Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62000169 Chenopodium quinoa HOM05D007428 ORTHO05D009308 7.5e-52 206.8 99 100.0
AUR62039842 Chenopodium quinoa HOM05D007428 ORTHO05D009308 1.7e-51 205.7 99 99.0
EL10Ac4g10178 Beta vulgaris HOM05D007428 ORTHO05D009308 2.3e-45 185.3 99 89.9
Ciclev10023047m.g Citrus clementina HOM05D007428 ORTHO05D009308 3.2e-39 164.9 94 84.0
GSVIVG01019416001 Vitis vinifera HOM05D007428 ORTHO05D009308 1.2e-38 162.9 94 81.9
Dinv38899 Davidia involucrata HOM05D007428 ORTHO05D009308 1.6e-38 162.5 97 78.4
Potri.001G099200 Populus trichocarpa HOM05D007428 ORTHO05D009308 1.6e-38 162.5 94 81.9
Manes.02G017900 Manihot esculenta HOM05D007428 ORTHO05D009308 2.1e-38 162.2 94 81.9
Prupe.5G106400 Prunus persica HOM05D007428 ORTHO05D009308 2.1e-38 162.2 94 80.9
TAR374G0673 Trochodendron aralioides HOM05D007428 ORTHO05D009308 1.8e-37 159.1 96 77.1
Actinidia10608 Actinidia chinensis HOM05D007428 ORTHO05D009308 2.3e-37 158.7 96 76.0
Atru.chr9.2117 Acer truncatum HOM05D007428 ORTHO05D009308 1.2e-36 156.4 94 79.8
PGR031G0112 Punica granatum HOM05D007428 ORTHO05D009308 5.7e-36 154.1 98 75.5
TAR375G0610 Trochodendron aralioides HOM05D007428 ORTHO05D009308 1.3e-35 152.9 96 72.9
Duzib084G1020 Durio zibethinus HOM05D007428 ORTHO05D009308 1.7e-35 152.5 94 79.8
RcHm_v2.0_Chr7g0196601 Rosa chinensis HOM05D007428 ORTHO05D009308 1.7e-35 152.5 95 76.8
CiPaw.11G129900 Carya illinoinensis HOM05D007428 ORTHO05D009308 2.2e-35 152.1 93 78.5
Ah.06g194380 Amaranthus hybridus HOM05D007428 ORTHO05D009308 3.7e-35 151.4 170 53.5
FAN04G2816 Fragaria x ananassa HOM05D007428 ORTHO05D009308 6.3e-35 150.6 95 75.8
FAN13G2357 Fragaria x ananassa HOM05D007428 ORTHO05D009308 6.3e-35 150.6 95 75.8
FAN18G4254 Fragaria x ananassa HOM05D007428 ORTHO05D009308 6.3e-35 150.6 95 75.8
ClCG01G002350 Citrullus lanatus HOM05D007428 ORTHO05D009308 1.1e-34 149.8 96 75.0
PGSC0003DMG400005826 Solanum tuberosum HOM05D007428 ORTHO05D009308 1.1e-34 149.8 93 74.2
CSS0042206 Camellia sinensis var. sinensis HOM05D007428 ORTHO05D009308 1.4e-34 149.4 97 74.2
MELO3C005713.2 Cucumis melo HOM05D007428 ORTHO05D009308 1.4e-34 149.4 96 75.0
CsaV3_5G002410 Cucumis sativus L. HOM05D007428 ORTHO05D009308 1.4e-34 149.4 96 75.0
ATR0661G028 Amborella trichopoda HOM05D007428 ORTHO05D009308 1.8e-34 149.1 94 73.4
BcaB06g27627 Brassica carinata HOM05D007428 ORTHO05D009308 1.8e-34 149.1 94 76.6
Eucgr.D01813 Eucalyptus grandis HOM05D007428 ORTHO05D009308 2.4e-34 148.7 99 75.8
Thhalv10028001m.g Eutrema salsugineum HOM05D007428 ORTHO05D009308 2.4e-34 148.7 94 77.7
Nn1g01671 Nelumbo nucifera HOM05D007428 ORTHO05D009308 3.1e-34 148.3 92 75.0
Gohir.D03G078400 Gossypium hirsutum HOM05D007428 ORTHO05D009308 4.1e-34 147.9 94 76.6
Gorai.003G085700 Gossypium raimondii HOM05D007428 ORTHO05D009308 4.1e-34 147.9 94 76.6
Sabra01G0074400 Salix brachista HOM05D007428 ORTHO05D009308 4.1e-34 147.9 94 75.5
Solyc08g008120.4 Solanum lycopersicum HOM05D007428 ORTHO05D009308 4.1e-34 147.9 93 73.1
Sopen08g003980 Solanum pennellii HOM05D007428 ORTHO05D009308 4.1e-34 147.9 93 73.1
THA.LOC104809367 Tarenaya hassleriana HOM05D007428 ORTHO05D009308 4.1e-34 147.9 96 74.0
Duzib205G1701 Durio zibethinus HOM05D007428 ORTHO05D009308 7.0e-34 147.1 93 77.4
MBI11_g02029_MAGBIO Magnolia biondii HOM05D007428 ORTHO05D009308 9.2e-34 146.7 92 73.9
Peaxi162Scf00102g01635 Petunia axillaris HOM05D007428 ORTHO05D009308 9.2e-34 146.7 93 73.1
BcaC02g08952 Brassica carinata HOM05D007428 ORTHO05D009308 1.2e-33 146.4 94 75.5
A04p14670 Brassica napus HOM05D007428 ORTHO05D009308 1.2e-33 146.4 94 75.5
C04p48540 Brassica napus HOM05D007428 ORTHO05D009308 1.2e-33 146.4 94 75.5
BolC4t26447H Brassica oleracea HOM05D007428 ORTHO05D009308 1.2e-33 146.4 94 75.5
BraA04t17107Z Brassica rapa HOM05D007428 ORTHO05D009308 1.2e-33 146.4 94 75.5
Gohir.D08G134500 Gossypium hirsutum HOM05D001458 ORTHO05D008462 1.2e-33 146.4 94 75.5
Cfa012244 Carpinus fangiana HOM05D007428 ORTHO05D009308 1.6e-33 146.0 94 76.6
DCAR_005573 Daucus carota HOM05D007428 ORTHO05D009308 2.0e-33 145.6 94 75.5
Phvul.001G130100 Phaseolus vulgaris HOM05D007428 ORTHO05D009308 2.7e-33 145.2 93 73.1
Sp7g00480 Schrenkiella parvula HOM05D007428 ORTHO05D009308 2.7e-33 145.2 96 74.0
Aa31LG9G500 Aethionema arabicum HOM05D007428 ORTHO05D009308 4.5e-33 144.4 96 74.0
MD06G1090900 Malus domestica HOM05D007428 ORTHO05D009308 4.5e-33 144.4 98 72.4
CARHR287610 Cardamine hirsuta HOM05D007428 ORTHO05D009308 5.9e-33 144.1 96 72.9
Carub.0007s3391 Capsella rubella HOM05D007428 ORTHO05D009308 1.7e-32 142.5 96 71.9
Gohir.A08G114300 Gossypium hirsutum HOM05D007428 ORTHO05D009308 1.7e-32 142.5 94 74.5
Aqoxy7G00179 Aquilegia oxysepala HOM05D007428 ORTHO05D009308 2.3e-32 142.1 94 70.2
Sed0012859 Sechium edule HOM05D007428 ORTHO05D009308 2.3e-32 142.1 96 71.9
Glyma.19G137300 Glycine max HOM05D007428 ORTHO05D009308 5.0e-32 141.0 93 71.0
AT5G41560 Arabidopsis thaliana HOM05D007428 ORTHO05D009308 6.6e-32 140.6 96 71.9
AL7G47840 Arabidopsis lyrata HOM05D007428 ORTHO05D009308 1.5e-31 139.4 96 70.8
CANSAT21G2180 Cannabis sativa HOM05D007428 ORTHO05D009308 1.5e-31 139.4 94 74.5
CiPaw.12G089300 Carya illinoinensis HOM05D007428 ORTHO05D009308 3.3e-31 138.3 95 71.6
Lalb_Chr25g0287261 Lupinus albus HOM05D007428 ORTHO05D009308 3.3e-31 138.3 93 71.0
Lj1g0002351 Lotus japonicus HOM05D007428 ORTHO05D009308 5.6e-31 137.5 93 68.8
QL12p031804 Quercus lobata HOM05D007428 ORTHO05D009308 5.6e-31 137.5 134 56.0
Rhsim02G0235600 Rhododendron simsii HOM05D007428 ORTHO05D009308 2.1e-30 135.6 146 50.0
Lsat_1_v5_gn_3_8800 Lactuca sativa HOM05D007428 ORTHO05D009308 3.6e-30 134.8 91 71.4
SEGI_01808 Sequoiadendron giganteum HOM05D007428 ORTHO05D009308 3.6e-30 134.8 92 66.3
ECA246G0502 Erigeron canadensis HOM05D007428 ORTHO05D009308 8.0e-30 133.7 95 70.5
CDE04G2716 Ceratophyllum demersum HOM05D007428 ORTHO05D009308 1.0e-29 133.3 93 69.9
PSO782G0783 Papaver somniferum HOM05D007428 ORTHO05D009308 1.0e-29 133.3 94 70.2
Glyma.03G134700 Glycine max HOM05D007428 ORTHO05D009308 1.4e-29 132.9 97 68.0
TPR.G18241 Trifolium pratense HOM05D007428 ORTHO05D009308 4.0e-29 131.3 93 66.7
Cc08_g15240 Coffea canephora HOM05D007428 ORTHO05D009308 1.5e-28 129.4 99 63.6
Medtr7g091260 Medicago truncatula HOM05D007428 ORTHO05D009308 2.6e-28 128.6 93 65.6
FAN08G3453 Fragaria x ananassa HOM05D005196 ORTHO05D006107 7.5e-28 127.1 71 81.7
HPP92_001758 Vanilla planifolia HOM05D007428 ORTHO05D009308 7.5e-28 127.1 95 66.3
SalBow8G4511 Salvia bowleyana HOM05D005196 ORTHO05D006107 1.3e-27 126.3 95 65.3
SGA_v2.0_scaffold111G31471 Striga asiatica HOM05D007428 ORTHO05D009308 2.2e-27 125.6 88 67.0
PSO478G2995 Papaver somniferum HOM05D007428 ORTHO05D009308 4.9e-27 124.4 94 67.0
Duzib068G1017 Durio zibethinus HOM05D007428 ORTHO05D009308 8.3e-27 123.6 70 82.9
arahy.Tifrunner.gnm1.ann1.I9CJRL Arachis hypogaea HOM05D007428 ORTHO05D009308 1.1e-26 123.2 90 65.6
Nn6g32110 Nelumbo nucifera HOM05D007428 ORTHO05D009308 2.4e-26 122.1 75 77.3
Gorai.004G137700 Gossypium raimondii HOM05D007428 ORTHO05D009308 3.5e-25 118.2 70 78.6
arahy.Tifrunner.gnm1.ann1.LGCW4P Arachis hypogaea HOM05D007428 ORTHO05D009308 1.3e-24 116.3 104 57.7
Zm00001eb001890 Zea mays HOM05D007428 ORTHO05D009308 1.7e-24 115.9 88 67.0
Hma1.2p1_0216F.1_g091060 Hydrangea macrophylla HOM05D007428 ORTHO05D009308 5.0e-24 114.4 94 61.7
SMO117G0109 Selaginella moellendorffii HOM05D007428 ORTHO05D009308 1.9e-23 112.5 78 66.7
Nitab4.5_0007906g0040 Nicotiana tabacum HOM05D007428 ORTHO05D009308 1.6e-22 109.4 94 61.7
Hund14271 Selenicereus undatus HOM05D007428 ORTHO05D009308 1.6e-22 109.4 66 78.8
Zm00001eb403670 Zea mays HOM05D007428 ORTHO05D009308 1.6e-22 109.4 85 68.2
Os03g0125700 Oryza sativa ssp. japonica HOM05D007428 ORTHO05D009308 8.9e-21 103.6 95 57.9
COL.COLO4_08363 Corchorus olitorius HOM05D007428 ORTHO05D009308 1.5e-20 102.8 64 75.0
MD14G1111700 Malus domestica HOM05D007428 ORTHO05D009308 4.4e-20 101.3 66 72.7
FvH4_5g03180 Fragaria vesca HOM05D007428 ORTHO05D009308 1.1e-18 96.7 66 72.7
Sc01g0009840 Simmondsia chinensis HOM05D007428 ORTHO05D009308 1.4e-18 96.3 70 62.9
Thecc.03G286400 Theobroma cacao HOM05D007428 ORTHO05D009308 2.4e-18 95.5 49 89.8
HPP92_003464 Vanilla planifolia HOM05D007428 ORTHO05D009308 9.2e-18 93.6 71 60.6
DCAR_008355 Daucus carota HOM05D001458 ORTHO05D008462 1.2e-17 93.2 73 65.8
Gohir.A02G105400 Gossypium hirsutum HOM05D007428 ORTHO05D009308 4.6e-17 91.3 54 79.6
Cfa012240 Carpinus fangiana HOM05D007428 ORTHO05D009308 6.0e-17 90.9 65 69.2
MBI17_g11952_MAGBIO Magnolia biondii HOM05D007428 ORTHO05D009308 4.3e-15 84.7 49 69.4
CAN.G792.73 Capsicum annuum HOM05D003118 ORTHO05D009308 1.2e-09 66.6 45 68.9
vmacro11409 Vaccinium macrocarpon HOM05D007428 ORTHO05D009308 1.6e-09 66.2 49 63.3
Ca_08439_v3 Cicer arietinum L. HOM05D007428 ORTHO05D009308 4.3e-07 58.2 61 50.8
HanXRQChr17g0533231 Helianthus annuus HOM05D007428 ORTHO05D009308 4.3e-07 58.2 65 52.3
Haze_08759 Corylus avellana HOM05D007428 ORTHO05D009308 7.3e-07 57.4 30 86.7


User provided reference genes

Program Settings