Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1149G048 Amborella trichopoda HOM05D002484 ORTHO05D002541 1.3e-41 172.6 81 100.0
Peaxi162Scf00324g00716 Petunia axillaris HOM05D002484 ORTHO05D002541 1.2e-18 96.3 78 53.8
Solyc07g009260.3 Solanum lycopersicum HOM05D002484 ORTHO05D002541 1.5e-18 95.9 69 59.4
Peaxi162Scf00324g00722 Petunia axillaris HOM05D002484 ORTHO05D002541 1.7e-17 92.4 71 54.9
Ciclev10030125m.g Citrus clementina HOM05D002484 ORTHO05D002541 2.2e-17 92.0 72 56.9
COL.COLO4_25964 Corchorus olitorius HOM05D002484 ORTHO05D002541 3.7e-17 91.3 71 53.5
Peaxi162Scf00324g00715 Petunia axillaris HOM05D002484 ORTHO05D002541 3.7e-17 91.3 77 53.2
CAN.G1126.34 Capsicum annuum HOM05D002484 ORTHO05D002541 6.4e-17 90.5 69 56.5
PGR031G2841 Punica granatum HOM05D002484 ORTHO05D002541 8.3e-17 90.1 70 58.6
Lj3g0015575 Lotus japonicus HOM05D002484 ORTHO05D002541 1.1e-16 89.7 81 48.1
Medtr8g012795 Medicago truncatula HOM05D002484 ORTHO05D002541 7.0e-16 87.0 80 55.0
Lsat_1_v5_gn_5_65860 Lactuca sativa HOM05D002484 ORTHO05D002541 2.7e-15 85.1 68 55.9
BcaB03g14925 Brassica carinata HOM05D002484 ORTHO05D002541 3.5e-15 84.7 72 52.8
Psat4g203560 Pisum sativum HOM05D002484 ORTHO05D002541 6.0e-15 84.0 73 54.8
HanXRQChr16g0505511 Helianthus annuus HOM05D002484 ORTHO05D002541 1.0e-14 83.2 68 54.4
HanXRQChr16g0505521 Helianthus annuus HOM05D002484 ORTHO05D002541 1.0e-14 83.2 68 54.4
Medtr8g012775 Medicago truncatula HOM05D002484 ORTHO05D002541 1.0e-14 83.2 79 53.2
Atru.chr5.3052 Acer truncatum HOM05D002484 ORTHO05D002541 1.3e-14 82.8 78 51.3
Carub.0007s0108 Capsella rubella HOM05D002484 ORTHO05D002541 1.7e-14 82.4 78 48.7
HanXRQChr16g0505831 Helianthus annuus HOM05D002484 ORTHO05D002541 1.7e-14 82.4 80 45.0
DCAR_028974 Daucus carota HOM05D002484 ORTHO05D002541 2.3e-14 82.0 72 52.8
ECA236G3870 Erigeron canadensis HOM05D002484 ORTHO05D002541 2.3e-14 82.0 72 50.0
Medtr8g012835 Medicago truncatula HOM05D002484 ORTHO05D002541 2.3e-14 82.0 74 54.1
BcaC08g46653 Brassica carinata HOM05D002484 ORTHO05D002541 3.0e-14 81.6 62 54.8
COL.COLO4_25966 Corchorus olitorius HOM05D002484 ORTHO05D002541 3.0e-14 81.6 66 51.5
Thecc.02G082200 Theobroma cacao HOM05D002484 ORTHO05D002541 3.0e-14 81.6 81 46.9
Actinidia27667 Actinidia chinensis HOM05D002484 ORTHO05D002541 3.9e-14 81.3 81 50.6
Ciclev10029712m.g Citrus clementina HOM05D002484 ORTHO05D002541 3.9e-14 81.3 72 48.6
Ciclev10029828m.g Citrus clementina HOM05D002484 ORTHO05D002541 3.9e-14 81.3 72 48.6
C06p46130 Brassica napus HOM05D002484 ORTHO05D002541 5.0e-14 80.9 62 54.8
BolC6t39666H Brassica oleracea HOM05D002484 ORTHO05D002541 5.0e-14 80.9 62 54.8
BraA07t31386Z Brassica rapa HOM05D002484 ORTHO05D002541 5.0e-14 80.9 62 54.8
Prupe.1G376000 Prunus persica HOM05D002484 ORTHO05D002541 5.0e-14 80.9 78 50.0
FAN20G2159 Fragaria x ananassa HOM05D002484 ORTHO05D002541 6.6e-14 80.5 68 55.9
FvH4_2g11470 Fragaria vesca HOM05D002484 ORTHO05D002541 8.6e-14 80.1 68 55.9
ECA236G2706 Erigeron canadensis HOM05D002484 ORTHO05D002541 1.5e-13 79.3 68 54.4
HanXRQChr03g0074221 Helianthus annuus HOM05D002484 ORTHO05D002541 1.5e-13 79.3 51 60.8
HanXRQChr03g0074231 Helianthus annuus HOM05D002484 ORTHO05D002541 1.5e-13 79.3 51 60.8
HanXRQChr03g0074241 Helianthus annuus HOM05D002484 ORTHO05D002541 1.5e-13 79.3 51 60.8
BolC8t49576H Brassica oleracea HOM05D002484 ORTHO05D002541 1.9e-13 79.0 79 45.6
Sp1g17450 Schrenkiella parvula HOM05D002484 ORTHO05D002541 1.9e-13 79.0 69 50.7
AL1G32330 Arabidopsis lyrata HOM05D002484 ORTHO05D002541 2.5e-13 78.6 69 49.3
BcaB03g12908 Brassica carinata HOM05D002484 ORTHO05D002541 2.5e-13 78.6 70 50.0
BraA08t34910Z Brassica rapa HOM05D002484 ORTHO05D002541 2.5e-13 78.6 70 50.0
Migut.N00483 Erythranthe guttata HOM05D002484 ORTHO05D002541 3.3e-13 78.2 83 44.6
AT1G19610 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 4.3e-13 77.8 69 47.8
Carub.0001s1915 Capsella rubella HOM05D002484 ORTHO05D002541 4.3e-13 77.8 72 50.0
RcHm_v2.0_Chr6g0301471 Rosa chinensis HOM05D002484 ORTHO05D002541 5.6e-13 77.4 73 49.3
Atru.chr13.431 Acer truncatum HOM05D002484 ORTHO05D002541 7.3e-13 77.0 69 52.2
Sed0028225 Sechium edule HOM05D002484 ORTHO05D002541 7.3e-13 77.0 71 46.5
TWI75G1456 Tripterygium wilfordii HOM05D002484 ORTHO05D002541 7.3e-13 77.0 71 43.7
Aa31LG7G4230 Aethionema arabicum HOM05D002484 ORTHO05D002541 9.5e-13 76.6 53 56.6
COL.COLO4_25963 Corchorus olitorius HOM05D002484 ORTHO05D002541 1.2e-12 76.3 76 48.7
Thhalv10009242m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 1.2e-12 76.3 67 47.8
Medtr8g012805 Medicago truncatula HOM05D002484 ORTHO05D002541 1.2e-12 76.3 70 55.7
FAN20G1957 Fragaria x ananassa HOM05D002484 ORTHO05D002541 1.6e-12 75.9 73 49.3
Atru.chr5.3054 Acer truncatum HOM05D002484 ORTHO05D002541 2.8e-12 75.1 80 42.5
COL.COLO4_25965 Corchorus olitorius HOM05D002484 ORTHO05D002541 2.8e-12 75.1 79 49.4
TWI56G0984 Tripterygium wilfordii HOM05D002484 ORTHO05D002541 3.6e-12 74.7 66 53.0
Psat4g203640 Pisum sativum HOM05D002484 ORTHO05D002541 4.7e-12 74.3 80 47.5
DCAR_001564 Daucus carota HOM05D002484 ORTHO05D002541 8.1e-12 73.6 72 51.4
Medtr8g012785 Medicago truncatula HOM05D002484 ORTHO05D002541 8.1e-12 73.6 51 62.7
Peaxi162Scf00324g00717 Petunia axillaris HOM05D002484 ORTHO05D002541 8.1e-12 73.6 59 47.5
TWI79G0221 Tripterygium wilfordii HOM05D002484 ORTHO05D002541 1.4e-11 72.8 71 43.7
HanXRQChr16g0506041 Helianthus annuus HOM05D002484 ORTHO05D002541 5.2e-11 70.9 78 37.2
Thhalv10019399m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 6.8e-11 70.5 72 48.6
Thecc.08G031200 Theobroma cacao HOM05D002484 ORTHO05D002541 6.8e-11 70.5 53 54.7
Thhalv10029442m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 1.2e-10 69.7 71 45.1
MELO3C018229.2 Cucumis melo HOM05D002484 ORTHO05D002541 1.5e-10 69.3 76 50.0
TPR.G17112 Trifolium pratense HOM05D002484 ORTHO05D002541 2.0e-10 68.9 69 44.9
BcaB02g07044 Brassica carinata HOM05D002484 ORTHO05D002541 2.6e-10 68.6 72 48.6
BcaC08g45552 Brassica carinata HOM05D002484 ORTHO05D002541 2.6e-10 68.6 82 47.6
C06p32340 Brassica napus HOM05D002484 ORTHO05D002541 2.6e-10 68.6 82 47.6
Carub.0007s0110 Capsella rubella HOM05D002484 ORTHO05D002541 2.6e-10 68.6 72 45.8
Sp5g30970 Schrenkiella parvula HOM05D002484 ORTHO05D002541 2.6e-10 68.6 72 48.6
CsaV3_3G044510 Cucumis sativus L. HOM05D002484 ORTHO05D002541 3.4e-10 68.2 72 47.2
CARHR247530 Cardamine hirsuta HOM05D002484 ORTHO05D002541 4.4e-10 67.8 71 40.8
Actinidia25332 Actinidia chinensis HOM05D002484 ORTHO05D002541 5.8e-10 67.4 79 46.8
AL7G45400 Arabidopsis lyrata HOM05D002484 ORTHO05D002541 5.8e-10 67.4 70 48.6
AL7G11150 Arabidopsis lyrata HOM05D002484 ORTHO05D002541 7.5e-10 67.0 71 43.7
BcaNung01275 Brassica carinata HOM05D002484 ORTHO05D002541 7.5e-10 67.0 53 52.8
DCAR_028972 Daucus carota HOM05D002484 ORTHO05D002541 7.5e-10 67.0 47 53.2
Lsat_1_v5_gn_7_90800 Lactuca sativa HOM05D002484 ORTHO05D002541 7.5e-10 67.0 61 42.6
MD08G1027500 Malus domestica HOM05D002484 ORTHO05D002541 7.5e-10 67.0 51 52.9
Nn3g20428 Nelumbo nucifera HOM05D002484 ORTHO05D002541 7.5e-10 67.0 75 41.3
PGR031G0268 Punica granatum HOM05D002484 ORTHO05D002541 7.5e-10 67.0 78 43.6
BcaC08g43338 Brassica carinata HOM05D002484 ORTHO05D002541 9.9e-10 66.6 53 54.7
A05p26930 Brassica napus HOM05D002484 ORTHO05D002541 9.9e-10 66.6 72 45.8
C01p00390 Brassica napus HOM05D002484 ORTHO05D002541 9.9e-10 66.6 72 45.8
BraA05t21573Z Brassica rapa HOM05D002484 ORTHO05D002541 9.9e-10 66.6 72 45.8
TPR.G11190 Trifolium pratense HOM05D002484 ORTHO05D002541 9.9e-10 66.6 69 47.8
A07p41390 Brassica napus HOM05D002484 ORTHO05D002541 1.3e-09 66.2 72 45.8
BraA07t31672Z Brassica rapa HOM05D002484 ORTHO05D002541 1.3e-09 66.2 72 45.8
Sp5g30950 Schrenkiella parvula HOM05D002484 ORTHO05D002541 1.7e-09 65.9 72 45.8
Carub.0007s3201 Capsella rubella HOM05D002484 ORTHO05D002541 2.2e-09 65.5 72 45.8
Duzib248G1325 Durio zibethinus HOM05D001795 ORTHO05D002541 2.2e-09 65.5 52 53.8
Thhalv10019398m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 2.2e-09 65.5 72 45.8
Psat4g205640 Pisum sativum HOM05D002484 ORTHO05D002541 2.2e-09 65.5 72 47.2
BcaB02g07045 Brassica carinata HOM05D002484 ORTHO05D002541 3.7e-09 64.7 73 46.6
AUR62015448 Chenopodium quinoa HOM05D000074 ORTHO05D000696 3.7e-09 64.7 59 44.1
Ciclev10029711m.g Citrus clementina HOM05D002484 ORTHO05D002541 3.7e-09 64.7 71 40.8
Thhalv10019395m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 3.7e-09 64.7 73 47.9
Aqoxy4G00455 Aquilegia oxysepala HOM05D002484 ORTHO05D002541 4.9e-09 64.3 53 50.9
BcaB05g24952 Brassica carinata HOM05D002484 ORTHO05D002541 4.9e-09 64.3 73 46.6
BcaC03g15629 Brassica carinata HOM05D002484 ORTHO05D002541 4.9e-09 64.3 73 46.6
C02p33630 Brassica napus HOM05D002484 ORTHO05D002541 4.9e-09 64.3 73 46.6
C06p32380 Brassica napus HOM05D002484 ORTHO05D002541 4.9e-09 64.3 82 45.1
BolC2t09341H Brassica oleracea HOM05D002484 ORTHO05D002541 4.9e-09 64.3 73 46.6
ECA236G2297 Erigeron canadensis HOM05D002484 ORTHO05D002541 4.9e-09 64.3 68 41.2
PSO302G0221 Papaver somniferum HOM05D018786 ORTHO05D002541 4.9e-09 64.3 81 40.7
Aqoxy5G01512 Aquilegia oxysepala HOM05D002484 ORTHO05D002541 6.4e-09 63.9 73 43.8
AL2G35840 Arabidopsis lyrata HOM05D002484 ORTHO05D002541 6.4e-09 63.9 81 42.0
arahy.Tifrunner.gnm1.ann1.81M2S6 Arachis hypogaea HOM05D002484 ORTHO05D002541 6.4e-09 63.9 83 41.0
BcaC08g47321 Brassica carinata HOM05D002484 ORTHO05D002541 6.4e-09 63.9 73 45.2
C06p49790 Brassica napus HOM05D002484 ORTHO05D002541 6.4e-09 63.9 73 45.2
BcaC08g45554 Brassica carinata HOM05D002484 ORTHO05D002541 8.3e-09 63.5 81 44.4
BcaC08g45556 Brassica carinata HOM05D002484 ORTHO05D002541 8.3e-09 63.5 81 44.4
A02p20270 Brassica napus HOM05D002484 ORTHO05D002541 8.3e-09 63.5 71 47.9
A07p41370 Brassica napus HOM05D002484 ORTHO05D002541 8.3e-09 63.5 73 46.6
BraA02t07061Z Brassica rapa HOM05D002484 ORTHO05D002541 8.3e-09 63.5 71 47.9
BraA07t31670Z Brassica rapa HOM05D002484 ORTHO05D002541 8.3e-09 63.5 73 46.6
Duzib093G0380 Durio zibethinus HOM05D002484 ORTHO05D002541 8.3e-09 63.5 53 52.8
Thhalv10019397m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 8.3e-09 63.5 73 46.6
BolC6t38355H Brassica oleracea HOM05D002484 ORTHO05D002541 1.1e-08 63.2 81 40.7
Thhalv10019396m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 1.1e-08 63.2 67 44.8
BcaC08g47074 Brassica carinata HOM05D002484 ORTHO05D002541 1.4e-08 62.8 81 44.4
A07p28700 Brassica napus HOM05D002484 ORTHO05D002541 1.4e-08 62.8 72 45.8
C06p32330 Brassica napus HOM05D002484 ORTHO05D002541 1.4e-08 62.8 72 45.8
BraA07t30510Z Brassica rapa HOM05D002484 ORTHO05D002541 1.4e-08 62.8 72 45.8
Carub.0002s2271 Capsella rubella HOM05D002484 ORTHO05D002541 1.4e-08 62.8 73 43.8
FAN20G0586 Fragaria x ananassa HOM05D002484 ORTHO05D002541 1.4e-08 62.8 80 41.2
Medtr8g012860 Medicago truncatula HOM05D002484 ORTHO05D002541 1.4e-08 62.8 79 41.8
Medtr8g012875 Medicago truncatula HOM05D002484 ORTHO05D002541 1.4e-08 62.8 75 45.3
Aqoxy4G00457 Aquilegia oxysepala HOM05D002484 ORTHO05D002541 1.9e-08 62.4 75 44.0
AT2G26010 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 1.9e-08 62.4 81 40.7
A07p41360 Brassica napus HOM05D002484 ORTHO05D002541 1.9e-08 62.4 73 46.6
BraA07t31669Z Brassica rapa HOM05D002484 ORTHO05D002541 1.9e-08 62.4 73 46.6
Lsat_1_v5_gn_7_90700 Lactuca sativa HOM05D002484 ORTHO05D002541 1.9e-08 62.4 63 44.4
C02p33650 Brassica napus HOM05D002484 ORTHO05D002541 2.4e-08 62.0 73 42.5
BolC2t09339H Brassica oleracea HOM05D002484 ORTHO05D002541 2.4e-08 62.0 73 42.5
HanXRQChr04g0128041 Helianthus annuus HOM05D002484 ORTHO05D002541 2.4e-08 62.0 66 39.4
AL2G35830 Arabidopsis lyrata HOM05D002484 ORTHO05D002541 3.2e-08 61.6 51 52.9
BcaB05g24945 Brassica carinata HOM05D002484 ORTHO05D002541 3.2e-08 61.6 73 45.2
BcaB05g24946 Brassica carinata HOM05D002484 ORTHO05D002541 3.2e-08 61.6 73 45.2
Carub.0002s2274 Capsella rubella HOM05D002484 ORTHO05D002541 3.2e-08 61.6 81 42.0
Lsat_1_v5_gn_7_90221 Lactuca sativa HOM05D002484 ORTHO05D002541 3.2e-08 61.6 68 42.6
Lsat_1_v5_gn_7_90580 Lactuca sativa HOM05D002484 ORTHO05D002541 3.2e-08 61.6 57 47.4
AT1G75830 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 4.1e-08 61.2 81 40.7
A02p20250 Brassica napus HOM05D002484 ORTHO05D002541 4.1e-08 61.2 73 42.5
BraA02t07059Z Brassica rapa HOM05D002484 ORTHO05D002541 4.1e-08 61.2 73 42.5
Carub.0002s2268 Capsella rubella HOM05D002484 ORTHO05D002541 4.1e-08 61.2 73 42.5
CARHR069370 Cardamine hirsuta HOM05D002484 ORTHO05D002541 4.1e-08 61.2 71 45.1
Glyma.18G027700 Glycine max HOM05D002484 ORTHO05D002541 4.1e-08 61.2 50 52.0
AT5G44430 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 5.4e-08 60.8 81 40.7
Carub.0002s2269 Capsella rubella HOM05D002484 ORTHO05D002541 5.4e-08 60.8 73 42.5
Medtr8g012800 Medicago truncatula HOM05D002484 ORTHO05D002541 5.4e-08 60.8 79 41.8
BcaC03g15628 Brassica carinata HOM05D002484 ORTHO05D002541 7.1e-08 60.5 56 46.4
Carub.0002s2270 Capsella rubella HOM05D002484 ORTHO05D002541 7.1e-08 60.5 72 43.1
CARHR069280 Cardamine hirsuta HOM05D002484 ORTHO05D002541 7.1e-08 60.5 73 42.5
Thhalv10000662m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 7.1e-08 60.5 72 44.4
Solyc01g011495.1 Solanum lycopersicum HOM05D002484 ORTHO05D002541 7.1e-08 60.5 67 44.8
AT5G44420 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 9.2e-08 60.1 51 51.0
AT2G26020 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 1.2e-07 59.7 71 43.7
CARHR284300 Cardamine hirsuta HOM05D002484 ORTHO05D002541 1.2e-07 59.7 73 42.5
CARHR069310 Cardamine hirsuta HOM05D002484 ORTHO05D002541 2.1e-07 58.9 73 41.1
BcaC08g45551 Brassica carinata HOM05D002484 ORTHO05D002541 2.7e-07 58.5 73 39.7
CAN.G559.4 Capsicum annuum HOM05D002484 ORTHO05D002541 2.7e-07 58.5 75 40.0
ECA236G4765 Erigeron canadensis HOM05D002484 ORTHO05D002541 2.7e-07 58.5 67 43.3
Lsat_1_v5_gn_7_90281 Lactuca sativa HOM05D002484 ORTHO05D002541 2.7e-07 58.5 54 48.1
A08p29750 Brassica napus HOM05D002484 ORTHO05D002541 4.6e-07 57.8 40 52.5
C08p19530 Brassica napus HOM05D002484 ORTHO05D002541 4.6e-07 57.8 40 52.5
Medtr8g023090 Medicago truncatula HOM05D002484 ORTHO05D002541 6.0e-07 57.4 76 39.5
Carub.0002s1189 Capsella rubella HOM05D002484 ORTHO05D002541 7.8e-07 57.0 81 38.3
Nitab4.5_0000023g0290 Nicotiana tabacum HOM05D002484 ORTHO05D002541 7.8e-07 57.0 65 40.0
Thhalv10019394m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 1.0e-06 56.6 76 40.8
SHI09116 Sapria himalayana HOM05D002484 ORTHO05D002541 1.0e-06 56.6 66 40.9
HanXRQChr06g0182141 Helianthus annuus HOM05D002484 ORTHO05D002541 1.3e-06 56.2 75 40.0
Atru.chr5.3053 Acer truncatum HOM05D002484 ORTHO05D002541 1.7e-06 55.8 56 46.4
Carub.0002s2272 Capsella rubella HOM05D002484 ORTHO05D002541 1.7e-06 55.8 81 37.0
Carub.0002s2273 Capsella rubella HOM05D002484 ORTHO05D002541 1.7e-06 55.8 73 39.7
CARHR069270 Cardamine hirsuta HOM05D002484 ORTHO05D002541 3.0e-06 55.1 81 37.0
CARHR069290 Cardamine hirsuta HOM05D002484 ORTHO05D002541 5.1e-06 54.3 81 40.7
Medtr8g012870 Medicago truncatula HOM05D002484 ORTHO05D002541 5.1e-06 54.3 74 40.5
BcaC08g47323 Brassica carinata HOM05D002484 ORTHO05D002541 6.6e-06 53.9 46 47.8


User provided reference genes

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