Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1127G194 Amborella trichopoda HOM05D006403 ORTHO05D008130 2.5e-136 488.8 247 100.0
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 2.6e-98 362.5 244 74.6
MBI17_g12885_MAGBIO Magnolia biondii HOM05D006403 ORTHO05D008130 1.6e-95 353.2 276 66.7
Ciclev10001887m.g Citrus clementina HOM05D006403 ORTHO05D008130 2.7e-95 352.4 218 80.7
Dinv41688 Davidia involucrata HOM05D006403 ORTHO05D008130 4.7e-95 351.7 241 73.0
GSVIVG01034503001 Vitis vinifera HOM05D006403 ORTHO05D008130 4.7e-95 351.7 232 75.9
Cfa018202 Carpinus fangiana HOM05D006403 ORTHO05D008130 2.3e-94 349.4 213 82.2
CSS0028864 Camellia sinensis var. sinensis HOM05D006403 ORTHO05D008130 3.0e-94 349.0 224 77.7
COL.COLO4_36653 Corchorus olitorius HOM05D006403 ORTHO05D008130 4.0e-94 348.6 242 74.4
Haze_17907 Corylus avellana HOM05D006403 ORTHO05D008130 6.8e-94 347.8 213 81.7
CiPaw.16G062500 Carya illinoinensis HOM05D006403 ORTHO05D008130 2.0e-93 346.3 212 81.1
ClCG09G010420 Citrullus lanatus HOM05D006403 ORTHO05D008130 2.6e-93 345.9 220 78.2
Sc23g0004870 Simmondsia chinensis HOM05D006403 ORTHO05D008130 9.8e-93 344.0 232 74.1
Duzib177G0036 Durio zibethinus HOM05D006403 ORTHO05D008130 4.8e-92 341.7 232 74.6
CANSAT78G0580 Cannabis sativa HOM05D006403 ORTHO05D008130 6.3e-92 341.3 224 75.0
Aqoxy7G00855 Aquilegia oxysepala HOM05D006403 ORTHO05D008130 8.3e-92 340.9 235 71.9
MELO3C023667.2 Cucumis melo HOM05D006403 ORTHO05D008130 8.3e-92 340.9 220 77.3
Atru.chr13.1807 Acer truncatum HOM05D006403 ORTHO05D008130 1.1e-91 340.5 218 77.5
Atru.chr13.1815 Acer truncatum HOM05D006403 ORTHO05D008130 1.1e-91 340.5 218 77.5
Eucgr.F02626 Eucalyptus grandis HOM05D006403 ORTHO05D008130 1.8e-91 339.7 243 73.7
Nn8g40759 Nelumbo nucifera HOM05D006403 ORTHO05D008130 1.8e-91 339.7 216 77.8
PSO732G0029 Papaver somniferum HOM05D006403 ORTHO05D008130 3.1e-91 339.0 232 71.1
Sed0020052 Sechium edule HOM05D006403 ORTHO05D008130 4.1e-91 338.6 220 77.3
CsaV3_7G024130 Cucumis sativus L. HOM05D006403 ORTHO05D008130 5.4e-91 338.2 220 76.8
AUR62023390 Chenopodium quinoa HOM05D006403 ORTHO05D008130 7.0e-91 337.8 217 77.0
Nitab4.5_0000159g0220 Nicotiana tabacum HOM05D006403 ORTHO05D008130 7.0e-91 337.8 219 76.7
Rhsim08G0049700 Rhododendron simsii HOM05D006403 ORTHO05D008130 7.0e-91 337.8 221 75.6
AUR62013765 Chenopodium quinoa HOM05D006403 ORTHO05D008130 9.1e-91 337.4 231 73.2
Potri.013G114500 Populus trichocarpa HOM05D006403 ORTHO05D008130 9.1e-91 337.4 221 76.5
Thecc.08G202600 Theobroma cacao HOM05D006403 ORTHO05D008130 9.1e-91 337.4 231 74.5
Oeu017876.2 Olea europaea HOM05D006403 ORTHO05D008130 1.2e-90 337.0 234 71.4
Hund27413 Selenicereus undatus HOM05D006403 ORTHO05D008130 1.6e-90 336.7 232 74.1
SGA_v2.0_scaffold24G10549 Striga asiatica HOM05D006403 ORTHO05D008130 1.6e-90 336.7 244 69.3
Gohir.D13G125700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 2.0e-90 336.3 242 71.1
Gorai.013G140800 Gossypium raimondii HOM05D006403 ORTHO05D008130 2.0e-90 336.3 242 71.1
Peaxi162Scf00495g00011 Petunia axillaris HOM05D006403 ORTHO05D008130 2.0e-90 336.3 219 75.8
Cc00_g04840 Coffea canephora HOM05D006403 ORTHO05D008130 2.7e-90 335.9 234 71.4
Solyc11g017200.2 Solanum lycopersicum HOM05D006403 ORTHO05D008130 2.7e-90 335.9 219 76.3
Sopen11g009110 Solanum pennellii HOM05D006403 ORTHO05D008130 2.7e-90 335.9 219 76.3
PGSC0003DMG400009235 Solanum tuberosum HOM05D006403 ORTHO05D008130 2.7e-90 335.9 219 75.8
PGR042G3834 Punica granatum HOM05D006403 ORTHO05D008130 4.5e-90 335.1 237 72.2
Gohir.A13G121700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 5.9e-90 334.7 242 71.9
PSO675G8117 Papaver somniferum HOM05D006403 ORTHO05D008130 5.9e-90 334.7 245 67.3
CAN.G61.29 Capsicum annuum HOM05D006403 ORTHO05D008130 1.0e-89 334.0 219 75.3
QL02p034075 Quercus lobata HOM05D006403 ORTHO05D008130 1.3e-89 333.6 219 76.3
Hma1.2p1_0072F.1_g038220 Hydrangea macrophylla HOM05D006403 ORTHO05D008130 2.9e-89 332.4 247 68.8
HPP92_025360 Vanilla planifolia HOM05D006403 ORTHO05D008130 8.5e-89 330.9 224 75.0
ECA233G3842 Erigeron canadensis HOM05D006403 ORTHO05D008130 1.1e-88 330.5 236 70.8
Lsat_1_v5_gn_1_12940 Lactuca sativa HOM05D006403 ORTHO05D008130 1.5e-88 330.1 232 73.3
Potri.019G085200 Populus trichocarpa HOM05D006403 ORTHO05D008130 2.5e-88 329.3 217 76.0
Manes.18G099900 Manihot esculenta HOM05D006403 ORTHO05D008130 3.2e-88 328.9 220 75.5
FAN23G0108 Fragaria x ananassa HOM05D006403 ORTHO05D008130 5.5e-88 328.2 223 74.0
EL10Ac1g00740 Beta vulgaris HOM05D006403 ORTHO05D008130 9.4e-88 327.4 231 71.9
FAN26G2688 Fragaria x ananassa HOM05D006403 ORTHO05D008130 1.2e-87 327.0 223 73.5
FAN28G0939 Fragaria x ananassa HOM05D006403 ORTHO05D008130 2.1e-87 326.2 223 73.5
Lj7A297T43 Lonicera japonica HOM05D006403 ORTHO05D008130 3.6e-87 325.5 247 67.2
RcHm_v2.0_Chr3g0495761 Rosa chinensis HOM05D006403 ORTHO05D008130 3.6e-87 325.5 230 71.3
MSTRG.25437 Avicennia marina HOM05D006403 ORTHO05D008130 4.7e-87 325.1 218 75.2
Actinidia29416 Actinidia chinensis HOM05D006403 ORTHO05D008130 6.1e-87 324.7 244 68.9
TWI32G0485 Tripterygium wilfordii HOM05D006403 ORTHO05D008130 6.1e-87 324.7 220 73.6
FvH4_1g29740 Fragaria vesca HOM05D006403 ORTHO05D008130 8.0e-87 324.3 223 73.5
FAN19G1279 Fragaria x ananassa HOM05D006403 ORTHO05D008130 8.0e-87 324.3 223 73.5
HanXRQChr02g0040151 Helianthus annuus HOM05D006403 ORTHO05D008130 8.0e-87 324.3 217 76.5
THA.LOC104800111 Tarenaya hassleriana HOM05D006403 ORTHO05D008130 1.4e-86 323.6 220 75.9
arahy.Tifrunner.gnm1.ann1.RC57KJ Arachis hypogaea HOM05D006403 ORTHO05D008130 2.3e-86 322.8 204 76.0
Duzib116G0580 Durio zibethinus HOM05D006403 ORTHO05D008130 4.0e-86 322.0 235 70.2
Sabra13G0096800 Salix brachista HOM05D005981 ORTHO05D008130 4.0e-86 322.0 227 71.8
Prupe.7G018000 Prunus persica HOM05D006403 ORTHO05D008130 8.8e-86 320.9 230 70.0
Aa31LG7G6600 Aethionema arabicum HOM05D006403 ORTHO05D008130 4.4e-85 318.5 206 79.1
Lalb_Chr19g0129801 Lupinus albus HOM05D006403 ORTHO05D008130 4.4e-85 318.5 204 74.5
AL1G36240 Arabidopsis lyrata HOM05D006403 ORTHO05D008130 5.7e-85 318.2 206 79.1
Carub.0001s2222 Capsella rubella HOM05D006403 ORTHO05D008130 5.7e-85 318.2 206 78.6
CDE07G1616 Ceratophyllum demersum HOM05D006403 ORTHO05D008130 5.7e-85 318.2 206 75.7
SalBow7G4031 Salvia bowleyana HOM05D006403 ORTHO05D008130 5.7e-85 318.2 205 76.6
MD12G1013600 Malus domestica HOM05D006403 ORTHO05D008130 7.5e-85 317.8 235 68.1
C05p21830 Brassica napus HOM05D006403 ORTHO05D008130 9.8e-85 317.4 232 72.8
Oeu000555.1 Olea europaea HOM05D006403 ORTHO05D008130 1.3e-84 317.0 242 66.9
A09p42040 Brassica napus HOM05D006403 ORTHO05D008130 1.7e-84 316.6 205 78.5
BolC5t30876H Brassica oleracea HOM05D006403 ORTHO05D008130 1.7e-84 316.6 232 72.4
Thhalv10008318m.g Eutrema salsugineum HOM05D006403 ORTHO05D008130 1.7e-84 316.6 206 78.6
AT1G22700 Arabidopsis thaliana HOM05D006403 ORTHO05D008130 2.2e-84 316.2 206 78.6
A07p14250 Brassica napus HOM05D006403 ORTHO05D008130 2.8e-84 315.8 206 78.6
BraA09t39690Z Brassica rapa HOM05D006403 ORTHO05D008130 4.9e-84 315.1 205 78.5
CARHR023070 Cardamine hirsuta HOM05D006403 ORTHO05D008130 4.9e-84 315.1 239 70.3
Lalb_Chr01g0010051 Lupinus albus HOM05D006403 ORTHO05D008130 6.3e-84 314.7 213 71.8
MD14G1011000 Malus domestica HOM05D006403 ORTHO05D008130 6.3e-84 314.7 230 70.0
BraA07t29182Z Brassica rapa HOM05D006403 ORTHO05D008130 1.4e-83 313.5 202 78.7
Sp1g20210 Schrenkiella parvula HOM05D006403 ORTHO05D008130 1.8e-83 313.2 240 70.4
C07p20970 Brassica napus HOM05D006403 ORTHO05D008130 3.1e-83 312.4 204 78.4
BcaB03g14190 Brassica carinata HOM05D006403 ORTHO05D008130 5.4e-83 311.6 202 78.2
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 7.0e-83 311.2 245 66.5
arahy.Tifrunner.gnm1.ann1.3A12IQ Arachis hypogaea HOM05D006403 ORTHO05D008130 9.1e-83 310.8 195 76.4
Lj5g0000123 Lotus japonicus HOM05D006403 ORTHO05D008130 9.1e-83 310.8 219 69.4
Migut.C01242 Erythranthe guttata HOM05D006403 ORTHO05D008130 2.9e-81 305.8 207 71.5
vmacro18286 Vaccinium macrocarpon HOM05D006403 ORTHO05D008130 6.6e-81 304.7 326 52.5
Ca_10605_v3 Cicer arietinum L. HOM05D006403 ORTHO05D008130 1.2e-79 300.4 203 71.4
Phvul.007G090400 Phaseolus vulgaris HOM05D006403 ORTHO05D008130 1.2e-79 300.4 220 69.5
Medtr1g096230 Medicago truncatula HOM05D006403 ORTHO05D008130 2.8e-79 299.3 203 70.9
BcaC06g34984 Brassica carinata HOM05D006403 ORTHO05D008130 3.6e-79 298.9 204 76.5
Glyma.20G176400 Glycine max HOM05D006403 ORTHO05D008130 3.6e-79 298.9 220 69.1
Glyma.10G215300 Glycine max HOM05D006403 ORTHO05D008130 6.1e-79 298.1 231 66.7
BolC7t42628H Brassica oleracea HOM05D006403 ORTHO05D008130 1.0e-78 297.4 204 76.0
Psat6g186640 Pisum sativum HOM05D006403 ORTHO05D008130 1.5e-77 293.5 233 63.5
Os10g0460900 Oryza sativa ssp. japonica HOM05D006403 ORTHO05D008130 2.0e-77 293.1 211 72.0
SEGI_04324 Sequoiadendron giganteum HOM05D006403 ORTHO05D008130 7.5e-77 291.2 233 64.4
Zm00001eb320270 Zea mays HOM05D006403 ORTHO05D008130 1.7e-76 290.0 211 70.6
Cpa.g.sc66.55 Carica papaya HOM05D006403 ORTHO05D008130 9.2e-75 284.3 165 83.0
unitig_747.g21467 Utricularia gibba HOM05D006403 ORTHO05D008130 3.6e-71 272.3 210 67.1
BcaB03g14188 Brassica carinata HOM05D006403 ORTHO05D008130 5.6e-64 248.4 202 66.8
AagrBONN_evm.TU.Sc2ySwM_362.2277 Anthoceros agrestis HOM05D006403 ORTHO05D008130 7.3e-64 248.1 191 61.8
Pp3c2_18600 Physcomitrium patens HOM05D006403 ORTHO05D008130 4.0e-62 242.3 190 62.6
TPR.G1762 Trifolium pratense HOM05D006403 ORTHO05D008130 5.1e-57 225.3 142 75.4
Pp3c1_20680 Physcomitrium patens HOM05D006403 ORTHO05D008130 2.6e-53 213.0 160 63.1
Mapoly0015s0041 Marchantia polymorpha HOM05D006403 ORTHO05D008130 1.1e-51 207.6 195 53.3
SMO118G0451 Selaginella moellendorffii HOM05D006403 ORTHO05D008130 1.1e-51 207.6 199 53.3
CBR_g38402 Chara braunii HOM05D006403 ORTHO05D008130 5.1e-49 198.7 185 55.7
MCO16G319 Micromonas commoda HOM05D006403 ORTHO05D008130 7.3e-48 194.9 178 51.7
Os10g0461100 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 5.2e-46 188.7 120 80.0
Cre12.g524300 Chlamydomonas reinhardtii HOM05D006403 ORTHO05D008130 8.9e-46 188.0 178 52.8
RcHm_v2.0_Chr7g0219671 Rosa chinensis HOM05D006403 ORTHO05D008130 1.4e-35 154.1 143 58.7
RcHm_v2.0_Chr2g0092511 Rosa chinensis HOM05D006403 ORTHO05D008130 2.8e-31 139.8 158 52.5
PRCOL_00002033 Prasinoderma coloniale HOM05D006403 ORTHO05D008130 4.2e-27 125.9 143 42.0
RcHm_v2.0_Chr7g0199541 Rosa chinensis HOM05D006403 ORTHO05D008130 2.2e-20 103.6 79 72.2
Hma1.2p1_0072F.1_g038240 Hydrangea macrophylla HOM05D006403 ORTHO05D228046 4.2e-19 99.4 90 62.2
Os08g0347500 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 3.0e-17 93.2 53 86.8
TPR.G20530 Trifolium pratense HOM05D006403 ORTHO05D008130 1.5e-13 80.9 61 63.9
DCAR_019223 Daucus carota HOM05D001558 ORTHO05D021140 4.1e-06 56.2 73 35.6


User provided reference genes

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