Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1127G174 Amborella trichopoda HOM05D002306 ORTHO05D006484 5.5e-56 220.7 110 100.0
ATR0602G202 Amborella trichopoda HOM05D002306 ORTHO05D006484 1.4e-51 206.1 110 93.6
Gorai.006G201800 Gossypium raimondii HOM05D002306 ORTHO05D006484 6.8e-30 134.0 92 70.7
Nn8g40946 Nelumbo nucifera HOM05D002306 ORTHO05D006484 8.9e-30 133.7 83 78.3
Gohir.A09G184900 Gossypium hirsutum HOM05D002306 ORTHO05D006484 1.2e-29 133.3 90 74.4
Gohir.D09G179800 Gossypium hirsutum HOM05D002306 ORTHO05D006484 1.2e-29 133.3 90 74.4
Duzib084G1054 Durio zibethinus HOM05D002306 ORTHO05D006484 1.5e-29 132.9 92 69.6
COL.COLO4_16787 Corchorus olitorius HOM05D002306 ORTHO05D006484 2.6e-29 132.1 92 69.6
Nn3g18952 Nelumbo nucifera HOM05D002306 ORTHO05D006484 2.6e-29 132.1 89 75.3
Haze_00198 Corylus avellana HOM05D002306 ORTHO05D005773 4.4e-29 131.3 84 77.4
TWI39G0647 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 4.4e-29 131.3 84 77.4
MBI07_g24774_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D006484 5.8e-29 131.0 90 75.6
TPR.G33626 Trifolium pratense HOM05D002306 ORTHO05D006484 5.8e-29 131.0 91 70.3
Cfa016242 Carpinus fangiana HOM05D002306 ORTHO05D006484 7.5e-29 130.6 82 78.0
Thecc.03G200700 Theobroma cacao HOM05D002306 ORTHO05D006484 7.5e-29 130.6 92 69.6
Potri.015G011500 Populus trichocarpa HOM05D002306 ORTHO05D006484 9.9e-29 130.2 82 78.0
CAN.G481.25 Capsicum annuum HOM05D002306 ORTHO05D006484 1.7e-28 129.4 92 69.6
Phvul.001G057400 Phaseolus vulgaris HOM05D002306 ORTHO05D006484 2.9e-28 128.6 88 71.6
Manes.05G190300 Manihot esculenta HOM05D002306 ORTHO05D006484 3.7e-28 128.3 82 78.0
arahy.Tifrunner.gnm1.ann1.84THGE Arachis hypogaea HOM05D002306 ORTHO05D006484 4.9e-28 127.9 88 72.7
Medtr3g091850 Medicago truncatula HOM05D002306 ORTHO05D006484 4.9e-28 127.9 90 70.0
PGSC0003DMG402018530 Solanum tuberosum HOM05D002306 ORTHO05D006484 4.9e-28 127.9 89 70.8
vmacro06392 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 4.9e-28 127.9 98 67.3
CDE11G0760 Ceratophyllum demersum HOM05D002306 ORTHO05D006484 6.4e-28 127.5 84 77.4
QL09p008635 Quercus lobata HOM05D002306 ORTHO05D006484 6.4e-28 127.5 81 77.8
Ah.07g205530 Amaranthus hybridus HOM05D002306 ORTHO05D006484 8.3e-28 127.1 83 74.7
Oeu037053.1 Olea europaea HOM05D002306 ORTHO05D006484 8.3e-28 127.1 85 72.9
Prupe.2G312900 Prunus persica HOM05D002306 ORTHO05D006484 8.3e-28 127.1 82 75.6
arahy.Tifrunner.gnm1.ann1.K9F3KZ Arachis hypogaea HOM05D002306 ORTHO05D006484 1.1e-27 126.7 82 75.6
Lj6g0020019 Lotus japonicus HOM05D002306 ORTHO05D006484 1.4e-27 126.3 91 70.3
Medtr1g007870 Medicago truncatula HOM05D002306 ORTHO05D006484 1.4e-27 126.3 82 75.6
GSVIVG01038565001 Vitis vinifera HOM05D002306 ORTHO05D006484 1.4e-27 126.3 82 76.8
CANSAT21G2118 Cannabis sativa HOM05D002306 ORTHO05D006484 1.9e-27 125.9 80 76.2
PSO135G0367 Papaver somniferum HOM05D002306 ORTHO05D006484 1.9e-27 125.9 88 70.5
Sc13g0009850 Simmondsia chinensis HOM05D002306 ORTHO05D006484 1.9e-27 125.9 81 75.3
vmacro10128 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 1.9e-27 125.9 83 74.7
Glyma.11G174073 Glycine max HOM05D002306 ORTHO05D006484 2.4e-27 125.6 81 75.3
Glyma.17G200500 Glycine max HOM05D002306 ORTHO05D006484 2.4e-27 125.6 81 75.3
Sabra12G0015400 Salix brachista HOM05D002306 ORTHO05D006484 2.4e-27 125.6 87 72.4
CsaV3_3G019760 Cucumis sativus L. HOM05D002306 ORTHO05D006484 3.2e-27 125.2 98 66.3
Atru.chr1.2784 Acer truncatum HOM05D002306 ORTHO05D006484 4.1e-27 124.8 80 76.2
Solyc03g083020.3 Solanum lycopersicum HOM05D002306 ORTHO05D006484 4.1e-27 124.8 89 69.7
Sopen03g022830 Solanum pennellii HOM05D002306 ORTHO05D006484 4.1e-27 124.8 89 69.7
Actinidia08660 Actinidia chinensis HOM05D002306 ORTHO05D006484 5.4e-27 124.4 82 74.4
arahy.Tifrunner.gnm1.ann1.CGD4UQ Arachis hypogaea HOM05D002306 ORTHO05D006484 5.4e-27 124.4 88 70.5
FAN10G3342 Fragaria x ananassa HOM05D002306 ORTHO05D006484 5.4e-27 124.4 82 74.4
PSO384G3554 Papaver somniferum HOM05D002306 ORTHO05D006484 9.2e-27 123.6 83 72.3
PSO782G0677 Papaver somniferum HOM05D002306 ORTHO05D006484 9.2e-27 123.6 85 70.6
Psat5g075320 Pisum sativum HOM05D002306 ORTHO05D006484 9.2e-27 123.6 90 67.8
Aqoxy5G04246 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 1.2e-26 123.2 88 71.6
Dinv29265 Davidia involucrata HOM05D002306 ORTHO05D006484 1.2e-26 123.2 81 75.3
PSO170G5717 Papaver somniferum HOM05D002306 ORTHO05D006484 1.2e-26 123.2 90 68.9
Hund11652 Selenicereus undatus HOM05D002306 ORTHO05D006484 1.2e-26 123.2 84 72.6
Lalb_Chr11g0066981 Lupinus albus HOM05D002306 ORTHO05D006484 1.6e-26 122.9 82 73.2
AUR62006081 Chenopodium quinoa HOM05D002306 ORTHO05D006484 2.1e-26 122.5 86 68.6
Aqoxy3G03743 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 2.7e-26 122.1 91 69.2
Os02g0305800 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 2.7e-26 122.1 88 67.0
MSTRG.8645 Avicennia marina HOM05D002306 ORTHO05D006484 3.5e-26 121.7 88 69.3
Lsat_1_v5_gn_8_5361 Lactuca sativa HOM05D002306 ORTHO05D006484 3.5e-26 121.7 85 71.8
TWI14G0402 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 3.5e-26 121.7 92 68.5
CSS0043540 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 4.6e-26 121.3 81 74.1
Sed0012841 Sechium edule HOM05D002306 ORTHO05D006484 4.6e-26 121.3 81 70.4
ECA232G1226 Erigeron canadensis HOM05D002306 ORTHO05D006484 6.0e-26 120.9 86 69.8
RcHm_v2.0_Chr1g0381471 Rosa chinensis HOM05D002306 ORTHO05D006484 6.0e-26 120.9 82 72.0
Eucgr.K00393 Eucalyptus grandis HOM05D002306 ORTHO05D006484 7.8e-26 120.6 85 70.6
TPR.G12084 Trifolium pratense HOM05D002306 ORTHO05D006484 7.8e-26 120.6 82 73.2
ClCG05G009020 Citrullus lanatus HOM05D002306 ORTHO05D006484 1.0e-25 120.2 92 62.0
MELO3C008504.2 Cucumis melo HOM05D002306 ORTHO05D006484 1.0e-25 120.2 92 63.0
FAN10G1840 Fragaria x ananassa HOM05D002306 ORTHO05D006484 1.0e-25 120.2 82 73.2
PGR042G2650 Punica granatum HOM05D002306 ORTHO05D006484 1.3e-25 119.8 81 72.8
Peaxi162Scf00740g00131 Petunia axillaris HOM05D002306 ORTHO05D006484 2.3e-25 119.0 81 72.8
CiPaw.05G197900 Carya illinoinensis HOM05D002306 ORTHO05D006484 3.9e-25 118.2 75 80.0
Cc02_g01390 Coffea canephora HOM05D002306 ORTHO05D006484 3.9e-25 118.2 92 65.2
SGA_v2.0_scaffold44G16812 Striga asiatica HOM05D002306 ORTHO05D005773 3.9e-25 118.2 89 66.3
Ciclev10023672m.g Citrus clementina HOM05D002306 ORTHO05D006484 5.1e-25 117.9 82 69.5
ECA233G2756 Erigeron canadensis HOM05D002476 ORTHO05D006484 5.1e-25 117.9 99 61.6
Migut.F00201 Erythranthe guttata HOM05D002306 ORTHO05D006484 8.6e-25 117.1 94 61.7
MD01G1222500 Malus domestica HOM05D002306 ORTHO05D006484 8.6e-25 117.1 82 70.7
MD07G1293100 Malus domestica HOM05D002306 ORTHO05D006484 8.6e-25 117.1 82 70.7
Sabra15G0009400 Salix brachista HOM05D002306 ORTHO05D006484 1.1e-24 116.7 75 80.0
Nitab4.5_0000548g0070 Nicotiana tabacum HOM05D002306 ORTHO05D006484 1.5e-24 116.3 77 75.3
VMungo0647G0954 Vigna mungo HOM05D002306 ORTHO05D006484 4.3e-24 114.8 75 76.0
EL10Ac3g05270 Beta vulgaris HOM05D002306 ORTHO05D006484 7.3e-24 114.0 76 77.6
FvH4_7g31970 Fragaria vesca HOM05D002306 ORTHO05D006484 9.5e-24 113.6 79 74.7
A10p10530 Brassica napus HOM05D002306 ORTHO05D006484 2.1e-23 112.5 82 65.9
BraA10t43137Z Brassica rapa HOM05D002306 ORTHO05D006484 2.1e-23 112.5 82 65.9
Rhsim03G0209800 Rhododendron simsii HOM05D002306 ORTHO05D006484 2.1e-23 112.5 75 76.0
Rhsim03G0210000 Rhododendron simsii HOM05D002306 ORTHO05D006484 2.1e-23 112.5 75 76.0
Rhsim03G0210100 Rhododendron simsii HOM05D002306 ORTHO05D006484 2.1e-23 112.5 75 76.0
FAN06G3491 Fragaria x ananassa HOM05D002306 ORTHO05D006484 3.6e-23 111.7 75 76.0
Psat6g034920 Pisum sativum HOM05D002306 ORTHO05D006484 4.7e-23 111.3 75 73.3
BcaC04g20513 Brassica carinata HOM05D002306 ORTHO05D006484 6.2e-23 110.9 82 64.6
C09p42750 Brassica napus HOM05D002306 ORTHO05D006484 6.2e-23 110.9 82 64.6
BolC9t57151H Brassica oleracea HOM05D002306 ORTHO05D006484 6.2e-23 110.9 82 64.6
HPP92_020719 Vanilla planifolia HOM05D002306 ORTHO05D006484 6.2e-23 110.9 84 63.1
DCAR_008946 Daucus carota HOM05D002306 ORTHO05D006484 8.1e-23 110.5 75 72.0
THA.LOC104825151 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 8.1e-23 110.5 82 67.1
Lsat_1_v5_gn_9_49781 Lactuca sativa HOM05D002306 ORTHO05D006484 1.1e-22 110.2 87 67.8
unitig_8.g4777 Utricularia gibba HOM05D002306 ORTHO05D006484 1.1e-22 110.2 85 65.9
BcaB08g35664 Brassica carinata HOM05D002306 ORTHO05D006484 1.8e-22 109.4 82 63.4
Duzib068G0867 Durio zibethinus HOM05D002306 ORTHO05D006484 1.8e-22 109.4 91 65.9
Carub.0008s1324 Capsella rubella HOM05D002306 ORTHO05D006484 3.1e-22 108.6 94 57.4
AUR62019413 Chenopodium quinoa HOM05D002306 ORTHO05D006484 3.1e-22 108.6 79 68.4
Sp6g15200 Schrenkiella parvula HOM05D002306 ORTHO05D006484 3.1e-22 108.6 82 64.6
Thhalv10022935m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 4.0e-22 108.2 80 65.0
AL8G27670 Arabidopsis lyrata HOM05D002306 ORTHO05D006484 5.2e-22 107.8 93 57.0
Potri.012G017000 Populus trichocarpa HOM05D002306 ORTHO05D006484 5.2e-22 107.8 69 78.3
AT5G53045 Arabidopsis thaliana HOM05D002306 ORTHO05D006484 6.8e-22 107.5 93 57.0
Aa31LG3G9430 Aethionema arabicum HOM05D002306 ORTHO05D006484 1.2e-21 106.7 79 65.8
CARHR266060 Cardamine hirsuta HOM05D002306 ORTHO05D006484 1.5e-21 106.3 82 63.4
arahy.Tifrunner.gnm1.ann1.XWYM96 Arachis hypogaea HOM05D002476 ORTHO05D002652 2.0e-21 105.9 75 72.0
A03p15430 Brassica napus HOM05D002306 ORTHO05D006484 2.0e-21 105.9 80 62.5
BraA03t10832Z Brassica rapa HOM05D002306 ORTHO05D006484 2.0e-21 105.9 80 62.5
BraA03t10833Z Brassica rapa HOM05D002306 ORTHO05D006484 2.0e-21 105.9 80 62.5
Ciclev10024526m.g Citrus clementina HOM05D002306 ORTHO05D006484 2.0e-21 105.9 84 65.5
CSS0043767 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 3.4e-21 105.1 75 72.0
Ciclev10023496m.g Citrus clementina HOM05D002306 ORTHO05D006484 3.4e-21 105.1 82 65.9
HanXRQChr15g0485701 Helianthus annuus HOM05D002306 ORTHO05D006484 3.4e-21 105.1 75 72.0
Thhalv10015123m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 1.3e-20 103.2 80 63.8
A03p15460 Brassica napus HOM05D002306 ORTHO05D006484 2.9e-20 102.1 80 60.0
BraA03t10836Z Brassica rapa HOM05D002306 ORTHO05D006484 2.9e-20 102.1 80 60.0
BraA03t10838Z Brassica rapa HOM05D002306 ORTHO05D006484 2.9e-20 102.1 80 60.0
BraA03t10841Z Brassica rapa HOM05D002306 ORTHO05D006484 2.9e-20 102.1 80 60.0
Lj1g0020624 Lotus japonicus HOM05D002306 ORTHO05D006484 4.9e-20 101.3 74 68.9
BcaC01g06216 Brassica carinata HOM05D002306 ORTHO05D006484 1.2e-18 96.7 79 59.5
C03p18020 Brassica napus HOM05D002306 ORTHO05D006484 1.2e-18 96.7 79 59.5
BolC3t14207H Brassica oleracea HOM05D002306 ORTHO05D006484 1.2e-18 96.7 79 59.5
Glyma.14G131800 Glycine max HOM05D002306 ORTHO05D006484 1.2e-18 96.7 74 68.9
THA.LOC104803913 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 2.1e-18 95.9 78 62.8
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 6.6e-17 90.9 73 65.8
SMO351G0263 Selaginella moellendorffii HOM05D002306 ORTHO05D006484 2.5e-16 89.0 78 61.5
Pp3c15_21670 Physcomitrium patens HOM05D002306 ORTHO05D006484 3.3e-16 88.6 79 58.2
Dinv35345 Davidia involucrata HOM05D002306 ORTHO05D006484 4.3e-16 88.2 56 75.0
Mapoly0129s0038 Marchantia polymorpha HOM05D002306 ORTHO05D006484 9.6e-16 87.0 78 55.1
CSS0003606 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 1.6e-15 86.3 77 59.7
Os02g0306250 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 3.6e-15 85.1 60 71.7
Os08g0534400 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 3.6e-15 85.1 60 71.7
AagrBONN_evm.TU.Sc2ySwM_228.5884 Anthoceros agrestis HOM05D002306 ORTHO05D006484 6.9e-14 80.9 77 54.5
AagrBONN_evm.TU.Sc2ySwM_228.5887 Anthoceros agrestis HOM05D002306 ORTHO05D006484 6.9e-14 80.9 89 50.6
Zm00001eb152100 Zea mays HOM05D002306 ORTHO05D006484 1.5e-13 79.7 73 57.5
Ciclev10023204m.g Citrus clementina HOM05D002306 ORTHO05D006484 4.9e-12 74.7 57 61.4
Rhsim09G0206300 Rhododendron simsii HOM05D002306 ORTHO05D006484 7.1e-11 70.9 50 68.0
BcaB01g04219 Brassica carinata HOM05D002306 ORTHO05D006484 1.2e-10 70.1 80 51.2
CBR_g50381 Chara braunii HOM05D002306 ORTHO05D006484 1.6e-10 69.7 81 43.2
Glyma.14G130501 Glycine max HOM05D002306 ORTHO05D006484 6.2e-07 57.8 40 67.5


User provided reference genes

Program Settings