 Selenicereus undatus HOM05D004480 ORTHO05D005546 6.1e-161 571.2 470 67.4
Hma1.2p1_0513F.1_g169740 Hydrangea macrophylla HOM05D004480 ORTHO05D005546 1.7e-155 553.1 474 65.6
Thecc.05G221800 Theobroma cacao HOM05D004480 ORTHO05D005546 9.4e-154 547.4 464 64.7
Sc03g0007800 Simmondsia chinensis HOM05D004480 ORTHO05D005546 1.2e-153 547.0 454 67.0
SalBow1G2458 Salvia bowleyana HOM05D004480 ORTHO05D005546 1.4e-152 543.5 465 64.7
Gohir.A08G013400 Gossypium hirsutum HOM05D004480 ORTHO05D005546 3.0e-152 542.3 462 64.7
Gohir.D08G023800 Gossypium hirsutum HOM05D004480 ORTHO05D005546 6.8e-152 541.2 462 64.7
Gorai.004G019100 Gossypium raimondii HOM05D004480 ORTHO05D005546 1.5e-151 540.0 462 64.3
Duzib128G0969 Durio zibethinus HOM05D004480 ORTHO05D005546 2.0e-151 539.7 427 67.0
Manes.17G005700 Manihot esculenta HOM05D004480 ORTHO05D005546 2.6e-151 539.3 473 63.6
CiPaw.01G203500 Carya illinoinensis HOM05D004480 ORTHO05D005546 2.8e-150 535.8 476 63.7
MSTRG.22059 Avicennia marina HOM05D004480 ORTHO05D005546 1.8e-149 533.1 490 60.4
Cc03_g16200 Coffea canephora HOM05D004480 ORTHO05D005546 2.4e-149 532.7 469 63.3
PGR083G0026 Punica granatum HOM05D004480 ORTHO05D005546 2.4e-149 532.7 465 64.1
GSVIVG01038269001 Vitis vinifera HOM05D004480 ORTHO05D005546 2.4e-149 532.7 472 63.3
Actinidia18384 Actinidia chinensis HOM05D004480 ORTHO05D005546 4.1e-149 531.9 467 63.4
CsaV3_3G003300 Cucumis sativus L. HOM05D004480 ORTHO05D005546 5.4e-149 531.6 477 63.1
Migut.N03010 Erythranthe guttata HOM05D004480 ORTHO05D005546 7.0e-149 531.2 467 64.0
CSS0010781 Camellia sinensis var. sinensis HOM05D004480 ORTHO05D005546 9.1e-149 530.8 471 62.6
PGR119G0799 Punica granatum HOM05D004480 ORTHO05D005546 1.6e-148 530.0 465 63.9
QL11p020579 Quercus lobata HOM05D004480 ORTHO05D005546 2.7e-148 529.3 469 63.1
MELO3C013997.2 Cucumis melo HOM05D004480 ORTHO05D005546 3.5e-148 528.9 477 62.7
PGSC0003DMG400021321 Solanum tuberosum HOM05D004480 ORTHO05D005546 5.9e-148 528.1 461 62.5
Prupe.5G084300 Prunus persica HOM05D004480 ORTHO05D005546 1.0e-147 527.3 490 61.0
SGA_v2.0_scaffold25G11023 Striga asiatica HOM05D004480 ORTHO05D005546 1.3e-147 526.9 486 59.9
Peaxi162Scf00586g00512 Petunia axillaris HOM05D004480 ORTHO05D005546 1.7e-147 526.6 423 66.9
Cfa008538 Carpinus fangiana HOM05D004480 ORTHO05D005546 2.2e-147 526.2 476 61.1
MD01G1035500 Malus domestica HOM05D004480 ORTHO05D005546 2.2e-147 526.2 472 62.7
SGA_v2.0_scaffold19G08907 Striga asiatica HOM05D004480 ORTHO05D005546 5.0e-147 525.0 477 61.4
arahy.Tifrunner.gnm1.ann1.0BX3U4 Arachis hypogaea HOM05D004480 ORTHO05D005546 6.5e-147 524.6 449 63.3
Sopen01g003100 Solanum pennellii HOM05D004480 ORTHO05D005546 8.5e-147 524.2 464 61.2
Potri.017G001100 Populus trichocarpa HOM05D004480 ORTHO05D005546 1.5e-146 523.5 469 62.3
Ciclev10008180m.g Citrus clementina HOM05D004480 ORTHO05D005546 1.9e-146 523.1 474 62.2
Nitab4.5_0002844g0040 Nicotiana tabacum HOM05D004480 ORTHO05D005546 3.2e-146 522.3 470 61.5
Solyc01g007120.3 Solanum lycopersicum HOM05D004480 ORTHO05D005546 3.2e-146 522.3 459 61.7
COL.COLO4_23990 Corchorus olitorius HOM05D004480 ORTHO05D005546 4.2e-146 521.9 420 66.2
vmacro20035 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 7.2e-146 521.2 481 61.3
FAN12G3644 Fragaria x ananassa HOM05D004480 ORTHO05D005546 9.4e-146 520.8 437 64.3
FvH4_4g10760 Fragaria vesca HOM05D004480 ORTHO05D005546 1.6e-145 520.0 437 64.3
Nitab4.5_0002686g0020 Nicotiana tabacum HOM05D004480 ORTHO05D005546 1.6e-145 520.0 461 61.8
Nn7g35785 Nelumbo nucifera HOM05D004480 ORTHO05D005546 2.1e-145 519.6 472 61.9
BcaB01g00536 Brassica carinata HOM05D004480 ORTHO05D005546 2.7e-145 519.2 460 62.8
FAN01G1951 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.7e-145 519.2 466 62.0
RcHm_v2.0_Chr1g0334711 Rosa chinensis HOM05D004480 ORTHO05D005546 3.6e-145 518.8 470 61.1
Atru.chr11.1453 Acer truncatum HOM05D004480 ORTHO05D005546 4.7e-145 518.5 468 60.9
Atru.chr11.1483 Acer truncatum HOM05D004480 ORTHO05D005546 4.7e-145 518.5 468 60.9
Eucgr.H00240 Eucalyptus grandis HOM05D004480 ORTHO05D005546 4.7e-145 518.5 463 61.1
MD15G1320300 Malus domestica HOM05D004480 ORTHO05D005546 6.1e-145 518.1 472 61.9
A03p48230 Brassica napus HOM05D004480 ORTHO05D005546 8.0e-145 517.7 460 62.6
RcHm_v2.0_Chr7g0210541 Rosa chinensis HOM05D004480 ORTHO05D005546 8.0e-145 517.7 470 60.6
Ca_17076_v3 Cicer arietinum L. HOM05D004480 ORTHO05D005546 1.8e-144 516.5 459 62.1
THA.LOC104827565 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 1.8e-144 516.5 467 60.6
Sed0006001 Sechium edule HOM05D004480 ORTHO05D005546 2.3e-144 516.2 477 61.4
FAN03G0050 Fragaria x ananassa HOM05D004480 ORTHO05D005546 3.0e-144 515.8 476 60.3
Lalb_Chr08g0233091 Lupinus albus HOM05D004480 ORTHO05D005546 8.8e-144 514.2 466 62.4
Glyma.18G043300 Glycine max HOM05D004480 ORTHO05D005546 1.2e-143 513.8 462 61.7
BraA03t13931Z Brassica rapa HOM05D004480 ORTHO05D005546 2.0e-143 513.1 466 62.4
C07p46260 Brassica napus HOM05D004480 ORTHO05D005546 4.4e-143 511.9 458 62.4
CANSAT21G2297 Cannabis sativa HOM05D004480 ORTHO05D005546 4.4e-143 511.9 473 60.5
MBI07_g30868_MAGBIO Magnolia biondii HOM05D004480 ORTHO05D005546 7.5e-143 511.1 501 58.3
HanXRQChr14g0458331 Helianthus annuus HOM05D004480 ORTHO05D005546 9.8e-143 510.8 462 61.0
BcaC06g33042 Brassica carinata HOM05D004480 ORTHO05D005546 1.3e-142 510.4 458 62.7
BraA01t02261Z Brassica rapa HOM05D004480 ORTHO05D005546 1.3e-142 510.4 470 60.4
BcaNung06395 Brassica carinata HOM05D004480 ORTHO05D005546 1.7e-142 510.0 458 62.2
A01p23550 Brassica napus HOM05D004480 ORTHO05D005546 1.7e-142 510.0 459 61.7
C01p29210 Brassica napus HOM05D004480 ORTHO05D005546 1.7e-142 510.0 458 62.2
vmacro00734 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 4.9e-142 508.4 513 57.9
Lj1g0018422 Lotus japonicus HOM05D004480 ORTHO05D005546 6.3e-142 508.1 462 61.0
Phvul.001G227600 Phaseolus vulgaris HOM05D004480 ORTHO05D005546 1.1e-141 507.3 462 60.6
A09p44300 Brassica napus HOM05D004480 ORTHO05D005546 1.4e-141 506.9 457 61.9
HanXRQChr15g0465141 Helianthus annuus HOM05D004480 ORTHO05D005546 1.4e-141 506.9 462 60.8
Sp5g10950 Schrenkiella parvula HOM05D004480 ORTHO05D005546 3.1e-141 505.8 466 60.3
Dinv41802 Davidia involucrata HOM05D004480 ORTHO05D005546 5.4e-141 505.0 331 76.7
BolC1t02850H Brassica oleracea HOM05D004480 ORTHO05D005546 9.2e-141 504.2 475 60.0
BraA09t39892Z Brassica rapa HOM05D004480 ORTHO05D005546 9.2e-141 504.2 464 61.0
arahy.Tifrunner.gnm1.ann1.JT43NG Arachis hypogaea HOM05D004480 ORTHO05D005546 3.5e-140 502.3 433 62.8
SalBow6G1632 Salvia bowleyana HOM05D004480 ORTHO05D005546 4.5e-140 501.9 469 61.6
AL5G31690 Arabidopsis lyrata HOM05D004480 ORTHO05D005546 5.9e-140 501.5 455 60.9
Oeu019179.1 Olea europaea HOM05D004480 ORTHO05D005546 5.9e-140 501.5 524 55.2
BcaNung00392 Brassica carinata HOM05D004480 ORTHO05D005546 7.7e-140 501.1 459 61.0
Carub.0005s1764 Capsella rubella HOM05D004480 ORTHO05D005546 1.0e-139 500.7 464 59.5
BolC7t45142H Brassica oleracea HOM05D004480 ORTHO05D005546 1.7e-139 500.0 455 60.9
THA.LOC104802357 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 1.7e-139 500.0 458 59.8
FAN12G1968 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.3e-139 499.6 422 64.2
TAR626G1520 Trochodendron aralioides HOM05D004480 ORTHO05D005546 2.9e-139 499.2 504 56.9
TWI74G1000 Tripterygium wilfordii HOM05D004480 ORTHO05D005546 3.8e-139 498.8 472 58.5
Medtr4g094615 Medicago truncatula HOM05D004480 ORTHO05D005546 5.0e-139 498.4 462 60.2
Os01g0888700 Oryza sativa ssp. japonica HOM05D004480 ORTHO05D005546 5.0e-139 498.4 494 58.3
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 4.3e-138 495.4 461 59.9
TPR.G4936 Trifolium pratense HOM05D004480 ORTHO05D005546 4.3e-138 495.4 463 61.1
TAR623G1647 Trochodendron aralioides HOM05D004480 ORTHO05D005546 5.6e-138 495.0 504 56.7
CARHR160850 Cardamine hirsuta HOM05D004480 ORTHO05D005546 1.2e-137 493.8 467 59.1
Dinv39175 Davidia involucrata HOM05D004480 ORTHO05D005546 2.8e-137 492.7 450 61.3
Sed0005158 Sechium edule HOM05D004480 ORTHO05D005546 1.4e-136 490.3 384 67.2
ATR0743G007 Amborella trichopoda HOM05D004480 ORTHO05D005546 2.3e-136 489.6 487 57.1
PSO675G8718 Papaver somniferum HOM05D004480 ORTHO05D005546 3.0e-136 489.2 443 62.1
PSO732G0488 Papaver somniferum HOM05D004480 ORTHO05D005546 1.5e-135 486.9 443 61.6
Thhalv10010355m.g Eutrema salsugineum HOM05D004480 ORTHO05D005546 2.0e-135 486.5 466 58.2
Sabra17G0005500 Salix brachista HOM05D000001 ORTHO05D005546 3.4e-135 485.7 387 66.9
VMungo1383G0315 Vigna mungo HOM05D004480 ORTHO05D005546 2.2e-134 483.0 462 59.3
FvH4_7g06440 Fragaria vesca HOM05D004480 ORTHO05D005546 2.9e-134 482.6 351 70.4
Cpa.g.sc9.237 Carica papaya HOM05D004480 ORTHO05D005546 3.7e-134 482.3 442 61.5
HanXRQChr15g0464981 Helianthus annuus HOM05D004480 ORTHO05D005546 6.4e-134 481.5 331 72.5
Zm00001eb145320 Zea mays HOM05D004480 ORTHO05D005546 2.0e-132 476.5 477 57.4
VMungo1309G1911 Vigna mungo HOM05D004480 ORTHO05D005546 5.9e-132 474.9 460 59.1
Zm00001eb365940 Zea mays HOM05D004480 ORTHO05D005546 7.8e-132 474.6 483 57.3
DCAR_011737 Daucus carota HOM05D004480 ORTHO05D005546 1.0e-131 474.2 516 52.9
Rhsim09G0001300 Rhododendron simsii HOM05D004480 ORTHO05D005546 2.3e-131 473.0 431 61.7
ECA248G1292 Erigeron canadensis HOM05D004480 ORTHO05D005546 3.9e-131 472.2 457 59.5
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 4.3e-130 468.8 444 59.2
Glyma.11G213400 Glycine max HOM05D004480 ORTHO05D005546 5.6e-130 468.4 331 70.7
AT3G51270 Arabidopsis thaliana HOM05D004480 ORTHO05D005546 9.5e-130 467.6 466 56.0
Psat7g090480 Pisum sativum HOM05D004480 ORTHO05D005546 2.3e-128 463.0 351 68.4
C08p26540 Brassica napus HOM05D004480 ORTHO05D005546 1.2e-127 460.7 467 57.8
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 4.9e-126 455.3 461 57.0
BolC8t50268H Brassica oleracea HOM05D004480 ORTHO05D005546 1.4e-125 453.8 482 56.0
BcaC09g50090 Brassica carinata HOM05D004480 ORTHO05D005546 2.7e-124 449.5 329 70.5
Lju124A7T24 Lonicera japonica HOM05D004480 ORTHO05D005546 4.6e-124 448.7 254 84.3
CAN.G574.17 Capsicum annuum HOM05D004480 ORTHO05D005546 1.3e-123 447.2 428 59.3
Haze_11102 Corylus avellana HOM05D004480 ORTHO05D005546 1.7e-123 446.8 433 57.7
Oeu061379.1 Olea europaea HOM05D004480 ORTHO05D005546 3.0e-123 446.0 254 83.1
Mapoly0052s0036 Marchantia polymorpha HOM05D004480 ORTHO05D005546 2.5e-122 443.0 457 53.8
SMO203G0211 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 2.1e-121 439.9 331 67.1
unitig_62.g23773 Utricularia gibba HOM05D004480 ORTHO05D005546 3.6e-121 439.1 502 53.2
CDE09G0719 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 8.9e-120 434.5 386 61.9
Lsat_1_v5_gn_5_33821 Lactuca sativa HOM05D004480 ORTHO05D005546 8.3e-118 427.9 463 56.4
ClCG00G001030 Citrullus lanatus HOM05D004480 ORTHO05D005546 1.9e-117 426.8 316 70.3
Aqoxy2G00126 Aquilegia oxysepala HOM05D004480 ORTHO05D005546 2.5e-114 416.4 484 51.2
Duzib177G0198 Durio zibethinus HOM05D004480 ORTHO05D005546 9.5e-114 414.5 397 58.4
AagrBONN_evm.TU.Sc2ySwM_228.3019 Anthoceros agrestis HOM05D004480 ORTHO05D005546 5.2e-112 408.7 321 63.9
Pp3c20_22360 Physcomitrium patens HOM05D004480 ORTHO05D005546 6.8e-112 408.3 457 51.2
CDE09G0674 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 2.1e-105 386.7 414 55.3
CDE02G2467 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 3.6e-105 386.0 466 49.4
SHI53263 Sapria himalayana HOM05D004480 ORTHO05D005546 1.2e-103 380.9 331 60.4
CBR_g22944 Chara braunii HOM05D004480 ORTHO05D005546 7.6e-103 378.3 247 70.4
ClCG10G003270 Citrullus lanatus HOM05D004480 ORTHO05D005546 2.6e-95 353.2 567 45.1
CDE09G1409 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.7e-94 350.5 398 53.0
CDE02G0168 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.2e-92 344.4 356 54.5
PRCOL_00001861 Prasinoderma coloniale HOM05D004480 ORTHO05D005546 4.8e-89 332.4 257 61.5
MCO09G317 Micromonas commoda HOM05D004480 ORTHO05D005546 4.2e-85 319.3 334 51.2
Migut.O00494 Erythranthe guttata HOM05D004480 ORTHO05D005546 3.3e-82 309.7 402 49.3
CDE09G0134 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.4e-77 294.3 288 56.9
SEGI_41177 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 1.3e-73 281.2 387 46.5
Cre03.g159900 Chlamydomonas reinhardtii HOM05D004480 ORTHO05D005546 1.2e-63 248.1 249 54.2
Cfa009489 Carpinus fangiana HOM05D004480 ORTHO05D005546 8.2e-41 172.2 266 38.7
SMO327G0006 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 5.2e-35 152.9 120 66.7
Ciclev10020879m.g Citrus clementina HOM05D004480 ORTHO05D005546 4.4e-34 149.8 467 32.5
SEGI_14248 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 3.6e-28 130.2 81 76.5
Oeu061378.1 Olea europaea HOM05D004480 ORTHO05D005546 4.4e-18 96.7 161 41.0
Lju124A7T25 Lonicera japonica HOM05D004480 ORTHO05D005546 2.9e-17 94.0 173 41.6
HPP92_020625 Vanilla planifolia HOM05D004480 ORTHO05D005546 3.5e-15 87.0 240 34.2
ClCG00G000020 Citrullus lanatus HOM05D004480 ORTHO05D005546 3.6e-12 77.0 381 27.0
FAN07G0363 Fragaria x ananassa HOM05D004480 ORTHO05D005546 9.8e-10 68.9 108 41.7
Zm00001eb233680 Zea mays HOM05D009386 ORTHO05D011419 4.9e-09 66.6 150 36.7


User provided reference genes

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