Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1136G145 Amborella trichopoda HOM05D006135 ORTHO05D007533 1.9e-156 555.8 280 100.0
Hma1.2p1_0357F.1_g134610 Hydrangea macrophylla HOM05D006135 ORTHO05D007533 2.5e-97 359.4 255 69.8
QL03p071327 Quercus lobata HOM05D006135 ORTHO05D007533 2.5e-97 359.4 255 69.8
CSS0045883 Camellia sinensis var. sinensis HOM05D006135 ORTHO05D007533 2.8e-96 355.9 255 69.8
CiPaw.06G091600 Carya illinoinensis HOM05D006135 ORTHO05D007533 3.7e-96 355.5 255 69.4
TAR622G1353 Trochodendron aralioides HOM05D006135 ORTHO05D007533 3.7e-96 355.5 255 70.2
Sabra10G0121200 Salix brachista HOM05D006135 ORTHO05D007533 6.3e-96 354.8 255 68.2
Ciclev10032231m.g Citrus clementina HOM05D006135 ORTHO05D007533 1.1e-95 354.0 255 68.2
Eucgr.G02457 Eucalyptus grandis HOM05D006135 ORTHO05D007533 1.1e-95 354.0 255 69.4
PSO170G2502 Papaver somniferum HOM05D006135 ORTHO05D007533 1.4e-95 353.6 255 69.0
Sc04g0007660 Simmondsia chinensis HOM05D006135 ORTHO05D007533 1.4e-95 353.6 255 67.5
VMungo0331G1135 Vigna mungo HOM05D006135 ORTHO05D007533 1.4e-95 353.6 255 67.5
Phvul.010G098900 Phaseolus vulgaris HOM05D006135 ORTHO05D007533 1.8e-95 353.2 255 67.5
Phvul.011G076500 Phaseolus vulgaris HOM05D006135 ORTHO05D007533 1.8e-95 353.2 255 67.5
MBI03_g07691_MAGBIO Magnolia biondii HOM05D006135 ORTHO05D007533 2.4e-95 352.8 280 67.1
PGR119G0479 Punica granatum HOM05D006135 ORTHO05D007533 2.4e-95 352.8 254 68.1
Lj3g0000255 Lotus japonicus HOM05D006135 ORTHO05D007533 4.1e-95 352.1 255 66.3
Rhsim08G0202600 Rhododendron simsii HOM05D006135 ORTHO05D007533 9.0e-95 350.9 255 67.1
COL.COLO4_27903 Corchorus olitorius HOM05D006135 ORTHO05D007533 1.5e-94 350.1 254 68.5
Lalb_Chr10g0096961 Lupinus albus HOM05D006135 ORTHO05D007533 2.0e-94 349.7 255 66.7
Cpa.g.sc1.112 Carica papaya HOM05D006135 ORTHO05D007533 2.6e-94 349.4 255 67.5
Glyma.07G070800 Glycine max HOM05D006135 ORTHO05D007533 3.4e-94 349.0 255 67.1
Manes.07G067750 Manihot esculenta HOM05D006135 ORTHO05D007533 4.5e-94 348.6 255 65.9
Manes.07G067800 Manihot esculenta HOM05D006135 ORTHO05D007533 4.5e-94 348.6 255 65.9
RcHm_v2.0_Chr4g0438561 Rosa chinensis HOM05D006135 ORTHO05D007533 5.9e-94 348.2 255 67.5
MELO3C011427.2 Cucumis melo HOM05D006135 ORTHO05D007533 1.7e-93 346.7 254 67.7
Prupe.1G285000 Prunus persica HOM05D006135 ORTHO05D007533 1.7e-93 346.7 255 67.1
Gohir.A03G103900 Gossypium hirsutum HOM05D006135 ORTHO05D007533 2.2e-93 346.3 254 66.9
Sed0023480 Sechium edule HOM05D006135 ORTHO05D007533 2.2e-93 346.3 255 67.1
EL10Ac6g14988 Beta vulgaris HOM05D006135 ORTHO05D007533 2.9e-93 345.9 255 68.2
AUR62013291 Chenopodium quinoa HOM05D006135 ORTHO05D007533 2.9e-93 345.9 255 66.3
Sabra08G0071100 Salix brachista HOM05D006135 ORTHO05D007533 2.9e-93 345.9 255 67.1
Cc11_g12150 Coffea canephora HOM05D006135 ORTHO05D007533 3.8e-93 345.5 254 66.9
Duzib268G0538 Durio zibethinus HOM05D006135 ORTHO05D007533 5.0e-93 345.1 255 66.3
Gohir.D02G129100 Gossypium hirsutum HOM05D006135 ORTHO05D007533 5.0e-93 345.1 254 66.9
Gorai.005G144800 Gossypium raimondii HOM05D006135 ORTHO05D007533 5.0e-93 345.1 254 66.9
CsaV3_6G032530 Cucumis sativus L. HOM05D006135 ORTHO05D007533 6.5e-93 344.7 254 68.1
CsaV3_6G033610 Cucumis sativus L. HOM05D006135 ORTHO05D007533 6.5e-93 344.7 254 68.1
Zm00001eb298610 Zea mays HOM05D006135 ORTHO05D007533 1.1e-92 344.0 254 68.1
AUR62007931 Chenopodium quinoa HOM05D006135 ORTHO05D007533 1.4e-92 343.6 255 65.9
Dinv34082 Davidia involucrata HOM05D006135 ORTHO05D008017 1.4e-92 343.6 255 68.2
Potri.008G094600 Populus trichocarpa HOM05D006135 ORTHO05D007533 2.5e-92 342.8 255 66.3
FAN07G2159 Fragaria x ananassa HOM05D006135 ORTHO05D007533 3.2e-92 342.4 255 66.7
FAN12G3645 Fragaria x ananassa HOM05D006135 ORTHO05D007533 3.2e-92 342.4 255 66.7
MD16G1062500 Malus domestica HOM05D006135 ORTHO05D007533 4.2e-92 342.0 255 66.3
Peaxi162Scf00155g00910 Petunia axillaris HOM05D006135 ORTHO05D007533 4.2e-92 342.0 254 66.9
Migut.L01201 Erythranthe guttata HOM05D006135 ORTHO05D007533 7.2e-92 341.3 254 65.7
Thecc.02G333100 Theobroma cacao HOM05D006135 ORTHO05D007533 7.2e-92 341.3 254 65.7
Oeu004576.4 Olea europaea HOM05D006135 ORTHO05D007533 1.2e-91 340.5 254 66.5
PSO017G0525 Papaver somniferum HOM05D006135 ORTHO05D007533 1.2e-91 340.5 255 68.6
MSTRG.745 Avicennia marina HOM05D006135 ORTHO05D007533 1.6e-91 340.1 254 67.3
FvH4_4g30260 Fragaria vesca HOM05D006135 ORTHO05D007533 1.6e-91 340.1 255 66.3
FAN17G2903 Fragaria x ananassa HOM05D006135 ORTHO05D007533 1.6e-91 340.1 255 65.9
Lj6P780T42 Lonicera japonica HOM05D006135 ORTHO05D007533 1.6e-91 340.1 255 68.2
Atru.chr11.1655 Acer truncatum HOM05D006135 ORTHO05D007533 2.1e-91 339.7 258 65.9
CANSAT64G1447 Cannabis sativa HOM05D006135 ORTHO05D007533 4.6e-91 338.6 255 67.1
Aa31LG2G7130 Aethionema arabicum HOM05D006135 ORTHO05D007533 1.0e-90 337.4 254 66.1
CANSAT64G3010 Cannabis sativa HOM05D006135 ORTHO05D007533 1.8e-90 336.7 255 66.3
ECA246G3492 Erigeron canadensis HOM05D006135 ORTHO05D007533 1.8e-90 336.7 255 65.9
FAN22G2161 Fragaria x ananassa HOM05D006135 ORTHO05D007533 1.8e-90 336.7 255 65.1
Sp1g12090 Schrenkiella parvula HOM05D006135 ORTHO05D007533 1.8e-90 336.7 254 65.7
SalBow2G2095 Salvia bowleyana HOM05D006135 ORTHO05D007533 2.3e-90 336.3 254 65.7
PGSC0003DMG400005786 Solanum tuberosum HOM05D006135 ORTHO05D007533 3.9e-90 335.5 254 65.7
HanXRQChr12g0375331 Helianthus annuus HOM05D006135 ORTHO05D007533 1.1e-89 334.0 255 65.5
Sopen08g004100 Solanum pennellii HOM05D006135 ORTHO05D007533 1.1e-89 334.0 254 65.0
CAN.G792.64 Capsicum annuum HOM05D006135 ORTHO05D007533 2.0e-89 333.2 254 64.6
CDE04G1019 Ceratophyllum demersum HOM05D006135 ORTHO05D007533 2.0e-89 333.2 256 64.8
AL1G25700 Arabidopsis lyrata HOM05D006135 ORTHO05D007533 4.3e-89 332.0 254 65.0
TAR374G0384 Trochodendron aralioides HOM05D006135 ORTHO05D007533 4.3e-89 332.0 257 67.7
THA.LOC104824063 Tarenaya hassleriana HOM05D006135 ORTHO05D007533 7.4e-89 331.3 256 64.1
BraA08t35146Z Brassica rapa HOM05D006135 ORTHO05D007533 1.3e-88 330.5 254 64.6
Carub.0001s1357 Capsella rubella HOM05D006135 ORTHO05D007533 1.3e-88 330.5 254 64.6
A09p62650 Brassica napus HOM05D006135 ORTHO05D007533 2.2e-88 329.7 254 64.6
CARHR014240 Cardamine hirsuta HOM05D006135 ORTHO05D007533 2.2e-88 329.7 254 64.2
BcaC07g41617 Brassica carinata HOM05D006135 ORTHO05D007533 2.8e-88 329.3 254 64.6
C08p46210 Brassica napus HOM05D006135 ORTHO05D007533 2.8e-88 329.3 254 64.6
BolC8t52170H Brassica oleracea HOM05D006135 ORTHO05D007533 2.8e-88 329.3 254 64.6
SalBow6G2218 Salvia bowleyana HOM05D006135 ORTHO05D007533 2.8e-88 329.3 246 65.4
BcaB03g13127 Brassica carinata HOM05D006135 ORTHO05D007533 8.2e-88 327.8 254 63.8
BcaB08g34333 Brassica carinata HOM05D006135 ORTHO05D007533 8.2e-88 327.8 254 64.2
A08p32230 Brassica napus HOM05D006135 ORTHO05D007533 1.4e-87 327.0 254 63.8
TPR.G19440 Trifolium pratense HOM05D006135 ORTHO05D007533 3.1e-87 325.9 256 62.9
Lsat_1_v5_gn_3_56041 Lactuca sativa HOM05D006135 ORTHO05D007533 4.1e-87 325.5 255 63.1
AT1G13870 Arabidopsis thaliana HOM05D006135 ORTHO05D007533 5.3e-87 325.1 254 63.8
BraA09t41629Z Brassica rapa HOM05D006135 ORTHO05D007533 5.3e-87 325.1 254 64.2
Aa31LG1G1130 Aethionema arabicum HOM05D006135 ORTHO05D007533 6.9e-87 324.7 254 62.6
Ah.04g155380 Amaranthus hybridus HOM05D001254 ORTHO05D007533 6.9e-87 324.7 252 63.5
Medtr8g030830 Medicago truncatula HOM05D006135 ORTHO05D007533 2.6e-86 322.8 257 62.6
BcaC07g38705 Brassica carinata HOM05D006135 ORTHO05D007533 4.5e-86 322.0 254 63.4
C08p16350 Brassica napus HOM05D006135 ORTHO05D007533 4.5e-86 322.0 254 63.4
BolC8t49259H Brassica oleracea HOM05D006135 ORTHO05D007533 4.5e-86 322.0 254 63.4
Psat4g154880 Pisum sativum HOM05D006135 ORTHO05D007533 4.5e-86 322.0 256 63.3
Medtr8g446960 Medicago truncatula HOM05D006135 ORTHO05D007533 7.7e-86 321.2 257 62.3
Aqoxy6G00083 Aquilegia oxysepala HOM05D006135 ORTHO05D007533 5.0e-85 318.5 224 71.0
HPP92_017746 Vanilla planifolia HOM05D006135 ORTHO05D007533 4.2e-84 315.5 239 66.1
unitig_22.g6497 Utricularia gibba HOM05D006135 ORTHO05D007533 2.7e-83 312.8 255 60.4
SGA_v2.0_scaffold308G48068 Striga asiatica HOM05D006135 ORTHO05D007533 8.8e-82 307.8 257 59.9
SMO115G0347 Selaginella moellendorffii HOM05D006135 ORTHO05D007533 2.0e-81 306.6 256 62.5
SGA_v2.0_scaffold36G14447 Striga asiatica HOM05D006135 ORTHO05D007533 2.0e-78 296.6 257 58.8
Mapoly0008s0061 Marchantia polymorpha HOM05D006135 ORTHO05D007533 2.9e-77 292.7 255 57.3
Pp3c10_170 Physcomitrium patens HOM05D006135 ORTHO05D007533 3.2e-76 289.3 256 57.8
HanXRQChr13g0417131 Helianthus annuus HOM05D006135 ORTHO05D007533 9.4e-76 287.7 197 70.1
Solyc08g008250.3 Solanum lycopersicum HOM05D006135 ORTHO05D007533 2.1e-75 286.6 196 69.4
SHI21260 Sapria himalayana HOM05D006135 ORTHO05D007533 3.8e-69 265.8 257 54.1
Nitab4.5_0000607g0040 Nicotiana tabacum HOM05D006135 ORTHO05D007533 3.0e-66 256.1 220 59.1
ClCG08G010310 Citrullus lanatus HOM05D006135 ORTHO05D008017 6.8e-66 255.0 174 69.0
Nitab4.5_0000100g0120 Nicotiana tabacum HOM05D006135 ORTHO05D007533 3.4e-65 252.7 179 66.5
Haze_11974 Corylus avellana HOM05D006135 ORTHO05D007533 7.5e-65 251.5 161 74.5
Duzib251G0397 Durio zibethinus HOM05D006135 ORTHO05D007533 7.0e-63 245.0 183 63.4
CBR_g32247 Chara braunii HOM05D006135 ORTHO05D007533 2.0e-62 243.4 291 49.5
SalBow6G7020 Salvia bowleyana HOM05D006135 ORTHO05D007533 1.7e-61 240.4 170 65.9
vmacro19077 Vaccinium macrocarpon HOM05D006135 ORTHO05D007533 2.9e-61 239.6 161 68.3
SalBow2G1772 Salvia bowleyana HOM05D006135 ORTHO05D007533 5.0e-61 238.8 166 67.5
Cre17.g711050 Chlamydomonas reinhardtii HOM05D006135 ORTHO05D007533 2.2e-48 196.8 254 43.7
Nn3g17430 Nelumbo nucifera HOM05D006135 ORTHO05D007533 5.6e-44 182.2 255 43.5
MCO02G221 Micromonas commoda HOM05D006135 ORTHO05D007533 1.2e-38 164.5 183 48.1
SEGI_02005 Sequoiadendron giganteum HOM05D006135 ORTHO05D007533 2.0e-38 163.7 116 72.4
PRCOL_00001916 Prasinoderma coloniale HOM05D006135 ORTHO05D007533 1.6e-35 154.1 169 47.9
AagrBONN_evm.TU.Sc2ySwM_362.1915 Anthoceros agrestis HOM05D006135 ORTHO05D007533 6.2e-27 125.6 72 77.8
Dinv16720 Davidia involucrata HOM05D006135 ORTHO05D007533 6.2e-27 125.6 88 62.5
Pp3c8_25320 Physcomitrium patens HOM05D006135 ORTHO05D007533 3.1e-26 123.2 113 54.0
Os11g0312340 Oryza sativa ssp. japonica HOM05D006135 ORTHO05D007533 7.1e-23 112.1 92 65.2
Cfa026301 Carpinus fangiana HOM05D006135 ORTHO05D007533 3.0e-21 106.7 276 30.8
Oeu025274.1 Olea europaea HOM05D006135 ORTHO05D007533 4.7e-19 99.4 87 58.6
SEGI_31918 Sequoiadendron giganteum HOM05D006135 ORTHO05D007533 8.9e-18 95.1 61 68.9
HPP92_017676 Vanilla planifolia HOM05D006135 ORTHO05D007533 4.9e-16 89.4 145 41.4
Lalb_Chr17g0339631 Lupinus albus HOM05D006135 ORTHO05D007533 2.1e-11 73.9 70 55.7
GSVIVG01012190001 Vitis vinifera HOM05D001577 ORTHO05D008017 4.8e-11 72.8 87 49.4


User provided reference genes

Program Settings