Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0469G001 Amborella trichopoda HOM05D005421 ORTHO05D007601 3.8e-34 147.5 70 100.0
ATR1164G001 Amborella trichopoda HOM05D005421 ORTHO05D007601 3.8e-34 147.5 70 100.0
Pp3c1_35390 Physcomitrium patens HOM05D005421 ORTHO05D007601 9.7e-30 132.9 70 85.7
Mapoly0138s0022 Marchantia polymorpha HOM05D005421 ORTHO05D007601 1.3e-29 132.5 70 88.6
CBR_g27792 Chara braunii HOM05D005421 ORTHO05D007601 1.4e-28 129.0 70 82.9
AagrBONN_evm.TU.Sc2ySwM_117.208 Anthoceros agrestis HOM05D005421 ORTHO05D007601 6.9e-28 126.7 70 82.9
SMO361G0640 Selaginella moellendorffii HOM05D005421 ORTHO05D007601 4.5e-27 124.0 70 80.0
SEGI_07889 Sequoiadendron giganteum HOM05D005421 ORTHO05D007601 5.9e-27 123.6 72 83.3
CDE02G0330 Ceratophyllum demersum HOM05D005421 ORTHO05D007601 5.0e-26 120.6 70 78.6
Nn4g25707 Nelumbo nucifera HOM05D005421 ORTHO05D007601 6.5e-26 120.2 70 80.0
Prupe.1G236900 Prunus persica HOM05D005421 ORTHO05D007601 6.5e-26 120.2 70 78.6
Phvul.007G199400 Phaseolus vulgaris HOM05D005421 ORTHO05D007601 2.5e-25 118.2 70 78.6
TWI12G1149 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 2.5e-25 118.2 70 78.6
Glyma.20G238500 Glycine max HOM05D005421 ORTHO05D007601 3.2e-25 117.9 70 78.6
MD12G1209800 Malus domestica HOM05D005421 ORTHO05D007601 3.2e-25 117.9 70 77.1
TWI56G0052 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 3.2e-25 117.9 70 77.1
GSVIVG01031188001 Vitis vinifera HOM05D005421 ORTHO05D007601 3.2e-25 117.9 70 77.1
MD04G1196900 Malus domestica HOM05D005421 ORTHO05D007601 4.2e-25 117.5 70 77.1
Sed0018701 Sechium edule HOM05D005421 ORTHO05D007601 4.2e-25 117.5 70 80.0
Solyc01g100060.4 Solanum lycopersicum HOM05D005421 ORTHO05D007601 4.2e-25 117.5 70 74.3
Sopen01g043590 Solanum pennellii HOM05D005421 ORTHO05D007601 4.2e-25 117.5 70 74.3
SGA_v2.0_scaffold4G01947 Striga asiatica HOM05D005421 ORTHO05D007601 4.2e-25 117.5 70 77.1
CANSAT54G2596 Cannabis sativa HOM05D005421 ORTHO05D007601 5.5e-25 117.1 70 75.7
Ca_10154_v3 Cicer arietinum L. HOM05D005421 ORTHO05D007601 5.5e-25 117.1 70 78.6
Ca_29832_v3 Cicer arietinum L. HOM05D005421 ORTHO05D007601 5.5e-25 117.1 70 78.6
Ciclev10001489m.g Citrus clementina HOM05D005421 ORTHO05D007601 5.5e-25 117.1 70 74.3
Glyma.10G149900 Glycine max HOM05D005421 ORTHO05D007601 5.5e-25 117.1 70 77.1
HanXRQChr01g0011821 Helianthus annuus HOM05D005421 ORTHO05D007601 5.5e-25 117.1 70 77.1
Manes.13G000084 Manihot esculenta HOM05D005421 ORTHO05D007601 5.5e-25 117.1 70 78.6
PSO170G1114 Papaver somniferum HOM05D005421 ORTHO05D007601 5.5e-25 117.1 70 77.1
PSO407G0035 Papaver somniferum HOM05D005421 ORTHO05D007601 5.5e-25 117.1 70 77.1
RcHm_v2.0_Chr3g0456541 Rosa chinensis HOM05D005421 ORTHO05D007601 5.5e-25 117.1 70 75.7
Aqoxy2G02863 Aquilegia oxysepala HOM05D005421 ORTHO05D007601 7.2e-25 116.7 70 77.1
Hund07118 Selenicereus undatus HOM05D005421 ORTHO05D007601 7.2e-25 116.7 70 75.7
Ah.04g161240 Amaranthus hybridus HOM05D005421 ORTHO05D007601 9.4e-25 116.3 70 74.3
ClCG02G015170 Citrullus lanatus HOM05D005421 ORTHO05D007601 9.4e-25 116.3 70 77.1
CsaV3_2G006840 Cucumis sativus L. HOM05D005421 ORTHO05D007601 9.4e-25 116.3 70 77.1
ECA236G4663 Erigeron canadensis HOM05D005421 ORTHO05D007601 9.4e-25 116.3 70 74.3
Psat6g151720 Pisum sativum HOM05D005421 ORTHO05D007601 9.4e-25 116.3 70 77.1
Sc16g0008670 Simmondsia chinensis HOM05D005421 ORTHO05D007601 9.4e-25 116.3 70 74.3
THA.LOC104805907 Tarenaya hassleriana HOM05D005421 ORTHO05D007601 9.4e-25 116.3 70 77.1
AUR62000721 Chenopodium quinoa HOM05D005421 ORTHO05D007601 1.2e-24 115.9 70 74.3
AUR62005243 Chenopodium quinoa HOM05D005421 ORTHO05D007601 1.2e-24 115.9 70 74.3
Dinv24409 Davidia involucrata HOM05D005421 ORTHO05D007601 1.2e-24 115.9 70 75.7
FvH4_6g07010 Fragaria vesca HOM05D005421 ORTHO05D007601 1.2e-24 115.9 70 74.3
FAN05G0688 Fragaria x ananassa HOM05D005421 ORTHO05D007601 1.2e-24 115.9 70 74.3
FAN09G4258 Fragaria x ananassa HOM05D000389 ORTHO05D000287 1.2e-24 115.9 70 74.3
FAN14G1909 Fragaria x ananassa HOM05D005421 ORTHO05D007601 1.2e-24 115.9 70 74.3
Gohir.A10G155100 Gossypium hirsutum HOM05D005421 ORTHO05D007601 1.2e-24 115.9 70 72.9
Gohir.D10G110800 Gossypium hirsutum HOM05D005421 ORTHO05D007601 1.2e-24 115.9 70 72.9
Gorai.011G122100 Gossypium raimondii HOM05D005421 ORTHO05D007601 1.2e-24 115.9 70 72.9
Lj5g0011296 Lotus japonicus HOM05D005421 ORTHO05D007601 1.2e-24 115.9 70 75.7
TAR636G1951 Trochodendron aralioides HOM05D005421 ORTHO05D007601 1.2e-24 115.9 70 75.7
MELO3C004206.2 Cucumis melo HOM05D005421 ORTHO05D007601 1.6e-24 115.5 70 77.1
Lalb_Chr21g0310441 Lupinus albus HOM05D005421 ORTHO05D007601 1.6e-24 115.5 70 74.3
EL10Ac4g09870 Beta vulgaris HOM05D005421 ORTHO05D007601 2.1e-24 115.2 70 74.3
Medtr1g083720 Medicago truncatula HOM05D005421 ORTHO05D007601 2.1e-24 115.2 70 75.7
Peaxi162Scf00037g01816 Petunia axillaris HOM05D005421 ORTHO05D007601 2.1e-24 115.2 70 72.9
Prupe.6G317400 Prunus persica HOM05D005421 ORTHO05D007601 2.1e-24 115.2 70 75.7
PGSC0003DMG400024728 Solanum tuberosum HOM05D005421 ORTHO05D007601 2.1e-24 115.2 70 72.9
Thecc.06G040900 Theobroma cacao HOM05D005421 ORTHO05D007601 2.1e-24 115.2 70 75.7
CAN.G1273.26 Capsicum annuum HOM05D005421 ORTHO05D007601 2.7e-24 114.8 70 71.4
Zm00001eb095730 Zea mays HOM05D005421 ORTHO05D007601 2.7e-24 114.8 70 72.9
DCAR_004503 Daucus carota HOM05D005421 ORTHO05D007601 3.6e-24 114.4 70 74.3
Lsat_1_v5_gn_7_73220 Lactuca sativa HOM05D005421 ORTHO05D007601 3.6e-24 114.4 70 75.7
MBI18_g04564_MAGBIO Magnolia biondii HOM05D005421 ORTHO05D007601 3.6e-24 114.4 70 72.9
SalBow1G5723 Salvia bowleyana HOM05D005421 ORTHO05D007601 3.6e-24 114.4 70 74.3
VMungo0720G1843 Vigna mungo HOM05D005421 ORTHO05D007601 3.6e-24 114.4 70 77.1
Actinidia35540 Actinidia chinensis HOM05D005421 ORTHO05D007601 4.7e-24 114.0 70 74.3
Cpa.g.sc48.125 Carica papaya HOM05D005421 ORTHO05D007601 4.7e-24 114.0 70 74.3
Dinv30846 Davidia involucrata HOM05D005421 ORTHO05D007601 4.7e-24 114.0 70 75.7
Lj9A202T65 Lonicera japonica HOM05D005421 ORTHO05D007601 4.7e-24 114.0 70 74.3
Lalb_Chr02g0148011 Lupinus albus HOM05D005421 ORTHO05D007601 6.1e-24 113.6 70 74.3
Rhsim11G0092200 Rhododendron simsii HOM05D005421 ORTHO05D007601 6.1e-24 113.6 70 74.3
THA.LOC104820733 Tarenaya hassleriana HOM05D005421 ORTHO05D007601 6.1e-24 113.6 70 75.7
HPP92_020212 Vanilla planifolia HOM05D005421 ORTHO05D007601 7.9e-24 113.2 70 72.9
HPP92_020232 Vanilla planifolia HOM05D005421 ORTHO05D007601 7.9e-24 113.2 70 72.9
Cfa006671 Carpinus fangiana HOM05D005421 ORTHO05D007601 1.0e-23 112.8 70 74.3
CiPaw.07G025400 Carya illinoinensis HOM05D005421 ORTHO05D007601 1.0e-23 112.8 70 74.3
COL.COLO4_07356 Corchorus olitorius HOM05D005421 ORTHO05D007601 1.0e-23 112.8 70 71.4
Migut.B01005 Erythranthe guttata HOM05D005421 ORTHO05D007601 1.0e-23 112.8 70 72.9
Nitab4.5_0001971g0070 Nicotiana tabacum HOM05D005421 ORTHO05D007601 1.0e-23 112.8 70 71.4
Nitab4.5_0002612g0040 Nicotiana tabacum HOM05D005421 ORTHO05D007601 1.0e-23 112.8 70 71.4
Potri.013G012000 Populus trichocarpa HOM05D005421 ORTHO05D007601 1.0e-23 112.8 70 71.4
PGR031G1007 Punica granatum HOM05D005421 ORTHO05D007601 1.0e-23 112.8 70 72.9
CSS0007056 Camellia sinensis var. sinensis HOM05D005421 ORTHO05D007601 1.4e-23 112.5 70 71.4
CSS0046729 Camellia sinensis var. sinensis HOM05D005421 ORTHO05D007601 1.4e-23 112.5 70 71.4
Cc02_g34540 Coffea canephora HOM05D005421 ORTHO05D007601 1.4e-23 112.5 70 72.9
Os09g0103600 Oryza sativa ssp. japonica HOM05D005421 ORTHO05D007601 1.4e-23 112.5 70 71.4
QL03p018920 Quercus lobata HOM05D005421 ORTHO05D007601 1.4e-23 112.5 70 74.3
Atru.chr2.115 Acer truncatum HOM05D005421 ORTHO05D007601 1.8e-23 112.1 70 72.9
Haze_04100 Corylus avellana HOM05D005421 ORTHO05D007601 1.8e-23 112.1 70 74.3
Sabra13G0010600 Salix brachista HOM05D005421 ORTHO05D007601 2.3e-23 111.7 70 71.4
Aa31LG3G1470 Aethionema arabicum HOM05D005421 ORTHO05D007601 3.0e-23 111.3 70 72.9
AL4G38520 Arabidopsis lyrata HOM05D005421 ORTHO05D007601 3.0e-23 111.3 70 72.9
BcaC02g07328 Brassica carinata HOM05D005421 ORTHO05D007601 3.0e-23 111.3 70 71.4
A04p31080 Brassica napus HOM05D005421 ORTHO05D007601 3.0e-23 111.3 70 71.4
C04p68470 Brassica napus HOM05D005421 ORTHO05D007601 3.0e-23 111.3 70 71.4
BolC4t28347H Brassica oleracea HOM05D005421 ORTHO05D007601 3.0e-23 111.3 70 71.4
BraA04t18563Z Brassica rapa HOM05D005421 ORTHO05D007601 3.0e-23 111.3 70 71.4
AT2G40650 Arabidopsis thaliana HOM05D005421 ORTHO05D007601 5.1e-23 110.5 70 71.4
BcaB01g03524 Brassica carinata HOM05D005421 ORTHO05D007601 5.1e-23 110.5 70 71.4
BcaC01g05387 Brassica carinata HOM05D005421 ORTHO05D007601 5.1e-23 110.5 70 71.4
A03p22860 Brassica napus HOM05D005421 ORTHO05D007601 5.1e-23 110.5 70 71.4
C03p27110 Brassica napus HOM05D005421 ORTHO05D007601 5.1e-23 110.5 70 71.4
BolC3t15092H Brassica oleracea HOM05D005421 ORTHO05D007601 5.1e-23 110.5 70 71.4
BraA03t11510Z Brassica rapa HOM05D005421 ORTHO05D007601 5.1e-23 110.5 70 71.4
Oeu045895.1 Olea europaea HOM05D005421 ORTHO05D007601 5.1e-23 110.5 68 75.0
Sp4g22980 Schrenkiella parvula HOM05D005421 ORTHO05D007601 5.1e-23 110.5 70 71.4
CARHR135760 Cardamine hirsuta HOM05D005421 ORTHO05D007601 6.7e-23 110.2 70 71.4
Eucgr.H03270 Eucalyptus grandis HOM05D005421 ORTHO05D007601 8.8e-23 109.8 70 70.0
Carub.0004s2294 Capsella rubella HOM05D005421 ORTHO05D007601 1.1e-22 109.4 70 71.4
TWI38G1969 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 1.1e-22 109.4 70 70.0
Duzib150G0691 Durio zibethinus HOM05D005421 ORTHO05D007601 2.6e-22 108.2 70 70.0
BcaB06g29166 Brassica carinata HOM05D005421 ORTHO05D007601 3.3e-22 107.8 68 70.6
FAN02G3486 Fragaria x ananassa HOM05D005421 ORTHO05D007601 3.3e-22 107.8 84 63.1
Nitab4.5_0003248g0020 Nicotiana tabacum HOM05D005421 ORTHO05D007601 3.3e-22 107.8 70 68.6
Cre12.g503400 Chlamydomonas reinhardtii HOM05D005421 ORTHO05D007601 4.8e-21 104.0 69 65.2
COL.COLO4_26689 Corchorus olitorius HOM05D005421 ORTHO05D007601 1.4e-20 102.4 68 72.1
arahy.Tifrunner.gnm1.ann1.1MC3I0 Arachis hypogaea HOM05D005421 ORTHO05D007601 6.9e-20 100.1 103 52.4
arahy.Tifrunner.gnm1.ann1.MB2RBZ Arachis hypogaea HOM05D005421 ORTHO05D007601 6.9e-20 100.1 103 52.4
vmacro01533 Vaccinium macrocarpon HOM05D005421 ORTHO05D007601 2.0e-19 98.6 109 49.5
MCO01G394 Micromonas commoda HOM05D005421 ORTHO05D007601 1.7e-18 95.5 70 57.1
PRCOL_00004539 Prasinoderma coloniale HOM05D005421 ORTHO05D007601 2.9e-18 94.7 70 60.0
Peaxi162Scf00404g00814 Petunia axillaris HOM05D005421 ORTHO05D007601 1.0e-15 86.3 67 65.7
Potri.005G021600 Populus trichocarpa HOM05D005421 ORTHO05D007601 9.7e-14 79.7 70 55.7
Haze_27467 Corylus avellana HOM05D005421 ORTHO05D007601 1.8e-12 75.5 68 51.5
BcaB06g27834 Brassica carinata HOM05D005421 ORTHO05D031867 1.1e-09 66.2 69 55.1
Dinv05263 Davidia involucrata HOM05D002902 ORTHO05D008934 1.4e-07 59.3 41 68.3


User provided reference genes

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