Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1100G026 Amborella trichopoda HOM05D002864 ORTHO05D008485 8.7e-30 132.9 63 100.0
arahy.Tifrunner.gnm1.ann1.IM9F8N Arachis hypogaea HOM05D002864 ORTHO05D008485 4.3e-21 104.0 60 80.0
arahy.Tifrunner.gnm1.ann1.ID22MY Arachis hypogaea HOM05D002864 ORTHO05D008485 6.3e-20 100.1 53 86.8
CSS0047546 Camellia sinensis var. sinensis HOM05D002864 ORTHO05D008485 6.3e-20 100.1 55 85.5
CANSAT16G0032 Cannabis sativa HOM05D002864 ORTHO05D008485 6.3e-20 100.1 55 85.5
CAN.G366.9 Capsicum annuum HOM05D002864 ORTHO05D008485 6.3e-20 100.1 55 85.5
CAN.G537.1 Capsicum annuum HOM05D002864 ORTHO05D008485 6.3e-20 100.1 55 85.5
CAN.G539.3 Capsicum annuum HOM05D002864 ORTHO05D008485 6.3e-20 100.1 55 85.5
CAN.G761.1 Capsicum annuum HOM05D002864 ORTHO05D008485 6.3e-20 100.1 55 85.5
LjContig00315g0018050 Lotus japonicus HOM05D002864 ORTHO05D008485 6.3e-20 100.1 55 85.5
LjContig00439g0002067 Lotus japonicus HOM05D002864 ORTHO05D008485 6.3e-20 100.1 55 85.5
LjContig00446g0004288 Lotus japonicus HOM05D002864 ORTHO05D008485 6.3e-20 100.1 55 85.5
Lalb_Chr00c21g0405201 Lupinus albus HOM05D002864 ORTHO05D008485 6.3e-20 100.1 55 85.5
Lalb_Chr00c21g0405251 Lupinus albus HOM05D002864 ORTHO05D008485 6.3e-20 100.1 55 85.5
Lalb_Chr00c21g0405391 Lupinus albus HOM05D002864 ORTHO05D008485 6.3e-20 100.1 55 85.5
Lalb_Chr00c24g0407171 Lupinus albus HOM05D002864 ORTHO05D008485 6.3e-20 100.1 55 85.5
Lalb_Chr07g0190471 Lupinus albus HOM05D002864 ORTHO05D008485 6.3e-20 100.1 55 85.5
Nn1g09937 Nelumbo nucifera HOM05D002864 ORTHO05D008485 6.3e-20 100.1 55 85.5
Nn1g10176 Nelumbo nucifera HOM05D002864 ORTHO05D008485 6.3e-20 100.1 55 85.5
Peaxi162Scf36888g00001 Petunia axillaris HOM05D002864 ORTHO05D008485 6.3e-20 100.1 55 85.5
Psat0ss7220g0040 Pisum sativum HOM05D002864 ORTHO05D008485 6.3e-20 100.1 55 85.5
Solyc00g500362.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 6.3e-20 100.1 55 85.5
TAR371G0939 Trochodendron aralioides HOM05D002864 ORTHO05D008485 6.3e-20 100.1 55 85.5
CARHR288210 Cardamine hirsuta HOM05D002864 ORTHO05D008485 8.2e-20 99.8 55 83.6
Actinidia34819 Actinidia chinensis HOM05D002864 ORTHO05D008485 1.4e-19 99.0 53 86.8
Cfa021370 Carpinus fangiana HOM05D002864 ORTHO05D008485 1.4e-19 99.0 53 86.8
Thhalv10001274m.g Eutrema salsugineum HOM05D002864 ORTHO05D008485 1.4e-19 99.0 53 86.8
Solyc00g500260.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 1.4e-19 99.0 53 86.8
Solyc00g500312.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 1.4e-19 99.0 53 86.8
Ah.10g028190 Amaranthus hybridus HOM05D002864 ORTHO05D007972 2.4e-19 98.2 56 83.9
Ah.10g028740 Amaranthus hybridus HOM05D002864 ORTHO05D007972 2.4e-19 98.2 56 83.9
ATR0709G086 Amborella trichopoda HOM05D002864 ORTHO05D008485 2.4e-19 98.2 55 81.8
SalBow1G5070 Salvia bowleyana HOM05D002864 ORTHO05D008485 3.1e-19 97.8 53 84.9
Sed0011141 Sechium edule HOM05D002864 ORTHO05D008485 4.1e-19 97.4 55 83.6
Sed0025017 Sechium edule HOM05D002864 ORTHO05D008485 4.1e-19 97.4 55 83.6
PGSC0003DMG400033612 Solanum tuberosum HOM05D002864 ORTHO05D008485 4.1e-19 97.4 55 83.6
Atru.chr6.1811 Acer truncatum HOM05D002864 ORTHO05D008485 5.3e-19 97.1 53 84.9
SGA_v2.0_scaffold420G51305 Striga asiatica HOM05D002864 ORTHO05D008485 5.3e-19 97.1 52 86.5
unitig_87.g28031 Utricularia gibba HOM05D002864 ORTHO05D008485 5.3e-19 97.1 52 86.5
SHI26647 Sapria himalayana HOM05D002864 ORTHO05D008485 6.9e-19 96.7 52 86.5
A04p09410 Brassica napus HOM05D002864 ORTHO05D008485 9.0e-19 96.3 55 83.6
BolSC28t60372H Brassica oleracea HOM05D002864 ORTHO05D008485 9.0e-19 96.3 55 83.6
BraSC159t45731Z Brassica rapa HOM05D002864 ORTHO05D008485 9.0e-19 96.3 55 83.6
BraSC54t46369Z Brassica rapa HOM05D002864 ORTHO05D008485 9.0e-19 96.3 55 83.6
CAN.G1001.40 Capsicum annuum HOM05D002864 ORTHO05D008485 9.0e-19 96.3 55 81.8
Lsat_1_v5_gn_4_66001 Lactuca sativa HOM05D002864 ORTHO05D008485 9.0e-19 96.3 55 81.8
Lsat_1_v5_gn_7_96661 Lactuca sativa HOM05D002864 ORTHO05D008485 9.0e-19 96.3 55 81.8
Lj2A1230T121 Lonicera japonica HOM05D002864 ORTHO05D008485 9.0e-19 96.3 53 84.9
Lalb_Chr11g0070141 Lupinus albus HOM05D002864 ORTHO05D008485 9.0e-19 96.3 55 83.6
Lalb_Chr11g0070221 Lupinus albus HOM05D002864 ORTHO05D008485 9.0e-19 96.3 55 83.6
AT2G07725 Arabidopsis thaliana HOM05D002864 ORTHO05D008485 1.2e-18 95.9 55 81.8
ATMG00210 Arabidopsis thaliana HOM05D002864 ORTHO05D008485 1.2e-18 95.9 55 81.8
CAN.G826.1 Capsicum annuum HOM05D002864 ORTHO05D008485 1.2e-18 95.9 55 81.8
CARHR282720 Cardamine hirsuta HOM05D002864 ORTHO05D008485 1.2e-18 95.9 55 81.8
Nitab4.5_0004300g0150 Nicotiana tabacum HOM05D002864 ORTHO05D008485 1.2e-18 95.9 55 81.8
ATR0015G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 1.5e-18 95.5 55 80.0
AUR62042335 Chenopodium quinoa HOM05D002864 ORTHO05D008485 3.4e-18 94.4 52 86.5
RhsimMtG0002800 Rhododendron simsii HOM05D002864 ORTHO05D008485 3.4e-18 94.4 58 77.6
ATR0091G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 4.5e-18 94.0 55 80.0
Aqoxy12s038 Aquilegia oxysepala HOM05D002864 ORTHO05D008485 5.9e-18 93.6 55 78.2
HanXRQChr01g0001471 Helianthus annuus HOM05D002864 ORTHO05D008485 7.6e-18 93.2 55 78.2
HanXRQChr04g0101201 Helianthus annuus HOM05D002864 ORTHO05D008485 7.6e-18 93.2 55 78.2
HanXRQMTg0579191 Helianthus annuus HOM05D002864 ORTHO05D008485 7.6e-18 93.2 55 78.2
Ca_08792_v3 Cicer arietinum L. HOM05D000255 ORTHO05D028863 1.0e-17 92.8 50 86.0
Ca_22173_v3 Cicer arietinum L. HOM05D005210 ORTHO05D010080 1.0e-17 92.8 50 86.0
PGR028G0017 Punica granatum HOM05D002864 ORTHO05D008485 5.0e-17 90.5 55 80.0
ATR0573G003 Amborella trichopoda HOM05D002864 ORTHO05D008485 1.1e-16 89.4 53 79.2
BolSC28t60317H Brassica oleracea HOM05D002864 ORTHO05D008485 1.1e-16 89.4 53 81.1
Lalb_Chr00c21g0405111 Lupinus albus HOM05D002864 ORTHO05D008485 1.1e-16 89.4 54 83.3
BraSC48t46332Z Brassica rapa HOM05D002864 ORTHO05D008485 2.5e-16 88.2 49 85.7
ClCG09G013010 Citrullus lanatus HOM05D002864 ORTHO05D007972 2.5e-16 88.2 51 82.4
CAN.G502.17 Capsicum annuum HOM05D002864 ORTHO05D008485 5.5e-16 87.0 57 71.9
Gohir.A06G146200 Gossypium hirsutum HOM05D002864 ORTHO05D008485 1.2e-15 85.9 48 83.3
Gohir.D12G077000 Gossypium hirsutum HOM05D002864 ORTHO05D008485 2.1e-15 85.1 48 83.3
CAN.G1439.10 Capsicum annuum HOM05D002864 ORTHO05D008485 2.7e-15 84.7 53 77.4
DCAR_032433 Daucus carota HOM05D002864 ORTHO05D008485 2.7e-15 84.7 51 78.4
Rhsim07G0136600 Rhododendron simsii HOM05D002864 ORTHO05D008485 3.6e-15 84.3 55 76.4
ATR0104G021 Amborella trichopoda HOM05D002864 ORTHO05D008485 4.6e-15 84.0 56 71.4
ATR0959G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 4.6e-15 84.0 49 81.6
Zm00001eb299530 Zea mays HOM05D002864 ORTHO05D008485 1.8e-14 82.0 53 73.6
ATR0004G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 3.9e-14 80.9 54 68.5
SHI40661 Sapria himalayana HOM05D002864 ORTHO05D008485 6.7e-14 80.1 51 76.5
ATR0573G002 Amborella trichopoda HOM05D007099 ORTHO05D009081 4.3e-13 77.4 43 83.7
SEGI_29573 Sequoiadendron giganteum HOM05D002864 ORTHO05D008485 7.4e-13 76.6 48 75.0
RcHm_v2.0_Chr5g0061711 Rosa chinensis HOM05D002864 ORTHO05D008485 1.3e-12 75.9 51 72.5
FvH4_3g34030 Fragaria vesca HOM05D002864 ORTHO05D008485 8.2e-12 73.2 51 68.6
FAN11G1817 Fragaria x ananassa HOM05D002864 ORTHO05D008485 8.2e-12 73.2 51 68.6
FAN16G0826 Fragaria x ananassa HOM05D002864 ORTHO05D008485 2.4e-11 71.6 51 66.7
FAN21G0602 Fragaria x ananassa HOM05D002864 ORTHO05D008485 2.4e-11 71.6 51 66.7
BraSC48t46241Z Brassica rapa HOM05D002864 ORTHO05D008485 5.3e-11 70.5 52 69.2
ATR0135G003 Amborella trichopoda HOM05D002864 ORTHO05D008485 2.6e-10 68.2 36 88.9
Medtr2g096500 Medicago truncatula HOM05D006496 ORTHO05D008485 2.6e-10 68.2 52 67.3
MELO3C000759.2 Cucumis melo HOM05D002864 ORTHO05D008485 3.8e-09 64.3 42 73.8
MELO3C035260.2 Cucumis melo HOM05D002864 ORTHO05D008485 3.8e-09 64.3 42 73.8
Phvul.011G109300 Phaseolus vulgaris HOM05D007099 ORTHO05D009081 1.1e-08 62.8 36 75.0
HanXRQChr13g0393901 Helianthus annuus HOM05D002864 ORTHO05D008485 4.2e-08 60.8 36 80.6
C09p10440 Brassica napus HOM05D002864 ORTHO05D008485 6.1e-07 57.0 33 75.8
Nitab4.5_0000120g0100 Nicotiana tabacum HOM05D002864 ORTHO05D008485 3.0e-06 54.7 55 54.5


User provided reference genes

Program Settings