Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1153G034 Amborella trichopoda HOM05D000621 ORTHO05D000421 6.1e-38 160.2 75 100.0
ATR1093G018 Amborella trichopoda HOM05D000621 ORTHO05D000421 8.2e-27 123.2 74 71.6
ATR0723G029 Amborella trichopoda HOM05D017912 ORTHO05D000421 1.7e-24 115.5 66 75.8
ATR0723G052 Amborella trichopoda HOM05D000621 ORTHO05D000421 3.3e-20 101.3 60 71.7
ATR0686G219 Amborella trichopoda HOM05D000621 ORTHO05D000421 9.7e-20 99.8 76 59.2
ATR0691G208 Amborella trichopoda HOM05D000621 ORTHO05D000421 2.4e-18 95.1 78 57.7
HanXRQChr05g0148601 Helianthus annuus HOM05D000621 ORTHO05D000421 2.2e-11 72.0 76 39.5
Peaxi162Scf00770g00127 Petunia axillaris HOM05D000621 ORTHO05D000421 9.1e-10 66.6 73 47.9
Os05g0132400 Oryza sativa ssp. japonica HOM05D000621 ORTHO05D000421 2.0e-09 65.5 72 41.7
TAR362G0161 Trochodendron aralioides HOM05D000621 ORTHO05D000421 2.7e-09 65.1 74 43.2
PSO210G6820 Papaver somniferum HOM05D000621 ORTHO05D000421 5.9e-09 63.9 76 38.2
Nn1g04409 Nelumbo nucifera HOM05D000621 ORTHO05D000421 7.7e-09 63.5 75 38.7
TAR633G2377 Trochodendron aralioides HOM05D000621 ORTHO05D000421 1.0e-08 63.2 76 39.5
AT1G09320 Arabidopsis thaliana HOM05D000621 ORTHO05D000421 1.3e-08 62.8 75 37.3
QL08p041642 Quercus lobata HOM05D000621 ORTHO05D000421 1.3e-08 62.8 75 38.7
QL08p041687 Quercus lobata HOM05D000621 ORTHO05D000421 1.3e-08 62.8 75 38.7
Zm00001eb354850 Zea mays HOM05D000621 ORTHO05D000421 1.3e-08 62.8 66 40.9
Aqoxy1G01445 Aquilegia oxysepala HOM05D000621 ORTHO05D000421 1.7e-08 62.4 77 39.0
Dinv08798 Davidia involucrata HOM05D000621 ORTHO05D000421 1.7e-08 62.4 75 36.0
ECA246G1254 Erigeron canadensis HOM05D000621 ORTHO05D000421 2.2e-08 62.0 62 41.9
Lalb_Chr21g0310171 Lupinus albus HOM05D000621 ORTHO05D000421 2.2e-08 62.0 76 38.2
Prupe.2G323100 Prunus persica HOM05D000621 ORTHO05D000421 2.2e-08 62.0 77 41.6
Lsat_1_v5_gn_6_116160 Lactuca sativa HOM05D000621 ORTHO05D000421 2.9e-08 61.6 66 39.4
Sc16g0009170 Simmondsia chinensis HOM05D000621 ORTHO05D000421 2.9e-08 61.6 75 40.0
Ca_18882_v3 Cicer arietinum L. HOM05D000621 ORTHO05D000421 3.8e-08 61.2 56 46.4
Lalb_Chr02g0147681 Lupinus albus HOM05D000621 ORTHO05D000421 3.8e-08 61.2 77 39.0
Nn4g25511 Nelumbo nucifera HOM05D000621 ORTHO05D000421 3.8e-08 61.2 74 41.9
Aqoxy6G00423 Aquilegia oxysepala HOM05D000621 ORTHO05D000421 5.0e-08 60.8 76 35.5
CANSAT54G1464 Cannabis sativa HOM05D000621 ORTHO05D000421 5.0e-08 60.8 76 39.5
TPR.G2597 Trifolium pratense HOM05D000621 ORTHO05D000421 5.0e-08 60.8 75 42.7
VMungo0720G2260 Vigna mungo HOM05D000621 ORTHO05D000421 5.0e-08 60.8 75 38.7
DCAR_005739 Daucus carota HOM05D000087 ORTHO05D013030 6.5e-08 60.5 71 39.4
Peaxi162Scf00330g00124 Petunia axillaris HOM05D000621 ORTHO05D000421 6.5e-08 60.5 72 40.3
Lalb_Chr15g0089071 Lupinus albus HOM05D000621 ORTHO05D000421 8.5e-08 60.1 78 35.9
SHI18046 Sapria himalayana HOM05D000621 ORTHO05D000421 1.1e-07 59.7 76 40.8
Hund07303 Selenicereus undatus HOM05D000621 ORTHO05D000421 1.1e-07 59.7 77 37.7
AL1G19810 Arabidopsis lyrata HOM05D000621 ORTHO05D000421 1.5e-07 59.3 75 36.0
Peaxi162Scf00469g00022 Petunia axillaris HOM05D000621 ORTHO05D000421 1.5e-07 59.3 61 42.6
EL10As5g23609 Beta vulgaris HOM05D000621 ORTHO05D000421 1.9e-07 58.9 62 45.2
Glyma.20G095500 Glycine max HOM05D000621 ORTHO05D000421 1.9e-07 58.9 76 40.8
Lj3A834G67 Lonicera japonica HOM05D000621 ORTHO05D000421 1.9e-07 58.9 76 38.2
Lalb_Chr06g0167411 Lupinus albus HOM05D000621 ORTHO05D000421 1.9e-07 58.9 77 37.7
Nitab4.5_0010988g0010 Nicotiana tabacum HOM05D000621 ORTHO05D000421 1.9e-07 58.9 74 41.9
Sp1g07930 Schrenkiella parvula HOM05D000621 ORTHO05D000421 1.9e-07 58.9 68 41.2
Hund03139 Selenicereus undatus HOM05D000621 ORTHO05D000421 1.9e-07 58.9 75 38.7
AT3G06520 Arabidopsis thaliana HOM05D000621 ORTHO05D000421 2.5e-07 58.5 77 31.2
Gohir.D03G153616 Gossypium hirsutum HOM05D000621 ORTHO05D000421 2.5e-07 58.5 77 33.8
Gohir.D03G153632 Gossypium hirsutum HOM05D000621 ORTHO05D000421 2.5e-07 58.5 77 33.8
Gorai.003G161300 Gossypium raimondii HOM05D000621 ORTHO05D000421 2.5e-07 58.5 77 33.8
Gorai.003G161400 Gossypium raimondii HOM05D000621 ORTHO05D000421 2.5e-07 58.5 77 33.8
Rhsim02G0002100 Rhododendron simsii HOM05D000621 ORTHO05D000421 2.5e-07 58.5 76 35.5
THA.LOC104816857 Tarenaya hassleriana HOM05D000621 ORTHO05D000421 2.5e-07 58.5 75 38.7
EL10Ac4g09498 Beta vulgaris HOM05D000621 ORTHO05D000421 3.2e-07 58.2 77 37.7
Carub.0001s0866 Capsella rubella HOM05D000621 ORTHO05D000421 3.2e-07 58.2 68 39.7
Haze_22238 Corylus avellana HOM05D000621 ORTHO05D000421 3.2e-07 58.2 66 43.9
Haze_22242 Corylus avellana HOM05D000621 ORTHO05D000421 3.2e-07 58.2 66 43.9
Nitab4.5_0003135g0030 Nicotiana tabacum HOM05D000621 ORTHO05D000421 3.2e-07 58.2 76 35.5
QL02p093988 Quercus lobata HOM05D000621 ORTHO05D000421 3.2e-07 58.2 61 39.3
GSVIVG01031264001 Vitis vinifera HOM05D000621 ORTHO05D000421 3.2e-07 58.2 77 39.0
Ah.07g201640 Amaranthus hybridus HOM05D000621 ORTHO05D000421 4.2e-07 57.8 74 39.2
Aqoxy2G02652 Aquilegia oxysepala HOM05D000621 ORTHO05D000421 4.2e-07 57.8 77 39.0
QL09p026609 Quercus lobata HOM05D000621 ORTHO05D000421 4.2e-07 57.8 76 39.5
Aqoxy2G02637 Aquilegia oxysepala HOM05D000621 ORTHO05D000421 5.5e-07 57.4 76 32.9
EL10Ac3g05555 Beta vulgaris HOM05D000621 ORTHO05D000421 5.5e-07 57.4 75 37.3
BcaC07g41898 Brassica carinata HOM05D000621 ORTHO05D000421 5.5e-07 57.4 68 39.7
C08p49530 Brassica napus HOM05D000621 ORTHO05D000421 5.5e-07 57.4 68 39.7
BolC8t52490H Brassica oleracea HOM05D000621 ORTHO05D000421 5.5e-07 57.4 68 39.7
Manes.09G178400 Manihot esculenta HOM05D000621 ORTHO05D000421 5.5e-07 57.4 76 39.5
QL06p013123 Quercus lobata HOM05D000621 ORTHO05D000421 5.5e-07 57.4 75 42.7
THA.LOC104823716 Tarenaya hassleriana HOM05D000621 ORTHO05D000421 5.5e-07 57.4 75 37.3
Ah.04g158500 Amaranthus hybridus HOM05D000621 ORTHO05D000421 7.2e-07 57.0 76 38.2
Thhalv10009728m.g Eutrema salsugineum HOM05D000621 ORTHO05D000421 7.2e-07 57.0 75 34.7
Medtr1g084210 Medicago truncatula HOM05D000621 ORTHO05D000421 7.2e-07 57.0 72 37.5
Potri.005G011100 Populus trichocarpa HOM05D000621 ORTHO05D000421 7.2e-07 57.0 66 45.5
Rhsim11G0097900 Rhododendron simsii HOM05D000621 ORTHO05D000421 7.2e-07 57.0 72 37.5
PGSC0003DMG400015969 Solanum tuberosum HOM05D000621 ORTHO05D000421 7.2e-07 57.0 76 35.5
TWI12G0894 Tripterygium wilfordii HOM05D000621 ORTHO05D000421 7.2e-07 57.0 75 37.3
TWI56G1461 Tripterygium wilfordii HOM05D000621 ORTHO05D000421 7.2e-07 57.0 76 36.8
HanXRQChr05g0135641 Helianthus annuus HOM05D000621 ORTHO05D000421 9.4e-07 56.6 68 39.7
MD07G1304600 Malus domestica HOM05D000621 ORTHO05D000421 9.4e-07 56.6 74 41.9
QL03p016316 Quercus lobata HOM05D000621 ORTHO05D000421 9.4e-07 56.6 76 38.2
QL03p016528 Quercus lobata HOM05D000621 ORTHO05D000421 9.4e-07 56.6 76 38.2
PGSC0003DMG400002758 Solanum tuberosum HOM05D000621 ORTHO05D000421 9.4e-07 56.6 67 37.3
Ah.11g049090 Amaranthus hybridus HOM05D000621 ORTHO05D000421 1.2e-06 56.2 67 41.8
CSS0036864 Camellia sinensis var. sinensis HOM05D000621 ORTHO05D000421 1.2e-06 56.2 75 36.0
Carub.0003s0598 Capsella rubella HOM05D000621 ORTHO05D000421 1.2e-06 56.2 77 29.9
CARHR009280 Cardamine hirsuta HOM05D000621 ORTHO05D000421 1.2e-06 56.2 68 39.7
Ciclev10001744m.g Citrus clementina HOM05D000621 ORTHO05D000421 1.2e-06 56.2 75 38.7
Dinv14988 Davidia involucrata HOM05D000621 ORTHO05D000421 1.2e-06 56.2 61 42.6
RcHm_v2.0_Chr4g0426121 Rosa chinensis HOM05D000621 ORTHO05D000421 1.2e-06 56.2 76 38.2
Cfa007381 Carpinus fangiana HOM05D000621 ORTHO05D000421 1.6e-06 55.8 61 41.0
Gohir.A03G017864 Gossypium hirsutum HOM05D000621 ORTHO05D000421 1.6e-06 55.8 77 33.8
Gohir.A03G017880 Gossypium hirsutum HOM05D000621 ORTHO05D000421 1.6e-06 55.8 79 34.2
Manes.03G208100 Manihot esculenta HOM05D000621 ORTHO05D000421 1.6e-06 55.8 76 34.2
QL03p016640 Quercus lobata HOM05D000621 ORTHO05D000421 1.6e-06 55.8 76 38.2
Sabra05G0008200 Salix brachista HOM05D000621 ORTHO05D000421 1.6e-06 55.8 64 45.3
Sabra05G0019500 Salix brachista HOM05D000621 ORTHO05D000421 1.6e-06 55.8 64 45.3
unitig_26.g9551 Utricularia gibba HOM05D000621 ORTHO05D000421 1.6e-06 55.8 59 44.1
Aa31LG1G7340 Aethionema arabicum HOM05D000621 ORTHO05D000421 2.1e-06 55.5 64 43.8
Aqoxy6G00419 Aquilegia oxysepala HOM05D000621 ORTHO05D000421 2.1e-06 55.5 73 35.6
CiPaw.07G031400 Carya illinoinensis HOM05D000621 ORTHO05D000421 2.1e-06 55.5 76 38.2
Haze_14728 Corylus avellana HOM05D000621 ORTHO05D000421 2.1e-06 55.5 61 39.3
DCAR_002112 Daucus carota HOM05D000621 ORTHO05D000421 2.1e-06 55.5 76 35.5
Sopen01g023650 Solanum pennellii HOM05D000621 ORTHO05D000421 2.1e-06 55.5 76 35.5
Atru.chr12.1186 Acer truncatum HOM05D000621 ORTHO05D000421 2.7e-06 55.1 71 35.2
Aqoxy2G02651 Aquilegia oxysepala HOM05D000621 ORTHO05D000421 2.7e-06 55.1 76 34.2
MSTRG.27927 Avicennia marina HOM05D000621 ORTHO05D000421 2.7e-06 55.1 64 40.6
A06p06040 Brassica napus HOM05D000621 ORTHO05D000421 2.7e-06 55.1 68 38.2
A09p65540 Brassica napus HOM05D000621 ORTHO05D000421 2.7e-06 55.1 68 38.2
BraA06t23815Z Brassica rapa HOM05D000621 ORTHO05D000421 2.7e-06 55.1 68 38.2
BraA09t41899Z Brassica rapa HOM05D000621 ORTHO05D000421 2.7e-06 55.1 68 38.2
Gohir.D03G153648 Gossypium hirsutum HOM05D000621 ORTHO05D000421 2.7e-06 55.1 77 33.8
Gorai.003G161500 Gossypium raimondii HOM05D000621 ORTHO05D000421 2.7e-06 55.1 77 33.8
MBI19_g03282_MAGBIO Magnolia biondii HOM05D000621 ORTHO05D000421 2.7e-06 55.1 75 38.7
Oeu020921.1 Olea europaea HOM05D000621 ORTHO05D000421 2.7e-06 55.1 69 42.0
Solyc03g120030.1 Solanum lycopersicum HOM05D000621 ORTHO05D000421 2.7e-06 55.1 66 40.9
Sopen01g031010 Solanum pennellii HOM05D000621 ORTHO05D000421 2.7e-06 55.1 66 42.4
Actinidia20975 Actinidia chinensis HOM05D000621 ORTHO05D000421 3.6e-06 54.7 72 36.1
Actinidia35509 Actinidia chinensis HOM05D000621 ORTHO05D000421 3.6e-06 54.7 74 35.1
BcaC05g24786 Brassica carinata HOM05D000621 ORTHO05D000421 3.6e-06 54.7 68 38.2
C05p07310 Brassica napus HOM05D000621 ORTHO05D000421 3.6e-06 54.7 68 38.2
BolC5t29489H Brassica oleracea HOM05D000621 ORTHO05D000421 3.6e-06 54.7 68 38.2
CSS0007912 Camellia sinensis var. sinensis HOM05D000621 ORTHO05D000421 3.6e-06 54.7 60 43.3
DCAR_005741 Daucus carota HOM05D000621 ORTHO05D000421 3.6e-06 54.7 73 38.4
Gorai.004G145200 Gossypium raimondii HOM05D000621 ORTHO05D000421 3.6e-06 54.7 76 38.2
Hma1.2p1_0408F.1_g146480 Hydrangea macrophylla HOM05D000621 ORTHO05D000421 3.6e-06 54.7 63 44.4
Lj5g0023639 Lotus japonicus HOM05D000621 ORTHO05D000421 3.6e-06 54.7 75 41.3
Phvul.011G130600 Phaseolus vulgaris HOM05D000621 ORTHO05D000421 3.6e-06 54.7 70 37.1
Phvul.011G130700 Phaseolus vulgaris HOM05D000621 ORTHO05D000421 3.6e-06 54.7 70 37.1
QL03p016784 Quercus lobata HOM05D000621 ORTHO05D000421 3.6e-06 54.7 76 38.2
PGSC0003DMG400009053 Solanum tuberosum HOM05D000621 ORTHO05D000421 3.6e-06 54.7 64 43.8
Aqoxy5G00224 Aquilegia oxysepala HOM05D000621 ORTHO05D000421 4.7e-06 54.3 76 32.9
BcaB07g34130 Brassica carinata HOM05D000621 ORTHO05D000421 4.7e-06 54.3 68 36.8
CSS0001187 Camellia sinensis var. sinensis HOM05D000621 ORTHO05D000421 4.7e-06 54.3 66 37.9
Thhalv10020194m.g Eutrema salsugineum HOM05D000621 ORTHO05D000421 4.7e-06 54.3 76 34.2
Hma1.2p1_0052F.1_g030670 Hydrangea macrophylla HOM05D000621 ORTHO05D000421 4.7e-06 54.3 74 40.5
Psat0s4293g0040 Pisum sativum HOM05D000621 ORTHO05D000421 4.7e-06 54.3 73 38.4
PGSC0003DMG400041590 Solanum tuberosum HOM05D000621 ORTHO05D000421 4.7e-06 54.3 69 37.7
BolC4t21700H Brassica oleracea HOM05D000621 ORTHO05D000421 6.1e-06 53.9 77 35.1
CAN.G1033.3 Capsicum annuum HOM05D000621 ORTHO05D000421 6.1e-06 53.9 76 34.2
ECA236G2303 Erigeron canadensis HOM05D000621 ORTHO05D000421 6.1e-06 53.9 71 38.0
Gohir.D03G153664 Gossypium hirsutum HOM05D000621 ORTHO05D000421 6.1e-06 53.9 77 32.5
Gohir.D08G141200 Gossypium hirsutum HOM05D000621 ORTHO05D000421 6.1e-06 53.9 76 36.8
Manes.09G186900 Manihot esculenta HOM05D000621 ORTHO05D000421 6.1e-06 53.9 72 36.1
Medtr4g079830 Medicago truncatula HOM05D000621 ORTHO05D000421 6.1e-06 53.9 57 40.4
Phvul.007G202900 Phaseolus vulgaris HOM05D000621 ORTHO05D000421 6.1e-06 53.9 75 34.7
HPP92_027925 Vanilla planifolia HOM05D000621 ORTHO05D000421 6.1e-06 53.9 74 39.2
Actinidia35214 Actinidia chinensis HOM05D000621 ORTHO05D000421 8.0e-06 53.5 77 32.5
C04p00670 Brassica napus HOM05D000621 ORTHO05D000421 8.0e-06 53.5 77 35.1
CDE11G0246 Ceratophyllum demersum HOM05D000621 ORTHO05D000421 8.0e-06 53.5 73 41.1
COL.COLO4_23189 Corchorus olitorius HOM05D000621 ORTHO05D000421 8.0e-06 53.5 77 35.1
Haze_04043 Corylus avellana HOM05D000621 ORTHO05D000421 8.0e-06 53.5 66 39.4
Peaxi162Scf00228g00737 Petunia axillaris HOM05D000621 ORTHO05D000421 8.0e-06 53.5 76 34.2
Prupe.6G310200 Prunus persica HOM05D000621 ORTHO05D000421 8.0e-06 53.5 75 34.7
Sopen06g028520 Solanum pennellii HOM05D000621 ORTHO05D000421 8.0e-06 53.5 67 38.8


User provided reference genes

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