Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1127G109 Amborella trichopoda HOM05D002744 ORTHO05D006546 1.1e-221 773.1 410 100.0
Dinv21810 Davidia involucrata HOM05D002744 ORTHO05D006546 2.4e-112 409.8 342 64.9
CSS0032617 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 2.7e-111 406.4 341 63.0
Actinidia00987 Actinidia chinensis HOM05D002744 ORTHO05D006546 2.9e-110 402.9 342 62.6
TAR623G1472 Trochodendron aralioides HOM05D002744 ORTHO05D006546 1.5e-109 400.6 346 63.6
Nn2g11076 Nelumbo nucifera HOM05D002744 ORTHO05D006546 1.2e-108 397.5 343 61.8
MBI16_g02735_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D006546 6.1e-108 395.2 343 63.0
Hma1.2p1_1240F.1_g269620 Hydrangea macrophylla HOM05D002744 ORTHO05D006546 3.4e-106 389.4 342 61.1
vmacro09982 Vaccinium macrocarpon HOM05D002744 ORTHO05D006546 2.2e-105 386.7 405 53.3
GSVIVG01032722001 Vitis vinifera HOM05D002744 ORTHO05D006546 2.2e-105 386.7 344 61.6
MSTRG.5049 Avicennia marina HOM05D002744 ORTHO05D006546 3.7e-105 386.0 346 60.7
Rhsim09G0183300 Rhododendron simsii HOM05D002744 ORTHO05D006546 8.3e-105 384.8 360 58.3
Cc02_g05710 Coffea canephora HOM05D002744 ORTHO05D006546 4.5e-103 379.0 343 60.3
Actinidia07807 Actinidia chinensis HOM05D002744 ORTHO05D006546 2.3e-102 376.7 356 58.1
CiPaw.02G197400 Carya illinoinensis HOM05D002744 ORTHO05D006546 3.8e-102 375.9 342 58.2
CDE04G1223 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 8.6e-102 374.8 342 58.5
QL08p064289 Quercus lobata HOM05D002744 ORTHO05D006546 1.5e-101 374.0 342 58.2
Prupe.2G259600 Prunus persica HOM05D002744 ORTHO05D006546 4.2e-101 372.5 342 59.1
Nitab4.5_0000928g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 9.5e-101 371.3 344 59.6
Potri.008G075700 Populus trichocarpa HOM05D002744 ORTHO05D006546 1.6e-100 370.5 345 60.3
RcHm_v2.0_Chr1g0371491 Rosa chinensis HOM05D002744 ORTHO05D006546 1.4e-99 367.5 342 59.1
PGSC0003DMG400024457 Solanum tuberosum HOM05D002744 ORTHO05D006546 1.8e-99 367.1 343 58.9
Lalb_Chr17g0336941 Lupinus albus HOM05D002744 ORTHO05D006546 3.0e-99 366.3 343 57.7
Manes.07G139400 Manihot esculenta HOM05D002744 ORTHO05D006546 4.0e-99 365.9 348 58.6
Ca_06017_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 6.8e-99 365.2 340 57.1
SGA_v2.0_scaffold5G02937 Striga asiatica HOM05D000129 ORTHO05D000144 6.8e-99 365.2 349 56.4
PSO832G1082 Papaver somniferum HOM05D002744 ORTHO05D006546 1.5e-98 364.0 361 57.6
ClCG00G004700 Citrullus lanatus HOM05D002744 ORTHO05D006546 2.0e-98 363.6 344 58.7
ClCG06G010230 Citrullus lanatus HOM05D002744 ORTHO05D006546 2.0e-98 363.6 344 58.7
PGR044G1552 Punica granatum HOM05D002744 ORTHO05D006546 2.6e-98 363.2 342 57.6
PSO210G7497 Papaver somniferum HOM05D002744 ORTHO05D006546 4.4e-98 362.5 358 57.0
Sc10g0002810 Simmondsia chinensis HOM05D002744 ORTHO05D006546 4.4e-98 362.5 359 56.8
ClCG07G004810 Citrullus lanatus HOM05D002744 ORTHO05D006546 5.7e-98 362.1 343 59.2
FAN10G0428 Fragaria x ananassa HOM05D002744 ORTHO05D006546 9.8e-98 361.3 334 59.0
Thecc.10G007000 Theobroma cacao HOM05D002744 ORTHO05D006546 9.8e-98 361.3 343 58.0
CsaV3_5G010730 Cucumis sativus L. HOM05D002744 ORTHO05D006546 2.9e-97 359.8 343 57.7
FAN01G1994 Fragaria x ananassa HOM05D002744 ORTHO05D006546 2.9e-97 359.8 345 57.7
Glyma.02G230100 Glycine max HOM05D002744 ORTHO05D006546 3.7e-97 359.4 339 57.2
MELO3C020109.2 Cucumis melo HOM05D002744 ORTHO05D006546 4.9e-97 359.0 343 57.7
Duzib106G0255 Durio zibethinus HOM05D002744 ORTHO05D006546 4.9e-97 359.0 343 56.0
Sed0016960 Sechium edule HOM05D002744 ORTHO05D006546 1.1e-96 357.8 356 55.9
Sopen02g017560 Solanum pennellii HOM05D002744 ORTHO05D006546 1.1e-96 357.8 346 58.4
Lsat_1_v5_gn_2_125961 Lactuca sativa HOM05D002744 ORTHO05D006546 1.4e-96 357.5 340 58.5
Aqoxy2G00754 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 1.8e-96 357.1 342 57.6
Lj1C963G12 Lonicera japonica HOM05D002744 ORTHO05D006546 1.8e-96 357.1 348 56.9
Solyc02g068420.4 Solanum lycopersicum HOM05D002744 ORTHO05D006546 1.8e-96 357.1 346 58.4
DCAR_011892 Daucus carota HOM05D002744 ORTHO05D006546 2.4e-96 356.7 342 56.7
HanXRQChr07g0186551 Helianthus annuus HOM05D002744 ORTHO05D006546 2.4e-96 356.7 349 57.9
ECA238G3482 Erigeron canadensis HOM05D002744 ORTHO05D006546 3.2e-96 356.3 343 56.3
Eucgr.J00153 Eucalyptus grandis HOM05D002744 ORTHO05D006546 4.1e-96 355.9 346 58.4
FvH4_7g25510 Fragaria vesca HOM05D002744 ORTHO05D006546 7.0e-96 355.1 342 57.3
Nitab4.5_0000263g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 1.6e-95 354.0 379 54.1
Psat0s1511g0040 Pisum sativum HOM05D002744 ORTHO05D006546 1.6e-95 354.0 339 55.5
PGSC0003DMG400009431 Solanum tuberosum HOM05D002744 ORTHO05D006546 1.6e-95 354.0 346 58.1
MD07G1229400 Malus domestica HOM05D002744 ORTHO05D006546 2.0e-95 353.6 342 55.8
VMungo0647G1938 Vigna mungo HOM05D002744 ORTHO05D006546 2.0e-95 353.6 339 58.7
Ciclev10031901m.g Citrus clementina HOM05D002744 ORTHO05D006546 3.5e-95 352.8 344 56.4
Gorai.011G293300 Gossypium raimondii HOM05D002744 ORTHO05D006546 4.6e-95 352.4 349 57.0
HanXRQChr10g0309081 Helianthus annuus HOM05D002744 ORTHO05D006546 5.9e-95 352.1 345 55.7
Migut.N01809 Erythranthe guttata HOM05D002744 ORTHO05D006546 1.0e-94 351.3 348 56.3
Gohir.A10G240800 Gossypium hirsutum HOM05D002744 ORTHO05D006546 1.3e-94 350.9 347 57.9
Gohir.D10G253000 Gossypium hirsutum HOM05D002744 ORTHO05D006546 1.7e-94 350.5 347 56.8
FAN03G1008 Fragaria x ananassa HOM05D002744 ORTHO05D006546 6.6e-94 348.6 362 54.4
Glyma.14G196400 Glycine max HOM05D002744 ORTHO05D006546 1.5e-93 347.4 340 54.7
Haze_17322 Corylus avellana HOM05D002744 ORTHO05D006546 2.5e-93 346.7 360 55.6
FAN06G0491 Fragaria x ananassa HOM05D002744 ORTHO05D006546 2.5e-93 346.7 392 51.8
Phvul.008G258300 Phaseolus vulgaris HOM05D002744 ORTHO05D006546 9.5e-93 344.7 339 59.3
CSS0017108 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 2.1e-92 343.6 339 56.3
Sabra08G0056300 Salix brachista HOM05D002744 ORTHO05D006546 1.4e-91 340.9 406 50.5
MD01G1161500 Malus domestica HOM05D002744 ORTHO05D006546 2.3e-91 340.1 342 54.4
SEGI_20256 Sequoiadendron giganteum HOM05D002744 ORTHO05D006546 3.1e-91 339.7 352 54.0
CANSAT56G2377 Cannabis sativa HOM05D002744 ORTHO05D006546 4.0e-91 339.3 343 54.5
HPP92_001733 Vanilla planifolia HOM05D002744 ORTHO05D006546 6.8e-91 338.6 341 55.4
Hund13511 Selenicereus undatus HOM05D002744 ORTHO05D006546 2.6e-90 336.7 349 53.6
Os05g0144200 Oryza sativa ssp. japonica HOM05D002744 ORTHO05D006546 7.5e-90 335.1 363 53.7
LjContig00357g0012394 Lotus japonicus HOM05D002744 ORTHO05D006546 2.2e-89 333.6 345 54.8
Peaxi162Scf00284g00133 Petunia axillaris HOM05D002744 ORTHO05D006546 2.9e-89 333.2 343 54.8
Lj1g0011333 Lotus japonicus HOM05D002744 ORTHO05D006546 7.0e-88 328.6 371 51.8
Ah.05g176210 Amaranthus hybridus HOM05D002744 ORTHO05D006546 4.6e-87 325.9 344 52.6
THA.LOC104824347 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 3.9e-86 322.8 339 54.3
THA.LOC104814944 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 1.9e-85 320.5 351 52.1
EL10Ac2g04290 Beta vulgaris HOM05D002744 ORTHO05D006546 7.3e-85 318.5 344 51.5
SalBow1G3835 Salvia bowleyana HOM05D002744 ORTHO05D006546 1.1e-83 314.7 321 59.2
Thhalv10016839m.g Eutrema salsugineum HOM05D002744 ORTHO05D006546 2.3e-83 313.5 345 50.1
CARHR135540 Cardamine hirsuta HOM05D002744 ORTHO05D006546 4.0e-83 312.8 345 51.0
TPR.G14721 Trifolium pratense HOM05D002744 ORTHO05D006546 3.7e-81 306.2 341 52.5
Zm00001eb417890 Zea mays HOM05D002744 ORTHO05D006546 6.4e-81 305.4 362 50.8
COL.COLO4_25825 Corchorus olitorius HOM05D002744 ORTHO05D006546 1.9e-80 303.9 318 52.8
AUR62012335 Chenopodium quinoa HOM05D002744 ORTHO05D006546 2.4e-80 303.5 340 52.4
Carub.0004s2268 Capsella rubella HOM05D002744 ORTHO05D006546 5.4e-80 302.4 367 48.2
SalBow8G2269 Salvia bowleyana HOM05D002744 ORTHO05D006546 1.2e-79 301.2 341 55.7
Aa31LG5G19130 Aethionema arabicum HOM05D002744 ORTHO05D006546 1.6e-79 300.8 342 48.5
AUR62022979 Chenopodium quinoa HOM05D002744 ORTHO05D006546 3.5e-79 299.7 347 50.7
SalBow8G4474 Salvia bowleyana HOM05D002744 ORTHO05D006546 3.5e-79 299.7 344 55.5
Sp4g22770 Schrenkiella parvula HOM05D002744 ORTHO05D006546 4.6e-79 299.3 360 48.3
TWI56G0434 Tripterygium wilfordii HOM05D002744 ORTHO05D006546 6.0e-79 298.9 341 51.3
AL4G38260 Arabidopsis lyrata HOM05D002744 ORTHO05D006546 1.9e-77 293.9 411 43.3
CDE03G0451 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 1.9e-77 293.9 344 50.9
arahy.Tifrunner.gnm1.ann1.G9S3DZ Arachis hypogaea HOM05D002744 ORTHO05D006546 5.6e-77 292.4 349 52.1
arahy.Tifrunner.gnm1.ann1.T368MT Arachis hypogaea HOM05D002744 ORTHO05D006546 1.6e-76 290.8 342 51.2
Medtr5g083780 Medicago truncatula HOM05D002744 ORTHO05D006546 1.1e-75 288.1 344 52.0
BcaB06g29140 Brassica carinata HOM05D002744 ORTHO05D006546 3.1e-75 286.6 361 46.0
BcaC02g12712 Brassica carinata HOM05D002744 ORTHO05D006546 6.8e-75 285.4 366 46.7
BraA05t19165Z Brassica rapa HOM05D002744 ORTHO05D006546 7.6e-74 282.0 362 45.0
A05p01680 Brassica napus HOM05D002744 ORTHO05D006546 1.7e-73 280.8 362 45.0
unitig_27.g25095 Utricularia gibba HOM05D002744 ORTHO05D006546 2.5e-69 266.9 335 47.8
Cpa.g.sc19.99 Carica papaya HOM05D002744 ORTHO05D008989 2.8e-68 263.5 395 48.4
BolC4t21844H Brassica oleracea HOM05D002744 ORTHO05D006546 3.1e-67 260.0 366 43.2
C04p01940 Brassica napus HOM05D002744 ORTHO05D006546 4.0e-67 259.6 360 43.3
C04p68230 Brassica napus HOM05D002744 ORTHO05D006546 6.8e-67 258.8 360 43.6
BolC4t28327H Brassica oleracea HOM05D002744 ORTHO05D006546 6.8e-67 258.8 360 43.6
Mapoly0001s0132 Marchantia polymorpha HOM05D002744 ORTHO05D006546 6.8e-67 258.8 394 39.6
BcaC02g07313 Brassica carinata HOM05D002744 ORTHO05D006546 1.2e-66 258.1 360 43.6
BraA04t18540Z Brassica rapa HOM05D002744 ORTHO05D006546 4.4e-66 256.1 366 44.0
A04p30810 Brassica napus HOM05D002744 ORTHO05D006546 3.8e-65 253.1 366 43.2
AagrBONN_evm.TU.Sc2ySwM_344.2566 Anthoceros agrestis HOM05D002744 ORTHO05D006546 2.5e-61 240.4 352 41.8
CBR_g88544 Chara braunii HOM05D002744 ORTHO05D006546 7.1e-56 222.2 414 37.9
Ca_06977_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 9.3e-56 221.9 187 60.4
Oeu026182.1 Olea europaea HOM05D002744 ORTHO05D006546 7.3e-53 212.2 190 56.8
AT2G40430 Arabidopsis thaliana HOM05D002744 ORTHO05D006546 2.4e-51 207.2 342 40.9
SHI18675 Sapria himalayana HOM05D002744 ORTHO05D006546 3.4e-50 203.4 284 47.5
CAN.G39.17 Capsicum annuum HOM05D002744 ORTHO05D006546 9.9e-50 201.8 195 54.9
MBI16_g06795_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D018022 1.9e-45 187.6 211 54.5
Ca_27928_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 3.8e-41 173.3 260 41.5
Pp3c22_7700 Physcomitrium patens HOM05D002744 ORTHO05D006546 1.3e-38 164.9 372 33.3
Oeu017758.1 Olea europaea HOM05D002744 ORTHO05D006546 3.9e-38 163.3 121 69.4
CAN.G39.16 Capsicum annuum HOM05D002744 ORTHO05D006546 1.9e-37 161.0 124 70.2
Solyc06g050820.3 Solanum lycopersicum HOM05D002744 ORTHO05D006546 2.2e-33 147.5 157 50.3
MCO01G055 Micromonas commoda HOM05D002744 ORTHO05D006546 3.3e-21 107.1 236 34.3
Aqoxy466s002 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 2.5e-16 90.9 117 48.7
HanXRQChr04g0102991 Helianthus annuus HOM05D002744 ORTHO05D006546 3.2e-16 90.5 63 68.3
Cre07.g348250 Chlamydomonas reinhardtii HOM05D002744 ORTHO05D006546 7.9e-15 85.9 284 31.7
AUR62042571 Chenopodium quinoa HOM05D002744 ORTHO05D006546 6.7e-14 82.8 95 45.3
PRCOL_00000452 Prasinoderma coloniale HOM05D002744 ORTHO05D006546 5.7e-13 79.7 411 25.5
arahy.Tifrunner.gnm1.ann1.LJQ8FI Arachis hypogaea HOM05D002744 ORTHO05D006546 1.6e-10 71.6 60 63.3
arahy.Tifrunner.gnm1.ann1.WF3XAB Arachis hypogaea HOM05D002744 ORTHO05D006546 4.5e-10 70.1 61 60.7
Lsat_1_v5_gn_5_82241 Lactuca sativa HOM05D002744 ORTHO05D006546 4.5e-10 70.1 50 64.0
arahy.Tifrunner.gnm1.ann1.XR4RRM Arachis hypogaea HOM05D002744 ORTHO05D006546 1.0e-09 68.9 61 60.7
arahy.Tifrunner.gnm1.ann1.U77MTX Arachis hypogaea HOM05D002744 ORTHO05D006546 8.5e-09 65.9 60 58.3


User provided reference genes

Program Settings