Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1127G077 Amborella trichopoda HOM05D003601 ORTHO05D004896 2.3e-187 658.7 323 100.0
Nn2g12387 Nelumbo nucifera HOM05D003601 ORTHO05D004896 1.1e-125 453.8 321 72.9
CSS0034548 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 1.2e-122 443.7 331 68.9
GSVIVG01027082001 Vitis vinifera HOM05D003601 ORTHO05D004896 1.2e-122 443.7 321 69.8
Rhsim07G0005200 Rhododendron simsii HOM05D003601 ORTHO05D004896 3.4e-122 442.2 327 70.0
TAR374G1433 Trochodendron aralioides HOM05D003601 ORTHO05D004896 3.4e-122 442.2 327 69.7
TAR374G1718 Trochodendron aralioides HOM05D003601 ORTHO05D004896 3.4e-122 442.2 327 69.7
Dinv18735 Davidia involucrata HOM05D003601 ORTHO05D004896 4.5e-122 441.8 324 70.1
QL05p061139 Quercus lobata HOM05D003601 ORTHO05D004896 1.2e-119 433.7 324 67.9
CsaV3_6G034170 Cucumis sativus L. HOM05D003601 ORTHO05D004896 3.6e-119 432.2 328 67.1
CiPaw.01G074700 Carya illinoinensis HOM05D003601 ORTHO05D004896 4.6e-119 431.8 326 67.5
ClCG08G004950 Citrullus lanatus HOM05D003601 ORTHO05D004896 6.1e-119 431.4 328 67.4
Manes.02G115900 Manihot esculenta HOM05D003601 ORTHO05D004896 8.8e-118 427.6 324 67.6
QL05p061428 Quercus lobata HOM05D003601 ORTHO05D004896 8.8e-118 427.6 324 66.4
Sabra14G0071300 Salix brachista HOM05D003601 ORTHO05D004896 8.8e-118 427.6 320 68.4
Sed0004785 Sechium edule HOM05D003601 ORTHO05D004896 1.1e-117 427.2 328 66.2
CANSAT11G0274 Cannabis sativa HOM05D003601 ORTHO05D004896 4.4e-117 425.2 328 67.1
QL01p016478 Quercus lobata HOM05D003601 ORTHO05D004896 4.4e-117 425.2 324 67.0
Potri.014G097300 Populus trichocarpa HOM05D003601 ORTHO05D004896 7.4e-117 424.5 327 67.0
vmacro23173 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 9.7e-117 424.1 353 64.3
BcaB03g13574 Brassica carinata HOM05D003601 ORTHO05D004896 1.3e-116 423.7 318 67.3
Carub.0001s0088 Capsella rubella HOM05D003601 ORTHO05D004896 2.2e-116 422.9 330 64.8
Manes.07G071780 Manihot esculenta HOM05D003601 ORTHO05D004896 3.7e-116 422.2 328 67.4
Eucgr.D01238 Eucalyptus grandis HOM05D003601 ORTHO05D004896 4.8e-116 421.8 324 65.4
Glyma.03G025400 Glycine max HOM05D003601 ORTHO05D004896 2.4e-115 419.5 326 67.2
arahy.Tifrunner.gnm1.ann1.EN9PMD Arachis hypogaea HOM05D003601 ORTHO05D004896 3.1e-115 419.1 327 67.0
TWI59G1066 Tripterygium wilfordii HOM05D003601 ORTHO05D004896 4.1e-115 418.7 327 66.7
Atru.chr5.650 Acer truncatum HOM05D003601 ORTHO05D004896 5.3e-115 418.3 324 64.5
Glyma.05G210600 Glycine max HOM05D003601 ORTHO05D004896 9.1e-115 417.5 326 66.6
MELO3C010640.2 Cucumis melo HOM05D003601 ORTHO05D004896 1.2e-114 417.2 356 62.1
Cpa.g.sc273.4 Carica papaya HOM05D003601 ORTHO05D004896 1.5e-114 416.8 323 63.8
Cc05_g04050 Coffea canephora HOM05D003601 ORTHO05D004896 1.5e-114 416.8 327 65.4
Ca_09198_v3 Cicer arietinum L. HOM05D003601 ORTHO05D004896 2.6e-114 416.0 327 66.1
ECA236G1416 Erigeron canadensis HOM05D003601 ORTHO05D004896 2.6e-114 416.0 315 68.3
PSO541G5643 Papaver somniferum HOM05D003601 ORTHO05D004896 2.6e-114 416.0 331 66.2
VMungo0331G0886 Vigna mungo HOM05D003601 ORTHO05D004896 3.4e-114 415.6 327 66.4
Haze_15640 Corylus avellana HOM05D003601 ORTHO05D004896 4.5e-114 415.2 324 65.7
BraA10t42337Z Brassica rapa HOM05D003601 ORTHO05D004896 5.9e-114 414.8 319 66.1
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 5.9e-114 414.8 327 66.4
Phvul.010G084000 Phaseolus vulgaris HOM05D003601 ORTHO05D004896 7.7e-114 414.5 327 66.7
EL10Ac9g21625 Beta vulgaris HOM05D003601 ORTHO05D004896 1.3e-113 413.7 325 63.7
Duzib151G0301 Durio zibethinus HOM05D003601 ORTHO05D004896 1.3e-113 413.7 339 64.3
Thecc.04G197100 Theobroma cacao HOM05D003601 ORTHO05D004896 1.7e-113 413.3 315 66.3
PSO675G3308 Papaver somniferum HOM05D003601 ORTHO05D004896 2.2e-113 412.9 316 68.0
BolC5t28850H Brassica oleracea HOM05D003601 ORTHO05D004896 2.9e-113 412.5 318 65.7
Ciclev10021165m.g Citrus clementina HOM05D003601 ORTHO05D004896 2.9e-113 412.5 319 66.8
BcaB03g13575 Brassica carinata HOM05D003601 ORTHO05D004896 5.0e-113 411.8 325 64.3
C05p00620 Brassica napus HOM05D003601 ORTHO05D004896 8.5e-113 411.0 315 66.0
A10p00590 Brassica napus HOM05D003601 ORTHO05D004896 1.1e-112 410.6 318 65.4
Thhalv10009432m.g Eutrema salsugineum HOM05D003601 ORTHO05D004896 1.1e-112 410.6 314 65.6
PGSC0003DMG400013655 Solanum tuberosum HOM05D003601 ORTHO05D004896 1.9e-112 409.8 321 65.1
THA.LOC104812142 Tarenaya hassleriana HOM05D003601 ORTHO05D004896 2.5e-112 409.5 314 65.9
AT1G01350 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 5.5e-112 408.3 342 61.7
AL1G11100 Arabidopsis lyrata HOM05D003601 ORTHO05D004896 7.2e-112 407.9 342 61.4
Gohir.D02G113600 Gossypium hirsutum HOM05D003601 ORTHO05D004896 1.6e-111 406.8 320 64.1
MD01G1079100 Malus domestica HOM05D003601 ORTHO05D004896 1.6e-111 406.8 324 64.5
Gohir.A03G095300 Gossypium hirsutum HOM05D003601 ORTHO05D004896 2.1e-111 406.4 320 63.8
Sp1g00940 Schrenkiella parvula HOM05D003601 ORTHO05D004896 2.1e-111 406.4 317 65.0
COL.COLO4_20208 Corchorus olitorius HOM05D003601 ORTHO05D004896 2.7e-111 406.0 320 64.1
Aa31LG11G12300 Aethionema arabicum HOM05D003601 ORTHO05D004896 6.1e-111 404.8 317 65.0
Prupe.6G288300 Prunus persica HOM05D003601 ORTHO05D004896 1.4e-110 403.7 325 64.3
unitig_0.g331 Utricularia gibba HOM05D003601 ORTHO05D004896 1.8e-110 403.3 318 64.5
AT5G06420 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 3.9e-110 402.1 324 63.0
RcHm_v2.0_Chr3g0492261 Rosa chinensis HOM05D003601 ORTHO05D004896 3.9e-110 402.1 324 63.3
SHI13229 Sapria himalayana HOM05D003601 ORTHO05D004896 3.9e-110 402.1 311 66.6
Hund16704 Selenicereus undatus HOM05D003601 ORTHO05D004896 3.9e-110 402.1 324 64.5
Peaxi162Scf01343g00152 Petunia axillaris HOM05D003601 ORTHO05D004896 5.2e-110 401.7 331 62.8
FAN02G3979 Fragaria x ananassa HOM05D004408 ORTHO05D005486 6.7e-110 401.4 324 63.9
Dinv32573 Davidia involucrata HOM05D003601 ORTHO05D004896 8.8e-110 401.0 300 69.0
HPP92_024723 Vanilla planifolia HOM05D003601 ORTHO05D004896 9.7e-109 397.5 316 63.9
Lj1g0023495 Lotus japonicus HOM05D003601 ORTHO05D004896 1.7e-108 396.7 316 65.5
Gorai.005G129300 Gossypium raimondii HOM05D003601 ORTHO05D004896 2.8e-108 396.0 332 61.4
Lalb_Chr04g0261591 Lupinus albus HOM05D003601 ORTHO05D004896 6.3e-108 394.8 333 61.9
PGR042G1585 Punica granatum HOM05D003601 ORTHO05D004896 6.3e-108 394.8 319 63.0
CARHR001090 Cardamine hirsuta HOM05D003601 ORTHO05D004896 1.1e-107 394.0 314 64.6
HanXRQChr04g0120251 Helianthus annuus HOM05D003601 ORTHO05D004896 1.1e-107 394.0 332 63.3
SEGI_12555 Sequoiadendron giganteum HOM05D003601 ORTHO05D004896 1.8e-107 393.3 323 63.2
MD04G1169800 Malus domestica HOM05D003601 ORTHO05D004896 3.1e-107 392.5 325 62.8
Aqoxy3G00289 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 1.2e-106 390.6 320 62.5
HanXRQChr06g0170651 Helianthus annuus HOM05D003601 ORTHO05D004896 1.6e-106 390.2 320 62.8
FvH4_6g10411 Fragaria vesca HOM05D003601 ORTHO05D004896 2.0e-106 389.8 324 63.0
FAN14G0738 Fragaria x ananassa HOM05D003601 ORTHO05D004896 2.6e-106 389.4 324 63.0
Sopen02g026770 Solanum pennellii HOM05D003601 ORTHO05D004896 2.6e-106 389.4 321 62.6
arahy.Tifrunner.gnm1.ann1.JS26LE Arachis hypogaea HOM05D003601 ORTHO05D004896 1.7e-105 386.7 327 64.2
FAN05G2697 Fragaria x ananassa HOM05D004408 ORTHO05D005486 2.2e-105 386.3 324 62.3
FAN09G0115 Fragaria x ananassa HOM05D004408 ORTHO05D005486 3.8e-105 385.6 322 62.4
Lj8C4T0 Lonicera japonica HOM05D003601 ORTHO05D004896 5.0e-105 385.2 298 67.1
AUR62016842 Chenopodium quinoa HOM05D003601 ORTHO05D004896 3.2e-104 382.5 317 62.5
Sc23g0002160 Simmondsia chinensis HOM05D003601 ORTHO05D004896 9.4e-104 380.9 291 67.0
CSS0019404 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 2.1e-103 379.8 250 73.2
Mapoly0066s0113 Marchantia polymorpha HOM05D003601 ORTHO05D004896 1.0e-102 377.5 321 60.4
SGA_v2.0_scaffold5G03009 Striga asiatica HOM05D003601 ORTHO05D004896 6.7e-102 374.8 325 61.8
Cfa003813 Carpinus fangiana HOM05D003601 ORTHO05D004896 4.4e-101 372.1 324 60.2
TPR.G20293 Trifolium pratense HOM05D003601 ORTHO05D004896 4.4e-101 372.1 318 61.3
Ah.01g018710 Amaranthus hybridus HOM05D003601 ORTHO05D004896 1.3e-100 370.5 294 65.6
MSTRG.17333 Avicennia marina HOM05D003601 ORTHO05D004896 3.7e-100 369.0 316 62.0
Lsat_1_v5_gn_7_1360 Lactuca sativa HOM05D003601 ORTHO05D004896 3.7e-100 369.0 325 60.0
LjContig00564g0001173 Lotus japonicus HOM05D003601 ORTHO05D004896 3.7e-100 369.0 325 60.0
DCAR_004784 Daucus carota HOM05D003601 ORTHO05D004896 3.5e-98 362.5 297 63.6
Glyma.08G286000 Glycine max HOM05D003601 ORTHO05D004896 4.5e-98 362.1 304 62.5
Pp3c8_16180 Physcomitrium patens HOM05D003601 ORTHO05D004896 4.5e-98 362.1 313 58.8
Peaxi162Scf00130g01110 Petunia axillaris HOM05D003601 ORTHO05D004896 1.3e-97 360.5 295 62.0
QL05p063445 Quercus lobata HOM05D003601 ORTHO05D004896 5.5e-96 355.1 295 63.7
Lj8C0T4 Lonicera japonica HOM05D003601 ORTHO05D004896 6.1e-95 351.7 298 63.4
Peaxi162Scf00036g00412 Petunia axillaris HOM05D003601 ORTHO05D004896 8.0e-95 351.3 312 59.9
Migut.B01852 Erythranthe guttata HOM05D003601 ORTHO05D004896 3.1e-91 339.3 318 56.3
Zm00001eb204190 Zea mays HOM05D003601 ORTHO05D004896 4.1e-91 339.0 342 56.7
Nitab4.5_0010133g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 5.4e-91 338.6 245 67.3
AagrBONN_evm.TU.Sc2ySwM_344.3813 Anthoceros agrestis HOM05D003601 ORTHO05D004896 3.8e-89 332.4 300 57.3
MD07G1148000 Malus domestica HOM05D003601 ORTHO05D004896 4.2e-88 328.9 220 71.8
Nitab4.5_0001815g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 4.0e-86 322.4 287 61.7
SMO351G0471 Selaginella moellendorffii HOM05D003601 ORTHO05D004896 5.2e-86 322.0 327 52.9
Nitab4.5_0000614g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 5.7e-85 318.5 287 60.6
Os02g0301000 Oryza sativa ssp. japonica HOM05D003601 ORTHO05D004896 5.7e-85 318.5 324 55.2
Duzib212G0966 Durio zibethinus HOM05D003601 ORTHO05D004896 7.5e-85 318.2 300 57.0
Peaxi162Scf00119g01222 Petunia axillaris HOM05D003601 ORTHO05D004896 4.1e-83 312.4 221 67.4
Hma1.2p1_1566F.1_g291000 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 3.3e-80 302.8 265 60.0
Hma1.2p1_0180F.1_g079650 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 4.3e-80 302.4 294 56.1
CAN.G809.19 Capsicum annuum HOM05D003601 ORTHO05D004896 7.3e-80 301.6 272 61.0
Sed0000777 Sechium edule HOM05D003601 ORTHO05D004896 3.6e-79 299.3 240 62.9
Nitab4.5_0005819g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 1.3e-76 290.8 270 59.3
EL10Ac5g12528 Beta vulgaris HOM05D003601 ORTHO05D004896 4.1e-75 285.8 233 63.9
ECA247G1228 Erigeron canadensis HOM05D003601 ORTHO05D004896 1.3e-68 264.2 229 59.8
Actinidia10120 Actinidia chinensis HOM05D003601 ORTHO05D004896 4.9e-68 262.3 237 60.3
DCAR_004777 Daucus carota HOM05D003601 ORTHO05D004896 8.3e-68 261.5 297 51.5
MCO16G487 Micromonas commoda HOM05D003601 ORTHO05D004896 4.1e-67 259.2 229 55.5
CBR_g49220 Chara braunii HOM05D003601 ORTHO05D004896 5.4e-67 258.8 173 68.8
Cre06.g254650 Chlamydomonas reinhardtii HOM05D003601 ORTHO05D004896 1.1e-64 251.1 256 50.4
TAR375G0212 Trochodendron aralioides HOM05D003601 ORTHO05D004896 3.3e-64 249.6 159 73.6
Rhsim01G0171500 Rhododendron simsii HOM05D003601 ORTHO05D004896 3.1e-62 243.0 217 58.5
Eucgr.L01590 Eucalyptus grandis HOM05D003601 ORTHO05D004896 6.4e-60 235.3 199 63.3
Thecc.07G081100 Theobroma cacao HOM05D003601 ORTHO05D004896 1.2e-58 231.1 221 57.5
CDE08G0937 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 5.6e-56 222.2 225 56.0
COL.COLO4_33292 Corchorus olitorius HOM05D002650 ORTHO05D002924 9.5e-56 221.5 283 46.6
SGA_v2.0_scaffold25G10756 Striga asiatica HOM05D003601 ORTHO05D004896 2.1e-55 220.3 187 65.8
vmacro10191 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 4.7e-55 219.2 226 54.9
vmacro20852 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 4.7e-55 219.2 216 55.6
TPR.G29640 Trifolium pratense HOM05D003601 ORTHO05D004896 1.5e-53 214.2 224 54.0
CARHR001100 Cardamine hirsuta HOM05D003601 ORTHO05D004896 2.4e-51 206.8 140 70.7
QL05p061570 Quercus lobata HOM05D003601 ORTHO05D004896 4.1e-51 206.1 215 54.9
PRCOL_00000030 Prasinoderma coloniale HOM05D003601 ORTHO05D004896 6.6e-49 198.7 220 47.3
TPR.G8712 Trifolium pratense HOM05D003601 ORTHO05D004896 1.1e-48 198.0 185 62.2
AagrBONN_evm.TU.Sc2ySwM_344.929 Anthoceros agrestis HOM05D003601 ORTHO05D004896 1.4e-46 191.0 134 68.7
PSO824G0013 Papaver somniferum HOM05D003601 ORTHO05D004896 1.2e-45 188.0 240 47.9
CBR_g26342 Chara braunii HOM05D003601 ORTHO05D004896 7.1e-43 178.7 369 35.5
Haze_27631 Corylus avellana HOM05D003601 ORTHO05D004896 3.5e-42 176.4 147 55.1
CDE08G1615 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 1.5e-40 171.0 116 71.6
Cfa021608 Carpinus fangiana HOM05D003601 ORTHO05D004896 4.5e-37 159.5 241 35.7
Sc08g0001920 Simmondsia chinensis HOM05D003601 ORTHO05D004896 4.9e-36 156.0 112 62.5
Prupe.7G095500 Prunus persica HOM05D003601 ORTHO05D004896 7.9e-34 148.7 160 46.9
Carub.0008s2038 Capsella rubella HOM05D003601 ORTHO05D004896 1.0e-33 148.3 143 55.2
Medtr7g108868 Medicago truncatula HOM05D003601 ORTHO05D004896 3.3e-32 143.3 177 44.6
Medtr8g058593 Medicago truncatula HOM05D003601 ORTHO05D004896 3.3e-32 143.3 177 44.6
Medtr8g058607 Medicago truncatula HOM05D003601 ORTHO05D004896 7.4e-32 142.1 177 44.6
Psat3g020760 Pisum sativum HOM05D003601 ORTHO05D004896 1.7e-28 131.0 279 39.1
Duzib212G0206 Durio zibethinus HOM05D003601 ORTHO05D004896 3.2e-27 126.7 185 45.9
Aqoxy5G01484 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 5.5e-27 125.9 210 38.6
QL04p075806 Quercus lobata HOM05D003601 ORTHO05D004896 1.5e-24 117.9 123 56.1
QL04p075812 Quercus lobata HOM05D003601 ORTHO05D004896 8.2e-23 112.1 82 64.6
BraA09t42245Z Brassica rapa HOM05D000288 ORTHO05D000173 1.8e-22 110.9 83 63.9
Sc08g0001910 Simmondsia chinensis HOM05D003601 ORTHO05D004896 5.3e-22 109.4 97 53.6
Actinidia26616 Actinidia chinensis HOM05D003601 ORTHO05D004896 6.9e-22 109.0 172 47.7
Thhalv10029283m.g Eutrema salsugineum HOM05D003601 ORTHO05D015895 2.9e-20 103.6 66 63.6
C02p38360 Brassica napus HOM05D003601 ORTHO05D015895 4.9e-20 102.8 69 60.9
RcHm_v2.0_Chr3g0461311 Rosa chinensis HOM05D003601 ORTHO05D004896 7.1e-19 99.0 119 46.2
AT4G01023 Arabidopsis thaliana HOM05D003601 ORTHO05D015895 1.2e-18 98.2 70 55.7
AL6G52380 Arabidopsis lyrata HOM05D003601 ORTHO05D015895 4.6e-18 96.3 138 39.9
A02p24300 Brassica napus HOM05D003601 ORTHO05D015895 7.9e-18 95.5 68 58.8
BraA02t07420Z Brassica rapa HOM05D003601 ORTHO05D015895 7.9e-18 95.5 68 58.8
Carub.0006s3606 Capsella rubella HOM05D003601 ORTHO05D015895 3.9e-17 93.2 75 52.0
Sp6g01130 Schrenkiella parvula HOM05D003601 ORTHO05D015895 5.1e-17 92.8 63 61.9
BcaC03g16072 Brassica carinata HOM05D003601 ORTHO05D015895 1.5e-16 91.3 73 54.8
BolC2t09850H Brassica oleracea HOM05D003601 ORTHO05D015895 1.5e-16 91.3 73 54.8
A01p41390 Brassica napus HOM05D003601 ORTHO05D023606 1.3e-15 88.2 67 55.2
BNapus_Darmor_BZH_scaffold_78p00320 Brassica napus HOM05D003601 ORTHO05D023606 1.3e-15 88.2 67 55.2
CARHR249320 Cardamine hirsuta HOM05D003601 ORTHO05D015895 2.2e-15 87.4 100 44.0
FvH4_5g30073 Fragaria vesca HOM05D003601 ORTHO05D004896 4.1e-14 83.2 109 39.4
EL10Ac9g21063 Beta vulgaris HOM05D003601 ORTHO05D004896 1.5e-13 81.3 102 50.0
CBR_g49218 Chara braunii HOM05D003601 ORTHO05D004896 1.5e-13 81.3 176 35.8
Actinidia20220 Actinidia chinensis HOM05D003601 ORTHO05D004896 1.1e-11 75.1 81 48.1
TAR375G0774 Trochodendron aralioides HOM05D003601 ORTHO05D004896 3.2e-11 73.6 69 56.5
TPR.G13782 Trifolium pratense HOM05D003601 ORTHO05D037558 2.7e-10 70.5 91 49.5
TPR.G20298 Trifolium pratense HOM05D003601 ORTHO05D037558 1.0e-09 68.6 93 49.5
A02p43170 Brassica napus HOM05D003601 ORTHO05D013806 2.2e-07 60.8 114 34.2
C01p04070 Brassica napus HOM05D003601 ORTHO05D013806 3.1e-06 57.0 71 43.7


User provided reference genes

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