Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1120G021 Amborella trichopoda HOM05D004161 ORTHO05D031074 9.1e-34 146.4 75 100.0
ATR0580G326 Amborella trichopoda HOM05D004161 ORTHO05D005770 4.2e-23 110.9 71 77.5
MBI16_g31792_MAGBIO Magnolia biondii HOM05D004161 ORTHO05D005770 5.3e-18 94.0 71 64.8
TAR626G0400 Trochodendron aralioides HOM05D004161 ORTHO05D005770 1.9e-15 85.5 71 59.2
HPP92_017054 Vanilla planifolia HOM05D004161 ORTHO05D005770 8.0e-14 80.1 70 55.7
CDE03G0096 Ceratophyllum demersum HOM05D004161 ORTHO05D005770 1.0e-13 79.7 70 60.0
CDE04G3237 Ceratophyllum demersum HOM05D004161 ORTHO05D005770 1.4e-13 79.3 71 60.6
Mapoly0006s0112 Marchantia polymorpha HOM05D004161 ORTHO05D005770 3.0e-13 78.2 70 54.3
Aqoxy7G02966 Aquilegia oxysepala HOM05D004161 ORTHO05D005770 5.2e-13 77.4 71 59.2
PSO170G5806 Papaver somniferum HOM05D004161 ORTHO05D005770 6.8e-13 77.0 72 59.7
PSO063G1389 Papaver somniferum HOM05D004161 ORTHO05D005770 2.0e-12 75.5 72 58.3
Prupe.1G460800 Prunus persica HOM05D004161 ORTHO05D005770 2.0e-12 75.5 72 54.2
Sed0011095 Sechium edule HOM05D004161 ORTHO05D005770 4.4e-12 74.3 70 54.3
Psat5g024160 Pisum sativum HOM05D004161 ORTHO05D005770 5.7e-12 73.9 70 52.9
MELO3C011193.2 Cucumis melo HOM05D004161 ORTHO05D005770 7.5e-12 73.6 70 52.9
Glyma.04G075000 Glycine max HOM05D004161 ORTHO05D005770 7.5e-12 73.6 70 52.9
TPR.G12320 Trifolium pratense HOM05D004161 ORTHO05D005770 7.5e-12 73.6 70 52.9
TWI34G1526 Tripterygium wilfordii HOM05D004161 ORTHO05D005770 7.5e-12 73.6 69 53.6
CsaV3_2G031440 Cucumis sativus L. HOM05D004161 ORTHO05D005770 1.3e-11 72.8 70 52.9
Glyma.06G076000 Glycine max HOM05D004161 ORTHO05D005770 1.3e-11 72.8 70 52.9
Lj1g0012076 Lotus japonicus HOM05D004161 ORTHO05D005770 1.3e-11 72.8 70 52.9
Manes.03G003400 Manihot esculenta HOM05D004161 ORTHO05D005770 1.3e-11 72.8 70 54.3
Oeu019278.1 Olea europaea HOM05D004161 ORTHO05D005770 1.3e-11 72.8 70 54.3
GSVIVG01023827001 Vitis vinifera HOM05D004161 ORTHO05D005770 1.3e-11 72.8 70 52.9
CSS0014609 Camellia sinensis var. sinensis HOM05D004161 ORTHO05D005770 1.7e-11 72.4 70 54.3
Dinv10170 Davidia involucrata HOM05D004161 ORTHO05D005770 1.7e-11 72.4 70 52.9
Lalb_Chr23g0269071 Lupinus albus HOM05D004161 ORTHO05D005770 1.7e-11 72.4 70 51.4
VMungo1309G2307 Vigna mungo HOM05D004161 ORTHO05D005770 1.7e-11 72.4 70 52.9
Phvul.009G100700 Phaseolus vulgaris HOM05D004161 ORTHO05D005770 2.2e-11 72.0 70 52.9
Pp3c21_1460 Physcomitrium patens HOM05D004161 ORTHO05D005770 2.2e-11 72.0 78 50.0
Sed0017284 Sechium edule HOM05D004161 ORTHO05D005770 2.2e-11 72.0 70 51.4
CiPaw.07G213300 Carya illinoinensis HOM05D004161 ORTHO05D005770 2.8e-11 71.6 70 52.9
DCAR_027524 Daucus carota HOM05D004161 ORTHO05D005770 2.8e-11 71.6 68 52.9
Medtr3g108790 Medicago truncatula HOM05D004161 ORTHO05D005770 2.8e-11 71.6 70 51.4
Medtr8g006650 Medicago truncatula HOM05D004161 ORTHO05D031074 2.8e-11 71.6 70 51.4
MD08G1130400 Malus domestica HOM05D004161 ORTHO05D005770 3.7e-11 71.2 73 53.4
Potri.006G275100 Populus trichocarpa HOM05D004161 ORTHO05D005770 3.7e-11 71.2 71 53.5
PGR142G1061 Punica granatum HOM05D004161 ORTHO05D005770 3.7e-11 71.2 70 52.9
Ca_15670_v3 Cicer arietinum L. HOM05D004161 ORTHO05D005770 4.8e-11 70.9 70 51.4
Haze_21728 Corylus avellana HOM05D004161 ORTHO05D005770 4.8e-11 70.9 70 52.9
QL12p025061 Quercus lobata HOM05D004161 ORTHO05D005770 4.8e-11 70.9 70 51.4
vmacro01979 Vaccinium macrocarpon HOM05D004161 ORTHO05D005770 4.8e-11 70.9 70 52.9
Eucgr.C02093 Eucalyptus grandis HOM05D004161 ORTHO05D005770 6.3e-11 70.5 70 51.4
Nitab4.5_0001586g0240 Nicotiana tabacum HOM05D004161 ORTHO05D005770 6.3e-11 70.5 70 51.4
TWI32G1088 Tripterygium wilfordii HOM05D004161 ORTHO05D005770 6.3e-11 70.5 69 50.7
Atru.chr7.2634 Acer truncatum HOM05D004161 ORTHO05D005770 1.1e-10 69.7 70 50.0
Actinidia34376 Actinidia chinensis HOM05D004161 ORTHO05D005770 1.1e-10 69.7 70 51.4
Cfa013264 Carpinus fangiana HOM05D004161 ORTHO05D005770 1.1e-10 69.7 70 51.4
Cc08_g06790 Coffea canephora HOM05D004161 ORTHO05D005770 1.1e-10 69.7 70 51.4
SGA_v2.0_scaffold169G38590 Striga asiatica HOM05D004161 ORTHO05D005770 1.1e-10 69.7 70 51.4
Lj7C749T8 Lonicera japonica HOM05D004161 ORTHO05D005770 1.4e-10 69.3 70 51.4
MD15G1108500 Malus domestica HOM05D004161 ORTHO05D005770 1.4e-10 69.3 73 52.1
Pp3c18_17430 Physcomitrium patens HOM05D004161 ORTHO05D005770 1.4e-10 69.3 78 47.4
Rhsim11G0155000 Rhododendron simsii HOM05D004161 ORTHO05D005770 1.4e-10 69.3 70 51.4
RhsimUnG0126200 Rhododendron simsii HOM05D004161 ORTHO05D005770 1.4e-10 69.3 70 51.4
Lalb_Chr08g0243601 Lupinus albus HOM05D004161 ORTHO05D005770 1.8e-10 68.9 70 50.0
RcHm_v2.0_Chr6g0304891 Rosa chinensis HOM05D004161 ORTHO05D005770 1.8e-10 68.9 70 50.0
Sabra18G0014200 Salix brachista HOM05D004161 ORTHO05D005770 1.8e-10 68.9 71 52.1
Hma1.2p1_0432F.1_g151800 Hydrangea macrophylla HOM05D004161 ORTHO05D005770 2.4e-10 68.6 70 48.6
Peaxi162Scf00180g00518 Petunia axillaris HOM05D004161 ORTHO05D005770 2.4e-10 68.6 70 50.0
SMO367G0024 Selaginella moellendorffii HOM05D004161 ORTHO05D005770 2.4e-10 68.6 74 50.0
AagrBONN_evm.TU.Sc2ySwM_117.740 Anthoceros agrestis HOM05D004161 ORTHO05D005770 4.1e-10 67.8 54 61.1
FAN15G1150 Fragaria x ananassa HOM05D004161 ORTHO05D005770 4.1e-10 67.8 70 48.6
Manes.16G136100 Manihot esculenta HOM05D004161 ORTHO05D005770 4.1e-10 67.8 70 48.6
Solyc06g073150.3 Solanum lycopersicum HOM05D004161 ORTHO05D005770 4.1e-10 67.8 69 50.7
Sopen06g029500 Solanum pennellii HOM05D004161 ORTHO05D005770 4.1e-10 67.8 69 50.7
arahy.Tifrunner.gnm1.ann1.DD3LGG Arachis hypogaea HOM05D004161 ORTHO05D005770 5.3e-10 67.4 70 54.3
Migut.E01406 Erythranthe guttata HOM05D004161 ORTHO05D005770 5.3e-10 67.4 70 50.0
Nitab4.5_0002553g0070 Nicotiana tabacum HOM05D004161 ORTHO05D005770 5.3e-10 67.4 70 50.0
PGSC0003DMG400026918 Solanum tuberosum HOM05D004161 ORTHO05D005770 5.3e-10 67.4 69 50.7
CAN.G65.161 Capsicum annuum HOM05D004161 ORTHO05D005770 7.0e-10 67.0 70 50.0
ECA246G1306 Erigeron canadensis HOM05D004161 ORTHO05D005770 7.0e-10 67.0 70 48.6
HanXRQChr17g0533271 Helianthus annuus HOM05D004161 ORTHO05D005770 7.0e-10 67.0 70 48.6
Lsat_1_v5_gn_3_9100 Lactuca sativa HOM05D004161 ORTHO05D005770 7.0e-10 67.0 70 50.0
Potri.018G006100 Populus trichocarpa HOM05D004161 ORTHO05D005770 7.0e-10 67.0 71 50.7
Sabra06G0212900 Salix brachista HOM05D004161 ORTHO05D005770 7.0e-10 67.0 71 50.7
Gohir.D05G067400 Gossypium hirsutum HOM05D004161 ORTHO05D005770 9.1e-10 66.6 67 53.7
Gorai.009G068200 Gossypium raimondii HOM05D004161 ORTHO05D005770 9.1e-10 66.6 67 53.7
MSTRG.13941 Avicennia marina HOM05D004161 ORTHO05D005770 1.2e-09 66.2 70 50.0
FAN20G0045 Fragaria x ananassa HOM05D004161 ORTHO05D005770 1.6e-09 65.9 70 47.1
PGSC0003DMG400009240 Solanum tuberosum HOM05D004161 ORTHO05D005770 1.6e-09 65.9 70 50.0
SGA_v2.0_scaffold121G33036 Striga asiatica HOM05D004161 ORTHO05D005770 1.6e-09 65.9 70 48.6
Cpa.g.sc23.7 Carica papaya HOM05D004161 ORTHO05D005770 2.0e-09 65.5 64 53.1
Gohir.A05G064800 Gossypium hirsutum HOM05D004161 ORTHO05D005770 2.0e-09 65.5 67 52.2
Os04g0654700 Oryza sativa ssp. japonica HOM05D004161 ORTHO05D005770 2.0e-09 65.5 67 50.7
SalBow8G4837 Salvia bowleyana HOM05D004161 ORTHO05D005770 3.5e-09 64.7 70 48.6
Solyc11g017300.2 Solanum lycopersicum HOM05D004161 ORTHO05D005770 3.5e-09 64.7 70 50.0
Sopen11g009190 Solanum pennellii HOM05D004161 ORTHO05D005770 3.5e-09 64.7 70 50.0
Ciclev10008736m.g Citrus clementina HOM05D004161 ORTHO05D005770 4.5e-09 64.3 65 50.8
unitig_0.g2820 Utricularia gibba HOM05D004161 ORTHO05D005770 5.9e-09 63.9 71 53.5
Zm00001eb068020 Zea mays HOM05D004161 ORTHO05D005770 5.9e-09 63.9 71 49.3
Medtr8g006645 Medicago truncatula HOM05D007178 ORTHO05D009022 7.7e-09 63.5 63 50.8
FvH4_2g36890 Fragaria vesca HOM05D004161 ORTHO05D005770 1.0e-08 63.2 71 47.9
FAN27G0727 Fragaria x ananassa HOM05D004161 ORTHO05D005770 1.0e-08 63.2 71 47.9
CANSAT25G1154 Cannabis sativa HOM05D004161 ORTHO05D005770 1.7e-08 62.4 71 47.9
CARHR064530 Cardamine hirsuta HOM05D004161 ORTHO05D005770 1.7e-08 62.4 66 53.0
unitig_747.g21902 Utricularia gibba HOM05D004161 ORTHO05D005770 1.7e-08 62.4 71 52.1
Ah.11g043770 Amaranthus hybridus HOM05D004161 ORTHO05D005770 2.2e-08 62.0 69 47.8
COL.COLO4_19041 Corchorus olitorius HOM05D004161 ORTHO05D005770 2.2e-08 62.0 61 55.7
Duzib187G0390 Durio zibethinus HOM05D004161 ORTHO05D005770 2.2e-08 62.0 61 54.1
Thecc.09G006500 Theobroma cacao HOM05D004161 ORTHO05D005770 2.2e-08 62.0 61 55.7
AL2G30840 Arabidopsis lyrata HOM05D004161 ORTHO05D005770 3.8e-08 61.2 60 51.7
EL10Ac2g03746 Beta vulgaris HOM05D004161 ORTHO05D005770 3.8e-08 61.2 69 49.3
THA.LOC104821862 Tarenaya hassleriana HOM05D004161 ORTHO05D005770 5.0e-08 60.8 55 56.4
AT1G71230 Arabidopsis thaliana HOM05D004161 ORTHO05D005770 6.5e-08 60.5 60 50.0
Duzib168G1137 Durio zibethinus HOM05D004161 ORTHO05D005770 8.5e-08 60.1 64 50.0
Thhalv10018788m.g Eutrema salsugineum HOM05D004161 ORTHO05D005770 8.5e-08 60.1 60 55.0
SalBow4G1531 Salvia bowleyana HOM05D004161 ORTHO05D005770 3.2e-07 58.2 67 49.3
Aa31LG4G9280 Aethionema arabicum HOM05D004161 ORTHO05D005770 4.2e-07 57.8 69 46.4
Carub.0001s2242 Capsella rubella HOM05D004161 ORTHO05D005770 9.4e-07 56.6 60 48.3
Carub.0002s1811 Capsella rubella HOM05D004161 ORTHO05D005770 9.4e-07 56.6 48 56.2
AT1G22920 Arabidopsis thaliana HOM05D004161 ORTHO05D005770 1.2e-06 56.2 60 46.7
AUR62009062 Chenopodium quinoa HOM05D004161 ORTHO05D005770 1.6e-06 55.8 66 45.5
AUR62020608 Chenopodium quinoa HOM05D004161 ORTHO05D005770 1.6e-06 55.8 66 45.5
Sp1g20380 Schrenkiella parvula HOM05D004161 ORTHO05D005770 2.1e-06 55.5 60 46.7
AL1G36480 Arabidopsis lyrata HOM05D004161 ORTHO05D005770 2.7e-06 55.1 60 46.7
Sp5g26420 Schrenkiella parvula HOM05D004161 ORTHO05D005770 3.6e-06 54.7 43 60.5
BcaB07g32287 Brassica carinata HOM05D004161 ORTHO05D005770 4.7e-06 54.3 60 46.7
BcaC05g26198 Brassica carinata HOM05D004161 ORTHO05D005770 4.7e-06 54.3 60 46.7
A09p41820 Brassica napus HOM05D004161 ORTHO05D005770 4.7e-06 54.3 60 46.7
C05p22060 Brassica napus HOM05D004161 ORTHO05D005770 4.7e-06 54.3 60 46.7
BolC5t30902H Brassica oleracea HOM05D004161 ORTHO05D005770 4.7e-06 54.3 60 46.7
BraA09t39671Z Brassica rapa HOM05D004161 ORTHO05D005770 4.7e-06 54.3 60 46.7
Thhalv10008042m.g Eutrema salsugineum HOM05D004161 ORTHO05D005770 6.1e-06 53.9 60 46.7
BcaB03g14179 Brassica carinata HOM05D004161 ORTHO05D005770 8.0e-06 53.5 60 45.0
BraA07t29171Z Brassica rapa HOM05D004161 ORTHO05D005770 8.0e-06 53.5 60 45.0


User provided reference genes

Program Settings