Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62001211 Chenopodium quinoa HOM05D005035 ORTHO05D006141 4.3e-58 227.6 104 100.0
AUR62022118 Chenopodium quinoa HOM05D005035 ORTHO05D006141 9.6e-58 226.5 104 99.0
EL10Ac7g18004 Beta vulgaris HOM05D005035 ORTHO05D006141 1.4e-53 212.6 104 90.4
SGA_v2.0_scaffold30G12503 Striga asiatica HOM05D005035 ORTHO05D006141 1.9e-50 202.2 104 84.6
Migut.K01356 Erythranthe guttata HOM05D005035 ORTHO05D006141 3.3e-50 201.4 104 83.7
Lj2g0024232 Lotus japonicus HOM05D005035 ORTHO05D006141 1.3e-49 199.5 104 83.7
Peaxi162Scf00129g00821 Petunia axillaris HOM05D005035 ORTHO05D006141 1.3e-49 199.5 104 81.7
Potri.001G350900 Populus trichocarpa HOM05D005035 ORTHO05D006141 2.1e-49 198.7 104 83.7
FAN05G0554 Fragaria x ananassa HOM05D005035 ORTHO05D006141 3.6e-49 198.0 103 82.5
Solyc02g087230.3 Solanum lycopersicum HOM05D005035 ORTHO05D006141 3.6e-49 198.0 104 80.8
Sopen02g031970 Solanum pennellii HOM05D005035 ORTHO05D006141 3.6e-49 198.0 104 80.8
MSTRG.3309 Avicennia marina HOM05D005035 ORTHO05D006141 4.8e-49 197.6 104 82.7
Gohir.A07G217600 Gossypium hirsutum HOM05D005035 ORTHO05D006141 6.2e-49 197.2 104 81.7
RcHm_v2.0_Chr2g0170331 Rosa chinensis HOM05D005035 ORTHO05D006141 6.2e-49 197.2 104 82.7
TWI36G0797 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 6.2e-49 197.2 104 81.7
Glyma.13G069100 Glycine max HOM05D005035 ORTHO05D006141 8.1e-49 196.8 104 82.7
Glyma.19G013800 Glycine max HOM05D005035 ORTHO05D006141 8.1e-49 196.8 104 82.7
Ciclev10013034m.g Citrus clementina HOM05D005035 ORTHO05D006141 1.1e-48 196.4 104 80.8
FvH4_6g50060 Fragaria vesca HOM05D005035 ORTHO05D006141 1.1e-48 196.4 104 82.7
Lalb_Chr21g0319261 Lupinus albus HOM05D005035 ORTHO05D006141 1.1e-48 196.4 104 81.7
GSVIVG01032540001 Vitis vinifera HOM05D005035 ORTHO05D006141 1.1e-48 196.4 104 82.7
Manes.15G180500 Manihot esculenta HOM05D005035 ORTHO05D006141 1.4e-48 196.1 104 82.7
Manes.17G120300 Manihot esculenta HOM05D005035 ORTHO05D006141 1.4e-48 196.1 104 82.7
Rhsim10G0028000 Rhododendron simsii HOM05D005035 ORTHO05D006141 1.4e-48 196.1 103 82.5
Rhsim10G0028700 Rhododendron simsii HOM05D005035 ORTHO05D006141 1.4e-48 196.1 103 82.5
Cfa007472 Carpinus fangiana HOM05D005035 ORTHO05D006141 1.8e-48 195.7 104 82.7
Gohir.D07G224700 Gossypium hirsutum HOM05D005035 ORTHO05D006141 1.8e-48 195.7 104 80.8
Pp3c3_28450 Physcomitrium patens HOM05D005035 ORTHO05D006141 1.8e-48 195.7 100 85.0
SalBow1G8037 Salvia bowleyana HOM05D005035 ORTHO05D006141 1.8e-48 195.7 112 79.5
Sc06g0002600 Simmondsia chinensis HOM05D005035 ORTHO05D006141 1.8e-48 195.7 104 81.7
TWI56G1217 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 1.8e-48 195.7 104 81.7
Actinidia33975 Actinidia chinensis HOM05D005035 ORTHO05D006141 2.4e-48 195.3 104 80.8
MSTRG.23981 Avicennia marina HOM05D005035 ORTHO05D006141 2.4e-48 195.3 104 80.8
CAN.G206.60 Capsicum annuum HOM05D005035 ORTHO05D006141 2.4e-48 195.3 104 79.8
Nn4g22913 Nelumbo nucifera HOM05D005035 ORTHO05D006141 2.4e-48 195.3 104 81.7
Sabra16G0230300 Salix brachista HOM05D005035 ORTHO05D006141 2.4e-48 195.3 104 81.7
AL3G42320 Arabidopsis lyrata HOM05D005035 ORTHO05D006141 3.1e-48 194.9 104 81.7
AT2G04700 Arabidopsis thaliana HOM05D005035 ORTHO05D006141 3.1e-48 194.9 104 81.7
Carub.0003s2630 Capsella rubella HOM05D005035 ORTHO05D006141 3.1e-48 194.9 104 81.7
Duzib147G0557 Durio zibethinus HOM05D005035 ORTHO05D006141 3.1e-48 194.9 104 81.7
Sp7g01920 Schrenkiella parvula HOM05D005035 ORTHO05D006141 3.1e-48 194.9 104 81.7
SMO147G0038 Selaginella moellendorffii HOM05D005035 ORTHO05D006141 3.1e-48 194.9 103 80.6
Ca_04227_v3 Cicer arietinum L. HOM05D005035 ORTHO05D006141 4.0e-48 194.5 104 80.8
vmacro05790 Vaccinium macrocarpon HOM05D005035 ORTHO05D006141 4.0e-48 194.5 103 81.6
Lalb_Chr02g0159811 Lupinus albus HOM05D005035 ORTHO05D006141 5.3e-48 194.1 104 80.8
MD09G1039900 Malus domestica HOM05D005035 ORTHO05D006141 5.3e-48 194.1 104 81.7
Phvul.004G020500 Phaseolus vulgaris HOM05D005035 ORTHO05D006141 5.3e-48 194.1 104 81.7
Aa31LG9G1530 Aethionema arabicum HOM05D005035 ORTHO05D006141 6.9e-48 193.7 104 80.8
Medtr6g008220 Medicago truncatula HOM05D005035 ORTHO05D006141 6.9e-48 193.7 104 81.7
TPR.G31460 Trifolium pratense HOM05D005035 ORTHO05D006141 6.9e-48 193.7 104 81.7
TAR484G0003 Trochodendron aralioides HOM05D005035 ORTHO05D006141 6.9e-48 193.7 104 81.7
TAR629G3150 Trochodendron aralioides HOM05D005035 ORTHO05D006141 6.9e-48 193.7 104 81.7
CiPaw.03G034300 Carya illinoinensis HOM05D005035 ORTHO05D006141 9.0e-48 193.4 104 80.8
Thhalv10005082m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 9.0e-48 193.4 104 80.8
Gohir.A09G024500 Gossypium hirsutum HOM05D005035 ORTHO05D006141 9.0e-48 193.4 104 79.8
Nitab4.5_0001952g0210 Nicotiana tabacum HOM05D005035 ORTHO05D006141 9.0e-48 193.4 104 78.8
Nitab4.5_0007185g0060 Nicotiana tabacum HOM05D005035 ORTHO05D006141 9.0e-48 193.4 104 78.8
TAR371G0568 Trochodendron aralioides HOM05D005035 ORTHO05D006141 9.0e-48 193.4 104 80.8
BcaB06g27429 Brassica carinata HOM05D005035 ORTHO05D006141 1.2e-47 193.0 104 80.8
A04p12970 Brassica napus HOM05D005035 ORTHO05D006141 1.2e-47 193.0 104 80.8
BolC4t26254H Brassica oleracea HOM05D005035 ORTHO05D006141 1.2e-47 193.0 104 80.8
BraA04t16958Z Brassica rapa HOM05D005035 ORTHO05D006141 1.2e-47 193.0 104 80.8
Migut.H00159 Erythranthe guttata HOM05D005035 ORTHO05D006141 1.2e-47 193.0 104 78.8
HanXRQChr17g0548081 Helianthus annuus HOM05D005035 ORTHO05D006141 1.2e-47 193.0 104 79.8
Thhalv10027982m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 1.5e-47 192.6 104 80.8
Lalb_Chr06g0176451 Lupinus albus HOM05D005035 ORTHO05D006141 1.5e-47 192.6 104 79.8
Thecc.04G003200 Theobroma cacao HOM05D005035 ORTHO05D006141 1.5e-47 192.6 104 79.8
AagrBONN_evm.TU.Sc2ySwM_340.374 Anthoceros agrestis HOM05D005035 ORTHO05D006141 2.0e-47 192.2 104 78.8
ECA246G3539 Erigeron canadensis HOM05D005035 ORTHO05D006141 2.0e-47 192.2 104 79.8
Pp3c4_19340 Physcomitrium patens HOM05D005035 ORTHO05D006141 2.0e-47 192.2 100 84.0
Actinidia06042 Actinidia chinensis HOM05D005035 ORTHO05D006141 2.6e-47 191.8 104 79.8
Lsat_1_v5_gn_4_180660 Lactuca sativa HOM05D005035 ORTHO05D006141 2.6e-47 191.8 106 80.2
PGR083G2790 Punica granatum HOM05D005035 ORTHO05D006141 2.6e-47 191.8 104 79.8
Sp2g17120 Schrenkiella parvula HOM05D005035 ORTHO05D006141 2.6e-47 191.8 104 79.8
THA.LOC104805419 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 2.6e-47 191.8 104 80.8
MELO3C021510.2 Cucumis melo HOM05D005035 ORTHO05D006141 3.4e-47 191.4 104 79.8
CsaV3_5G037480 Cucumis sativus L. HOM05D005035 ORTHO05D006141 3.4e-47 191.4 104 79.8
PSO591G0214 Papaver somniferum HOM05D005035 ORTHO05D006141 3.4e-47 191.4 104 78.8
PSO832G3976 Papaver somniferum HOM05D005035 ORTHO05D006141 3.4e-47 191.4 104 78.8
Cc07_g02630 Coffea canephora HOM05D005035 ORTHO05D006141 4.4e-47 191.0 104 79.8
MD17G1040500 Malus domestica HOM05D005035 ORTHO05D006141 4.4e-47 191.0 104 79.8
Prupe.3G278500 Prunus persica HOM05D005035 ORTHO05D006141 4.4e-47 191.0 104 80.8
CSS0048749 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 5.8e-47 190.7 104 79.8
DCAR_011194 Daucus carota HOM05D005035 ORTHO05D006141 5.8e-47 190.7 104 79.8
Lsat_1_v5_gn_0_16560 Lactuca sativa HOM05D005035 ORTHO05D006141 5.8e-47 190.7 104 77.9
Aqoxy3G00882 Aquilegia oxysepala HOM05D005035 ORTHO05D006141 9.9e-47 189.9 104 77.9
MBI14_g12780_MAGBIO Magnolia biondii HOM05D005035 ORTHO05D006141 9.9e-47 189.9 104 77.9
Zm00001eb373700 Zea mays HOM05D005035 ORTHO05D006141 1.3e-46 189.5 101 79.2
Eucgr.J02172 Eucalyptus grandis HOM05D005035 ORTHO05D006141 2.9e-46 188.3 104 76.9
CANSAT21G0423 Cannabis sativa HOM05D005035 ORTHO05D006141 8.4e-46 186.8 104 77.9
Os09g0249900 Oryza sativa ssp. japonica HOM05D005035 ORTHO05D006141 8.4e-46 186.8 104 76.0
Mapoly0037s0068 Marchantia polymorpha HOM05D005035 ORTHO05D006141 1.1e-45 186.4 102 76.5
CDE04G0448 Ceratophyllum demersum HOM05D005035 ORTHO05D006141 3.2e-45 184.9 104 76.0
Cre03.g193950 Chlamydomonas reinhardtii HOM05D005035 ORTHO05D006141 4.2e-45 184.5 97 80.4
HPP92_003737 Vanilla planifolia HOM05D005035 ORTHO05D006141 5.4e-45 184.1 104 75.0
THA.LOC104822811 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 1.6e-44 182.6 105 77.1
QL93p0205_0142 Quercus lobata HOM05D005035 ORTHO05D006141 3.5e-44 181.4 123 67.5
Hund20034 Selenicereus undatus HOM05D005035 ORTHO05D006141 6.0e-44 180.6 91 86.8
MCO16G017 Micromonas commoda HOM05D005035 ORTHO05D006141 1.7e-43 179.1 104 73.1
Duzib264G0892 Durio zibethinus HOM05D005035 ORTHO05D006141 2.3e-43 178.7 93 82.8
Sed0002098 Sechium edule HOM05D005035 ORTHO05D006141 3.9e-43 177.9 89 85.4
FAN02G1276 Fragaria x ananassa HOM05D005035 ORTHO05D006141 5.1e-43 177.6 95 78.9
PRCOL_00001533 Prasinoderma coloniale HOM05D005035 ORTHO05D006141 6.6e-43 177.2 103 72.8
unitig_62.g23432 Utricularia gibba HOM05D005035 ORTHO05D006141 6.6e-43 177.2 89 84.3
FAN09G0974 Fragaria x ananassa HOM05D005035 ORTHO05D006141 8.7e-43 176.8 95 78.9
FAN14G3542 Fragaria x ananassa HOM05D005035 ORTHO05D006141 8.7e-43 176.8 95 78.9
ClCG00G001700 Citrullus lanatus HOM05D005035 ORTHO05D006141 2.5e-42 175.3 133 61.7
ClCG09G018640 Citrullus lanatus HOM05D005035 ORTHO05D006141 2.5e-42 175.3 133 61.7
COL.COLO4_06152 Corchorus olitorius HOM05D005035 ORTHO05D006141 3.3e-42 174.9 89 83.1
unitig_52.g17602 Utricularia gibba HOM05D005035 ORTHO05D006141 3.3e-42 174.9 89 83.1
VMungo0464G2121 Vigna mungo HOM05D005035 ORTHO05D006141 3.3e-42 174.9 140 60.0
Gorai.001G259100 Gossypium raimondii HOM05D005035 ORTHO05D006141 4.3e-42 174.5 89 82.0
Psat1g079560 Pisum sativum HOM05D005035 ORTHO05D006141 5.6e-42 174.1 91 81.3
AUR62041855 Chenopodium quinoa HOM05D005035 ORTHO05D006141 7.3e-42 173.7 129 65.9
ATR1101G065 Amborella trichopoda HOM05D005035 ORTHO05D006141 9.6e-42 173.3 90 82.2
Hma1.2p1_0375F.1_g139040 Hydrangea macrophylla HOM05D005035 ORTHO05D006141 9.6e-42 173.3 103 71.8
CBR_g4436 Chara braunii HOM05D005035 ORTHO05D006141 5.3e-40 167.5 91 78.0
AUR62026990 Chenopodium quinoa HOM05D005035 ORTHO05D006141 5.1e-35 151.0 104 72.1
QL02p078168 Quercus lobata HOM05D005035 ORTHO05D006141 1.9e-34 149.1 78 78.2
Haze_14625 Corylus avellana HOM05D005035 ORTHO05D006141 5.6e-34 147.5 105 67.6
CSS0001095 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 7.4e-34 147.1 107 66.4
CSS0000898 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 2.4e-32 142.1 111 63.1
arahy.Tifrunner.gnm1.ann1.JZED56 Arachis hypogaea HOM05D005035 ORTHO05D006141 3.1e-32 141.7 104 63.5
Gorai.006G028000 Gossypium raimondii HOM05D005035 ORTHO05D006141 8.4e-30 133.7 69 82.6
SEGI_15320 Sequoiadendron giganteum HOM05D005035 ORTHO05D006141 4.2e-29 131.3 69 81.2
arahy.Tifrunner.gnm1.ann1.IKM8ZR Arachis hypogaea HOM05D005035 ORTHO05D006141 1.6e-28 129.4 68 79.4
CARHR102650 Cardamine hirsuta HOM05D005035 ORTHO05D006141 2.7e-28 128.6 69 78.3
Atru.chr8.2413 Acer truncatum HOM05D005035 ORTHO05D006141 5.1e-27 124.4 104 58.7
AUR62032082 Chenopodium quinoa HOM05D005035 ORTHO05D006141 1.5e-26 122.9 69 78.3
C04p46660 Brassica napus HOM05D005035 ORTHO05D006141 2.1e-25 119.0 61 82.0
Rhsim08G0061500 Rhododendron simsii HOM05D005035 ORTHO05D006141 1.7e-22 109.4 64 71.9
Nn3g17009 Nelumbo nucifera HOM05D005035 ORTHO05D006141 7.9e-20 100.5 58 74.1
Oeu031509.1 Olea europaea HOM05D005035 ORTHO05D006141 8.2e-17 90.5 43 81.4
BcaB02g11482 Brassica carinata HOM05D005035 ORTHO05D006141 2.4e-16 89.0 61 59.0
Gohir.D09G023800 Gossypium hirsutum HOM05D005035 ORTHO05D006141 7.7e-15 84.0 44 81.8
BcaC04g21225 Brassica carinata HOM05D005035 ORTHO05D006141 2.1e-12 75.9 45 68.9
CSS0035672 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 4.6e-12 74.7 47 63.8
CARHR102660 Cardamine hirsuta HOM05D005035 ORTHO05D006141 1.0e-11 73.6 42 78.6
CSS0020716 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 1.4e-08 63.2 35 65.7
CSS0048463 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 4.5e-07 58.2 49 55.1
vmacro18227 Vaccinium macrocarpon HOM05D005035 ORTHO05D006141 1.0e-06 57.0 31 83.9


User provided reference genes

Program Settings