Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1098G153 Amborella trichopoda HOM05D004382 ORTHO05D005181 1.2e-71 273.1 142 100.0
Actinidia37109 Actinidia chinensis HOM05D004382 ORTHO05D005181 6.9e-51 204.1 144 77.8
MBI02_g25371_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 1.5e-50 203.0 143 79.7
Prupe.4G143700 Prunus persica HOM05D004382 ORTHO05D005181 5.9e-50 201.1 142 77.5
Nn3g20146 Nelumbo nucifera HOM05D002089 ORTHO05D011346 1.3e-49 199.9 135 80.0
Gohir.A04G050200 Gossypium hirsutum HOM05D004382 ORTHO05D005181 1.7e-49 199.5 142 76.1
MD05G1215200 Malus domestica HOM05D004382 ORTHO05D005181 1.7e-49 199.5 142 76.1
CiPaw.11G067100 Carya illinoinensis HOM05D004382 ORTHO05D005181 3.8e-49 198.4 142 75.4
MD10G1198300 Malus domestica HOM05D004382 ORTHO05D005181 5.0e-49 198.0 142 74.6
Gohir.D05G330700 Gossypium hirsutum HOM05D004382 ORTHO05D005181 6.5e-49 197.6 142 75.4
Gorai.009G354500 Gossypium raimondii HOM05D004382 ORTHO05D005181 6.5e-49 197.6 142 75.4
Lj3g0019499 Lotus japonicus HOM05D004382 ORTHO05D005181 6.5e-49 197.6 142 74.6
Potri.001G438700 Populus trichocarpa HOM05D004382 ORTHO05D005181 6.5e-49 197.6 142 75.4
QL04p074767 Quercus lobata HOM05D004382 ORTHO05D005181 6.5e-49 197.6 141 78.0
SalBow5G1313 Salvia bowleyana HOM05D004382 ORTHO05D005181 6.5e-49 197.6 138 74.6
SalBow5G2519 Salvia bowleyana HOM05D004382 ORTHO05D005181 6.5e-49 197.6 138 74.6
Cc05_g15930 Coffea canephora HOM05D004382 ORTHO05D005181 8.5e-49 197.2 142 76.1
CANSAT56G1367 Cannabis sativa HOM05D004382 ORTHO05D005181 1.1e-48 196.8 142 73.9
AUR62022575 Chenopodium quinoa HOM05D004382 ORTHO05D005181 1.4e-48 196.4 143 74.8
SalBow8G0430 Salvia bowleyana HOM05D004382 ORTHO05D005181 1.4e-48 196.4 142 74.6
Medtr2g064650 Medicago truncatula HOM05D004382 ORTHO05D005181 1.9e-48 196.1 142 76.8
arahy.Tifrunner.gnm1.ann1.9QX17Y Arachis hypogaea HOM05D004382 ORTHO05D005181 2.5e-48 195.7 142 74.6
AUR62004366 Chenopodium quinoa HOM05D004382 ORTHO05D005181 2.5e-48 195.7 143 74.8
Hma1.2p1_0321F.1_g124500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 2.5e-48 195.7 143 76.2
Nitab4.5_0002475g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 2.5e-48 195.7 139 74.1
TAR627G0744 Trochodendron aralioides HOM05D004382 ORTHO05D005181 2.5e-48 195.7 135 77.8
Nitab4.5_0000313g0040 Nicotiana tabacum HOM05D004382 ORTHO05D005181 3.2e-48 195.3 133 75.9
Potri.011G142200 Populus trichocarpa HOM05D004382 ORTHO05D005181 3.2e-48 195.3 142 74.6
Aqoxy1G01569 Aquilegia oxysepala HOM05D004382 ORTHO05D005181 4.2e-48 194.9 143 73.4
TPR.G10344 Trifolium pratense HOM05D004382 ORTHO05D005181 4.2e-48 194.9 142 75.4
Atru.chr2.1854 Acer truncatum HOM05D004382 ORTHO05D005181 5.5e-48 194.5 142 76.8
Gorai.002G032900 Gossypium raimondii HOM05D004382 ORTHO05D005181 5.5e-48 194.5 144 72.2
GSVIVG01020484001 Vitis vinifera HOM05D004382 ORTHO05D005181 5.5e-48 194.5 142 75.4
COL.COLO4_05073 Corchorus olitorius HOM05D004382 ORTHO05D005181 7.2e-48 194.1 142 73.9
Phvul.005G055200 Phaseolus vulgaris HOM05D004382 ORTHO05D005181 7.2e-48 194.1 142 73.2
Sabra11G0127600 Salix brachista HOM05D004382 ORTHO05D005181 7.2e-48 194.1 142 73.2
MSTRG.7052 Avicennia marina HOM05D004382 ORTHO05D005181 9.4e-48 193.7 142 73.2
CSS0016237 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 9.4e-48 193.7 139 75.5
Ciclev10022793m.g Citrus clementina HOM05D004382 ORTHO05D005181 1.2e-47 193.4 142 72.5
FvH4_3g16050 Fragaria vesca HOM05D004382 ORTHO05D005181 1.2e-47 193.4 142 74.6
FAN11G1612 Fragaria x ananassa HOM05D004382 ORTHO05D005181 1.2e-47 193.4 142 74.6
arahy.Tifrunner.gnm1.ann1.HCTL36 Arachis hypogaea HOM05D004382 ORTHO05D005181 2.1e-47 192.6 142 73.9
CAN.G943.25 Capsicum annuum HOM05D004382 ORTHO05D005181 2.1e-47 192.6 139 75.5
Ca_03704_v3 Cicer arietinum L. HOM05D004382 ORTHO05D005181 2.1e-47 192.6 142 75.4
FAN25G3309 Fragaria x ananassa HOM05D004382 ORTHO05D005181 2.1e-47 192.6 142 73.9
Duzib187G1376 Durio zibethinus HOM05D004382 ORTHO05D005181 2.7e-47 192.2 142 74.6
CSS0001445 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 4.6e-47 191.4 142 73.9
Glyma.08G173700 Glycine max HOM05D004382 ORTHO05D005181 4.6e-47 191.4 142 72.5
Glyma.15G253700 Glycine max HOM05D004382 ORTHO05D005181 4.6e-47 191.4 142 73.2
Hma1.2p1_0193F.1_g084500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 4.6e-47 191.4 142 73.2
Gohir.A01G037100 Gossypium hirsutum HOM05D004382 ORTHO05D005181 6.1e-47 191.0 144 70.8
unitig_8.g4771 Utricularia gibba HOM05D004382 ORTHO05D005181 6.1e-47 191.0 139 72.7
VMungo1080G1647 Vigna mungo HOM05D004382 ORTHO05D005181 6.1e-47 191.0 142 72.5
FAN21G1818 Fragaria x ananassa HOM05D004382 ORTHO05D005181 7.9e-47 190.7 142 73.2
Peaxi162Scf00232g01129 Petunia axillaris HOM05D004382 ORTHO05D005181 7.9e-47 190.7 139 73.4
Psat1g002320 Pisum sativum HOM05D004382 ORTHO05D005181 1.0e-46 190.3 142 73.9
Thecc.07G156900 Theobroma cacao HOM05D004382 ORTHO05D005181 1.0e-46 190.3 142 73.9
TWI38G0625 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 1.0e-46 190.3 143 73.4
Solyc07g066310.3 Solanum lycopersicum HOM05D004382 ORTHO05D005181 1.4e-46 189.9 139 74.1
Sopen07g034490 Solanum pennellii HOM05D004382 ORTHO05D005181 1.4e-46 189.9 139 74.1
HPP92_016563 Vanilla planifolia HOM05D004382 ORTHO05D005181 1.4e-46 189.9 142 69.7
Migut.H01700 Erythranthe guttata HOM05D004382 ORTHO05D005181 1.8e-46 189.5 142 71.8
SGA_v2.0_scaffold49G18168 Striga asiatica HOM05D004382 ORTHO05D005181 1.8e-46 189.5 142 74.6
Sed0014118 Sechium edule HOM05D004382 ORTHO05D005181 3.0e-46 188.7 142 73.9
PGSC0003DMG400022241 Solanum tuberosum HOM05D004382 ORTHO05D005181 3.0e-46 188.7 139 73.4
HanXRQChr08g0232801 Helianthus annuus HOM05D004382 ORTHO05D005181 3.9e-46 188.3 135 75.6
Nitab4.5_0000134g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 3.9e-46 188.3 143 72.0
MSTRG.14535 Avicennia marina HOM05D004382 ORTHO05D005181 5.1e-46 188.0 142 71.8
CDE04G0985 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 5.1e-46 188.0 142 74.6
HanXRQChr05g0160651 Helianthus annuus HOM05D004382 ORTHO05D005181 5.1e-46 188.0 142 72.5
CsaV3_4G007600 Cucumis sativus L. HOM05D004382 ORTHO05D005181 6.7e-46 187.6 142 73.2
Lalb_Chr01g0015971 Lupinus albus HOM05D004382 ORTHO05D005181 6.7e-46 187.6 137 75.2
A07p44190 Brassica napus HOM05D004382 ORTHO05D005181 1.1e-45 186.8 142 70.4
BraA07t31927Z Brassica rapa HOM05D004382 ORTHO05D005181 1.1e-45 186.8 142 70.4
DCAR_013749 Daucus carota HOM05D004382 ORTHO05D005181 1.1e-45 186.8 143 72.7
Rhsim04G0006200 Rhododendron simsii HOM05D004382 ORTHO05D005181 1.1e-45 186.8 143 74.8
RcHm_v2.0_Chr5g0027021 Rosa chinensis HOM05D004382 ORTHO05D005181 1.1e-45 186.8 142 73.2
Ah.08g216320 Amaranthus hybridus HOM05D004382 ORTHO05D005181 1.5e-45 186.4 142 72.5
PGR142G2616 Punica granatum HOM05D004382 ORTHO05D005181 1.5e-45 186.4 142 73.2
TWI38G0568 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 1.5e-45 186.4 143 72.7
ClCG07G010700 Citrullus lanatus HOM05D004382 ORTHO05D005181 2.0e-45 186.0 142 71.8
CDE12G0390 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 2.6e-45 185.7 142 73.2
CARHR072720 Cardamine hirsuta HOM05D004382 ORTHO05D005181 3.3e-45 185.3 142 69.0
Peaxi162Scf00006g00149 Petunia axillaris HOM05D004382 ORTHO05D005181 3.3e-45 185.3 136 75.0
Potri.001G438800 Populus trichocarpa HOM05D004382 ORTHO05D005181 3.3e-45 185.3 144 72.2
Sed0025739 Sechium edule HOM05D004382 ORTHO05D005181 3.3e-45 185.3 142 73.2
THA.LOC104812349 Tarenaya hassleriana HOM05D004382 ORTHO05D005181 3.3e-45 185.3 118 79.7
BcaC08g47468 Brassica carinata HOM05D004382 ORTHO05D005181 7.4e-45 184.1 142 69.0
C06p52920 Brassica napus HOM05D004382 ORTHO05D005181 7.4e-45 184.1 142 69.0
BolC6t40310H Brassica oleracea HOM05D004382 ORTHO05D005181 7.4e-45 184.1 142 69.0
Carub.0002s2591 Capsella rubella HOM05D004382 ORTHO05D005181 7.4e-45 184.1 142 69.0
AT1G79040 Arabidopsis thaliana HOM05D004382 ORTHO05D005181 1.3e-44 183.3 142 69.0
Sc16g0003480 Simmondsia chinensis HOM05D004382 ORTHO05D005181 1.3e-44 183.3 142 69.7
BcaB02g08662 Brassica carinata HOM05D004382 ORTHO05D005181 1.7e-44 183.0 142 68.3
Oeu002809.1 Olea europaea HOM05D004382 ORTHO05D005181 1.7e-44 183.0 142 70.4
Aa31LG4G1950 Aethionema arabicum HOM05D004382 ORTHO05D005181 2.8e-44 182.2 143 69.9
ClCG11G016280 Citrullus lanatus HOM05D004382 ORTHO05D005181 2.8e-44 182.2 142 68.3
BcaC03g15860 Brassica carinata HOM05D004382 ORTHO05D005181 3.7e-44 181.8 142 69.0
A02p22470 Brassica napus HOM05D004382 ORTHO05D005181 3.7e-44 181.8 142 69.0
C02p36150 Brassica napus HOM05D004382 ORTHO05D005181 3.7e-44 181.8 142 69.0
BolC2t09629H Brassica oleracea HOM05D004382 ORTHO05D005181 3.7e-44 181.8 142 69.0
BraA02t07252Z Brassica rapa HOM05D004382 ORTHO05D005181 3.7e-44 181.8 142 69.0
DCAR_016816 Daucus carota HOM05D004382 ORTHO05D005181 3.7e-44 181.8 139 72.7
A07p27340 Brassica napus HOM05D004382 ORTHO05D005181 1.1e-43 180.3 143 68.5
BraA07t30375Z Brassica rapa HOM05D004382 ORTHO05D005181 1.1e-43 180.3 143 68.5
Hund10309 Selenicereus undatus HOM05D004382 ORTHO05D005181 1.1e-43 180.3 118 78.0
BcaB02g07194 Brassica carinata HOM05D004382 ORTHO05D005181 1.4e-43 179.9 143 68.5
BcaB05g25168 Brassica carinata HOM05D004382 ORTHO05D005181 1.4e-43 179.9 143 68.5
Sp5g34090 Schrenkiella parvula HOM05D004382 ORTHO05D005181 1.4e-43 179.9 143 67.1
Lalb_Chr25g0285191 Lupinus albus HOM05D004382 ORTHO05D005181 1.8e-43 179.5 138 71.7
BcaC08g45389 Brassica carinata HOM05D004382 ORTHO05D005181 2.4e-43 179.1 143 68.5
C06p30200 Brassica napus HOM05D004382 ORTHO05D005181 2.4e-43 179.1 143 68.5
BolC6t38183H Brassica oleracea HOM05D004382 ORTHO05D005181 2.4e-43 179.1 143 68.5
Potri.011G142300 Populus trichocarpa HOM05D004382 ORTHO05D005181 2.4e-43 179.1 143 72.7
EL10Ac4g08547 Beta vulgaris HOM05D004382 ORTHO05D005181 3.1e-43 178.7 143 72.0
Thhalv10019302m.g Eutrema salsugineum HOM05D004382 ORTHO05D005181 3.1e-43 178.7 143 67.1
Nitab4.5_0001791g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 3.1e-43 178.7 144 70.1
PSO541G3267 Papaver somniferum HOM05D004382 ORTHO05D005181 4.1e-43 178.3 144 67.4
PSO675G7775 Papaver somniferum HOM05D004382 ORTHO05D005181 4.1e-43 178.3 144 67.4
ECA236G0888 Erigeron canadensis HOM05D004382 ORTHO05D005181 5.3e-43 177.9 137 70.1
Lalb_Chr03g0031561 Lupinus albus HOM05D004382 ORTHO05D005181 2.0e-42 176.0 144 68.8
CDE11G0376 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 2.6e-42 175.6 142 71.8
Oeu003841.1 Olea europaea HOM05D004382 ORTHO05D005181 2.6e-42 175.6 144 70.8
DCAR_009633 Daucus carota HOM05D004382 ORTHO05D005181 3.4e-42 175.3 143 69.2
Manes.15G102500 Manihot esculenta HOM05D004382 ORTHO05D005181 4.5e-42 174.9 144 68.1
vmacro09788 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 7.7e-42 174.1 144 68.8
Eucgr.F01447 Eucalyptus grandis HOM05D004382 ORTHO05D005181 1.0e-41 173.7 158 65.2
AL2G39500 Arabidopsis lyrata HOM05D004382 ORTHO05D005181 5.0e-41 171.4 134 67.9
Sed0016780 Sechium edule HOM05D004382 ORTHO05D005181 5.0e-41 171.4 137 69.3
Manes.03G082900 Manihot esculenta HOM05D004382 ORTHO05D005181 8.5e-41 170.6 143 69.2
Lsat_1_v5_gn_7_116120 Lactuca sativa HOM05D004382 ORTHO05D005181 5.5e-40 167.9 143 65.0
Os08g0200300 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 5.5e-40 167.9 126 69.0
Zm00001eb171230 Zea mays HOM05D004382 ORTHO05D005181 1.6e-39 166.4 116 75.0
Os07g0147550 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 5.2e-38 161.4 143 62.2
Solyc12g017250.2 Solanum lycopersicum HOM05D004382 ORTHO05D005181 1.1e-37 160.2 137 62.8
Sopen12g008070 Solanum pennellii HOM05D004382 ORTHO05D005181 2.0e-37 159.5 137 63.5
Os07g0147500 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 2.2e-36 156.0 141 59.6
SEGI_14655 Sequoiadendron giganteum HOM05D004382 ORTHO05D005181 2.8e-36 155.6 132 63.6
Sabra11G0127700 Salix brachista HOM05D004382 ORTHO05D005181 3.7e-36 155.2 144 65.3
Dinv19628 Davidia involucrata HOM05D006828 ORTHO05D008312 2.4e-35 152.5 88 85.2
Rhsim06G0237200 Rhododendron simsii HOM05D006828 ORTHO05D008312 2.6e-34 149.1 89 82.0
Eucgr.F03186 Eucalyptus grandis HOM05D004382 ORTHO05D005181 4.5e-34 148.3 111 71.2
Gohir.D01G024400 Gossypium hirsutum HOM05D004382 ORTHO05D005181 3.8e-33 145.2 114 67.5
Sabra16G0296700 Salix brachista HOM05D004382 ORTHO05D005181 1.1e-32 143.7 162 56.8
SMO134G0197 Selaginella moellendorffii HOM05D004382 ORTHO05D005181 1.9e-32 142.9 118 64.4
vmacro11652 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 5.5e-32 141.4 156 58.3
Mapoly0001s0109 Marchantia polymorpha HOM05D004382 ORTHO05D005181 2.7e-31 139.0 143 56.6
Pp3c27_2340 Physcomitrium patens HOM05D004382 ORTHO05D005181 1.8e-30 136.3 117 59.8
MBI18_g37150_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 5.2e-30 134.8 142 60.6
Pp3c16_5650 Physcomitrium patens HOM05D004382 ORTHO05D005181 5.7e-29 131.3 140 51.4
Pp3c5_4230 Physcomitrium patens HOM05D004382 ORTHO05D005181 1.1e-27 127.1 141 53.9
Pp3c27_2320 Physcomitrium patens HOM05D004382 ORTHO05D005181 1.4e-27 126.7 117 58.1
Mapoly0006s0055 Marchantia polymorpha HOM05D004382 ORTHO05D005181 4.1e-27 125.2 139 53.2
AagrBONN_evm.TU.Sc2ySwM_228.2640 Anthoceros agrestis HOM05D004382 ORTHO05D005181 7.0e-27 124.4 142 49.3
PGSC0003DMG400002312 Solanum tuberosum HOM05D004382 ORTHO05D005181 8.5e-25 117.5 137 53.3
MELO3C016181.2 Cucumis melo HOM05D004382 ORTHO05D005181 7.5e-21 104.4 92 66.3
Cpa.g.c38697 Carica papaya HOM05D004382 ORTHO05D005181 9.8e-21 104.0 53 90.6
Cpa.g.c37194 Carica papaya HOM05D004382 ORTHO05D005181 3.7e-20 102.1 92 67.4
PGR083G0343 Punica granatum HOM05D004382 ORTHO05D005181 3.7e-20 102.1 103 61.2
CBR_g30109 Chara braunii HOM05D000004 ORTHO05D000002 6.3e-20 101.3 67 68.7
PRCOL_00003342 Prasinoderma coloniale HOM05D004382 ORTHO05D005181 1.4e-19 100.1 88 55.7
Haze_08525 Corylus avellana HOM05D004382 ORTHO05D005181 8.6e-17 90.9 50 86.0
Cre06.g261000 Chlamydomonas reinhardtii HOM05D004382 ORTHO05D005181 5.5e-16 88.2 102 48.0
Atru.chr6.732 Acer truncatum HOM05D004382 ORTHO05D005181 6.3e-12 74.7 82 59.8
TAR626G0945 Trochodendron aralioides HOM05D004382 ORTHO05D005181 7.0e-11 71.2 76 61.8
TPR.G25891 Trifolium pratense HOM05D004382 ORTHO05D005181 1.8e-06 56.6 32 90.6


User provided reference genes

Program Settings