Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1126G044 Amborella trichopoda HOM05D004452 ORTHO05D005358 0.0e+00 1614.7 817 100.0
MBI06_g02568_MAGBIO Magnolia biondii HOM05D004452 ORTHO05D005358 1.6e-288 996.1 809 65.5
TAR381G1434 Trochodendron aralioides HOM05D004452 ORTHO05D005358 1.9e-281 972.6 807 63.8
Nn5g30286 Nelumbo nucifera HOM05D004452 ORTHO05D005358 1.6e-272 943.0 813 61.7
GSVIVG01009484001 Vitis vinifera HOM05D004452 ORTHO05D005358 4.3e-270 934.9 792 62.0
Rhsim06G0050800 Rhododendron simsii HOM05D004452 ORTHO05D005358 2.7e-264 915.6 820 59.1
Ciclev10000290m.g Citrus clementina HOM05D004452 ORTHO05D005358 2.5e-262 909.1 804 59.3
Manes.18G038000 Manihot esculenta HOM05D004452 ORTHO05D005358 1.6e-261 906.4 807 60.5
Thecc.08G005800 Theobroma cacao HOM05D004452 ORTHO05D005358 3.6e-261 905.2 806 59.2
Aqoxy5G01224 Aquilegia oxysepala HOM05D004452 ORTHO05D005358 5.2e-260 901.4 813 59.0
CSS0026728 Camellia sinensis var. sinensis HOM05D004452 ORTHO05D005358 8.9e-260 900.6 835 58.3
vmacro21515 Vaccinium macrocarpon HOM05D004452 ORTHO05D005358 5.8e-259 897.9 834 57.8
Duzib093G1704 Durio zibethinus HOM05D004452 ORTHO05D005358 1.3e-258 896.7 823 58.2
Actinidia23285 Actinidia chinensis HOM05D004452 ORTHO05D005358 2.9e-258 895.6 830 57.3
Cfa018088 Carpinus fangiana HOM05D004452 ORTHO05D005358 8.4e-258 894.0 810 59.3
Lj4A59T44 Lonicera japonica HOM05D004452 ORTHO05D005358 7.1e-257 891.0 802 59.1
RcHm_v2.0_Chr6g0308041 Rosa chinensis HOM05D004452 ORTHO05D005358 2.1e-256 889.4 822 59.6
QL02p004676 Quercus lobata HOM05D004452 ORTHO05D005358 6.0e-256 887.9 809 58.5
Gohir.D05G206300 Gossypium hirsutum HOM05D004452 ORTHO05D005358 2.3e-255 885.9 778 59.8
Atru.chr13.704 Acer truncatum HOM05D004452 ORTHO05D005358 5.1e-255 884.8 805 58.3
MD15G1081700 Malus domestica HOM05D004452 ORTHO05D005358 5.1e-255 884.8 807 57.9
CiPaw.15G055600 Carya illinoinensis HOM05D004452 ORTHO05D005358 8.7e-255 884.0 806 58.1
Prupe.1G434400 Prunus persica HOM05D004452 ORTHO05D005358 1.5e-254 883.2 824 58.4
COL.COLO4_26520 Corchorus olitorius HOM05D004452 ORTHO05D005358 1.9e-254 882.9 809 58.3
PSO170G2588 Papaver somniferum HOM05D004452 ORTHO05D005358 2.8e-253 879.0 806 58.7
Dinv39307 Davidia involucrata HOM05D004452 ORTHO05D005358 6.2e-253 877.9 811 58.1
Gorai.009G212700 Gossypium raimondii HOM05D004452 ORTHO05D005358 8.1e-253 877.5 778 59.3
PSO210G0441 Papaver somniferum HOM05D004452 ORTHO05D005358 2.9e-250 869.0 806 58.3
Sabra14G0019200 Salix brachista HOM05D004452 ORTHO05D005358 3.8e-250 868.6 824 57.5
TWI36G0852 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 4.9e-250 868.2 807 57.7
Oeu043579.4 Olea europaea HOM05D004452 ORTHO05D005358 1.1e-249 867.1 818 56.8
Potri.014G028100 Populus trichocarpa HOM05D004452 ORTHO05D005358 4.2e-249 865.1 824 57.6
Cc10_g04060 Coffea canephora HOM05D004452 ORTHO05D005358 5.4e-249 864.8 818 56.2
FvH4_2g34320 Fragaria vesca HOM05D004452 ORTHO05D005358 3.5e-248 862.1 822 58.3
FAN15G1326 Fragaria x ananassa HOM05D004452 ORTHO05D005358 1.0e-247 860.5 822 58.2
FAN20G1510 Fragaria x ananassa HOM05D004452 ORTHO05D005358 1.3e-247 860.1 821 58.6
FAN27G2914 Fragaria x ananassa HOM05D004452 ORTHO05D005358 2.3e-247 859.4 822 58.4
Sc15g0006090 Simmondsia chinensis HOM05D004452 ORTHO05D005358 1.6e-245 853.2 810 57.4
TWI56G0235 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 2.1e-245 852.8 807 57.1
CANSAT11G1000 Cannabis sativa HOM05D004452 ORTHO05D005358 3.4e-243 845.5 827 56.5
FAN24G0195 Fragaria x ananassa HOM05D004452 ORTHO05D005358 3.4e-243 845.5 871 55.2
Nitab4.5_0000287g0200 Nicotiana tabacum HOM05D004452 ORTHO05D005358 4.5e-243 845.1 825 56.1
ClCG05G019920 Citrullus lanatus HOM05D004452 ORTHO05D005358 5.8e-243 844.7 802 56.0
CsaV3_4G034360 Cucumis sativus L. HOM05D004452 ORTHO05D005358 5.8e-243 844.7 803 55.9
CAN.G1030.10 Capsicum annuum HOM05D004452 ORTHO05D005358 1.3e-242 843.6 825 55.5
PGSC0003DMG400007967 Solanum tuberosum HOM05D004452 ORTHO05D005358 1.3e-242 843.6 807 56.6
Nitab4.5_0002760g0030 Nicotiana tabacum HOM05D004452 ORTHO05D005358 1.7e-242 843.2 826 56.1
MELO3C016756.2 Cucumis melo HOM05D004452 ORTHO05D005358 6.4e-242 841.3 802 55.5
Lsat_1_v5_gn_1_21181 Lactuca sativa HOM05D004452 ORTHO05D005358 6.0e-240 834.7 815 55.6
Cpa.g.sc49.27 Carica papaya HOM05D004452 ORTHO05D005358 1.3e-239 833.6 824 55.5
Lj1g0004160 Lotus japonicus HOM05D004452 ORTHO05D005358 1.3e-239 833.6 798 56.6
Hma1.2p1_2046F.1_g312410 Hydrangea macrophylla HOM05D004452 ORTHO05D005358 5.1e-239 831.6 844 55.7
THA.LOC104822853 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 1.1e-238 830.5 805 56.4
Sed0009272 Sechium edule HOM05D004452 ORTHO05D005358 1.3e-237 827.0 807 55.5
Lalb_Chr11g0062611 Lupinus albus HOM05D004452 ORTHO05D005358 3.7e-237 825.5 825 55.0
DCAR_019448 Daucus carota HOM05D004452 ORTHO05D005358 5.3e-236 821.6 803 55.2
Peaxi162Scf00252g00221 Petunia axillaris HOM05D004452 ORTHO05D005358 9.0e-236 820.8 805 55.2
Solyc04g078830.3 Solanum lycopersicum HOM05D004452 ORTHO05D005358 1.5e-235 820.1 825 54.9
Glyma.06G040600 Glycine max HOM05D004452 ORTHO05D005358 3.4e-235 818.9 797 56.3
Ca_15944_v3 Cicer arietinum L. HOM05D004452 ORTHO05D005358 1.3e-234 817.0 798 54.8
Migut.N02714 Erythranthe guttata HOM05D004452 ORTHO05D005358 4.9e-234 815.1 821 54.9
PGR031G1897 Punica granatum HOM05D004452 ORTHO05D005358 6.4e-234 814.7 806 55.5
Carub.0008s0587 Capsella rubella HOM05D004452 ORTHO05D005358 1.9e-233 813.1 803 54.9
Glyma.04G039400 Glycine max HOM05D004452 ORTHO05D005358 1.2e-232 810.4 805 55.4
Medtr3g101790 Medicago truncatula HOM05D004452 ORTHO05D005358 1.2e-232 810.4 806 55.2
TPR.G24198 Trifolium pratense HOM05D004452 ORTHO05D005358 6.7e-231 804.7 804 54.4
CDE08G0013 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 8.7e-231 804.3 801 55.7
Eucgr.F02336 Eucalyptus grandis HOM05D004452 ORTHO05D005358 1.5e-230 803.5 795 55.1
HanXRQChr02g0039511 Helianthus annuus HOM05D004452 ORTHO05D005358 1.3e-229 800.4 811 54.6
arahy.Tifrunner.gnm1.ann1.UAD7VL Arachis hypogaea HOM05D004452 ORTHO05D005358 3.1e-228 795.8 799 55.2
Psat5g042600 Pisum sativum HOM05D004452 ORTHO05D005358 4.0e-228 795.4 781 55.2
MSTRG.24335 Avicennia marina HOM05D004452 ORTHO05D005358 3.4e-227 792.3 820 53.5
arahy.Tifrunner.gnm1.ann1.Y5ZCTQ Arachis hypogaea HOM05D004452 ORTHO05D005358 5.8e-227 791.6 799 54.9
BcaC06g31738 Brassica carinata HOM05D004452 ORTHO05D005358 1.3e-226 790.4 805 53.4
Phvul.009G065600 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 1.3e-226 790.4 800 54.5
AL8G17930 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 6.5e-226 788.1 805 53.3
VMungo1309G1308 Vigna mungo HOM05D004452 ORTHO05D005358 6.5e-226 788.1 800 54.1
AT5G42920 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 1.4e-225 786.9 805 53.4
CARHR181170 Cardamine hirsuta HOM05D004452 ORTHO05D005358 1.2e-224 783.9 804 53.5
AUR62041892 Chenopodium quinoa HOM05D004452 ORTHO05D005358 1.2e-224 783.9 806 54.1
Gohir.A05G203100 Gossypium hirsutum HOM05D004452 ORTHO05D005358 2.1e-224 783.1 717 59.4
Aa31LG9G12980 Aethionema arabicum HOM05D004452 ORTHO05D005358 7.9e-224 781.2 812 52.6
Sp2g07660 Schrenkiella parvula HOM05D004452 ORTHO05D005358 3.0e-223 779.2 805 53.3
ECA247G0253 Erigeron canadensis HOM05D004452 ORTHO05D005358 5.1e-223 778.5 832 52.9
A06p48170 Brassica napus HOM05D004452 ORTHO05D005358 8.7e-223 777.7 807 53.3
BraA06t27686Z Brassica rapa HOM05D004452 ORTHO05D005358 4.3e-222 775.4 807 53.4
Thhalv10003147m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 9.7e-222 774.2 810 53.0
BcaC02g10792 Brassica carinata HOM05D004452 ORTHO05D005358 1.1e-220 770.8 808 53.6
C04p25060 Brassica napus HOM05D004452 ORTHO05D005358 1.1e-220 770.8 808 53.6
BolC4t24007H Brassica oleracea HOM05D004452 ORTHO05D005358 1.1e-220 770.8 808 53.6
SGA_v2.0_scaffold28G11777 Striga asiatica HOM05D004452 ORTHO05D005358 3.1e-220 769.2 801 53.4
Hund23866 Selenicereus undatus HOM05D004452 ORTHO05D005358 6.5e-218 761.5 822 50.9
EL10Ac1g01836 Beta vulgaris HOM05D004452 ORTHO05D005358 2.6e-211 739.6 802 51.6
SHI08268 Sapria himalayana HOM05D004452 ORTHO05D005358 5.7e-206 721.8 808 50.9
Zm00001eb255990 Zea mays HOM05D004452 ORTHO05D005358 4.4e-198 695.7 806 50.9
Dinv35952 Davidia involucrata HOM05D004452 ORTHO05D005358 2.7e-192 676.4 652 58.3
CDE04G2017 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 1.1e-185 654.4 635 56.7
SalBow8G3632 Salvia bowleyana HOM05D004452 ORTHO05D005358 1.6e-176 624.0 664 52.0
SalBow8G0374 Salvia bowleyana HOM05D004452 ORTHO05D005358 2.1e-176 623.6 664 52.0
Mapoly0012s0112 Marchantia polymorpha HOM05D004452 ORTHO05D005358 3.0e-175 619.8 851 45.8
CiPaw.16G042900 Carya illinoinensis HOM05D004452 ORTHO05D005358 1.5e-158 564.3 475 62.9
Oeu023860.1 Olea europaea HOM05D004452 ORTHO05D005358 2.2e-149 533.9 468 60.0
HPP92_016717 Vanilla planifolia HOM05D004452 ORTHO05D005358 2.4e-148 530.4 810 42.0
CANSAT11G0118 Cannabis sativa HOM05D004452 ORTHO05D005358 2.1e-147 527.3 454 61.0
Sopen04g032430 Solanum pennellii HOM05D004452 ORTHO05D005358 3.0e-146 523.5 580 49.1
Sc02g0007190 Simmondsia chinensis HOM05D004452 ORTHO05D005358 4.3e-145 519.6 464 59.9
Lalb_Chr08g0245391 Lupinus albus HOM05D004452 ORTHO05D005358 9.6e-145 518.5 468 59.4
Os02g0767100 Oryza sativa ssp. japonica HOM05D004452 ORTHO05D005358 9.9e-142 508.4 462 59.5
Phvul.001G022500 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 1.9e-140 504.2 465 57.0
Glyma.17G241800 Glycine max HOM05D004452 ORTHO05D005358 4.2e-140 503.1 467 57.0
Glyma.14G083300 Glycine max HOM05D004452 ORTHO05D005358 5.4e-140 502.7 467 58.5
SMO356G0003 Selaginella moellendorffii HOM05D004452 ORTHO05D005358 1.3e-138 498.0 710 44.4
MSTRG.25087 Avicennia marina HOM05D004452 ORTHO05D005358 8.7e-138 495.4 420 61.2
arahy.Tifrunner.gnm1.ann1.IXK305 Arachis hypogaea HOM05D004452 ORTHO05D005358 6.2e-136 489.2 459 57.1
arahy.Tifrunner.gnm1.ann1.VB8FSW Arachis hypogaea HOM05D004452 ORTHO05D005358 6.2e-136 489.2 459 57.1
THA.LOC104812571 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 1.4e-135 488.0 462 58.0
VMungo0647G1811 Vigna mungo HOM05D004452 ORTHO05D005358 1.2e-134 485.0 469 54.8
AL1G52910 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 5.1e-130 469.5 461 56.0
Thhalv10011479m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 1.9e-129 467.6 458 57.0
AagrBONN_evm.TU.Sc2ySwM_228.4151 Anthoceros agrestis HOM05D004452 ORTHO05D005358 2.5e-129 467.2 721 43.1
AUR62038817 Chenopodium quinoa HOM05D004452 ORTHO05D005358 4.8e-128 463.0 528 48.7
AT1G45233 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 5.3e-127 459.5 473 54.3
Sp1g34090 Schrenkiella parvula HOM05D004452 ORTHO05D005358 7.6e-126 455.7 454 54.8
Carub.0001s3568 Capsella rubella HOM05D004452 ORTHO05D005358 9.9e-126 455.3 460 55.7
Pp3c7_25670 Physcomitrium patens HOM05D004452 ORTHO05D005358 1.2e-123 448.4 777 38.4
CARHR036370 Cardamine hirsuta HOM05D004452 ORTHO05D005358 1.6e-120 438.0 462 54.5
Sed0026470 Sechium edule HOM05D004452 ORTHO05D005358 1.6e-120 438.0 458 53.5
BraA10t42942Z Brassica rapa HOM05D004452 ORTHO05D005358 1.8e-119 434.5 462 52.6
Aa31sc108G100 Aethionema arabicum HOM05D004452 ORTHO05D005358 9.0e-119 432.2 471 53.1
A10p06900 Brassica napus HOM05D004452 ORTHO05D005358 3.8e-117 426.8 468 51.1
unitig_26.g10021 Utricularia gibba HOM05D002518 ORTHO05D002630 8.7e-114 415.6 465 51.6
BcaC08g42910 Brassica carinata HOM05D004452 ORTHO05D005358 1.9e-113 414.5 454 52.0
BolC6t35279H Brassica oleracea HOM05D004452 ORTHO05D005358 2.5e-113 414.1 468 50.9
C06p01470 Brassica napus HOM05D004452 ORTHO05D005358 4.3e-113 413.3 454 51.8
unitig_749.g13678 Utricularia gibba HOM05D004452 ORTHO05D005358 7.6e-110 402.5 695 38.8
Nn7g37344 Nelumbo nucifera HOM05D004452 ORTHO05D005358 1.3e-109 401.7 296 68.6
BcaB07g33871 Brassica carinata HOM05D004452 ORTHO05D005358 1.7e-101 374.8 463 49.2
SEGI_30975 Sequoiadendron giganteum HOM05D004452 ORTHO05D005358 1.7e-96 358.2 313 60.7
AagrBONN_evm.TU.Sc2ySwM_117.2784 Anthoceros agrestis HOM05D004452 ORTHO05D005358 1.4e-95 355.1 461 46.2
Potri.002G125300 Populus trichocarpa HOM05D004452 ORTHO05D005358 1.4e-82 312.0 668 34.7
TAR625G1031 Trochodendron aralioides HOM05D004452 ORTHO05D005358 5.2e-82 310.1 260 65.8
Nn3g17073 Nelumbo nucifera HOM05D004452 ORTHO05D005358 6.7e-82 309.7 231 71.4
MD08G1099200 Malus domestica HOM05D004452 ORTHO05D005358 2.2e-64 251.5 197 69.0
SEGI_02411 Sequoiadendron giganteum HOM05D004452 ORTHO05D000001 4.1e-63 247.3 359 45.1
CBR_g24409 Chara braunii HOM05D004452 ORTHO05D005358 5.0e-61 240.4 360 42.2
MCO13G423 Micromonas commoda HOM05D004452 ORTHO05D005358 2.3e-58 231.5 760 30.1
MD08G1099300 Malus domestica HOM05D004452 ORTHO05D005358 1.0e-45 189.5 146 60.3
SalBow8G2832 Salvia bowleyana HOM05D004452 ORTHO05D005358 3.0e-45 188.0 160 63.8
SalBow8G5418 Salvia bowleyana HOM05D004452 ORTHO05D005358 3.0e-45 188.0 160 63.8
MD08G1099500 Malus domestica HOM05D004452 ORTHO05D005358 4.3e-44 184.1 148 58.8
Cre17.g705550 Chlamydomonas reinhardtii HOM05D004452 ORTHO05D005358 1.2e-43 182.6 477 31.2
Dinv35953 Davidia involucrata HOM05D004452 ORTHO05D005358 8.1e-43 179.9 155 55.5
Aa31LG7G10550 Aethionema arabicum HOM05D004452 ORTHO05D005358 2.1e-27 128.6 91 67.0
Nn3g18530 Nelumbo nucifera HOM05D004452 ORTHO05D005358 3.4e-17 94.7 159 42.1
Nn3g18532 Nelumbo nucifera HOM05D004452 ORTHO05D005358 4.5e-17 94.4 159 42.8
Aa31LG7G10540 Aethionema arabicum HOM05D004452 ORTHO05D005358 4.9e-16 90.9 95 56.8
Actinidia22636 Actinidia chinensis HOM05D004452 ORTHO05D005358 1.9e-15 89.0 70 57.1
TAR625G1460 Trochodendron aralioides HOM05D004452 ORTHO05D005358 2.1e-11 75.5 80 47.5
CARHR174670 Cardamine hirsuta HOM05D004452 ORTHO05D005358 3.1e-10 71.6 58 58.6


User provided reference genes

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