Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1098G023 Amborella trichopoda HOM05D006918 ORTHO05D008525 2.0e-17 94.7 44 100.0
Nn7g37872 Nelumbo nucifera HOM05D006918 ORTHO05D008525 4.7e-14 83.6 43 88.4
TAR627G0890 Trochodendron aralioides HOM05D006918 ORTHO05D008525 8.8e-13 79.3 42 83.3
Migut.M01563 Erythranthe guttata HOM05D006918 ORTHO05D008525 1.2e-12 79.0 43 79.1
TAR636G1403 Trochodendron aralioides HOM05D006918 ORTHO05D008525 1.5e-12 78.6 43 79.1
CDE04G0465 Ceratophyllum demersum HOM05D006918 ORTHO05D008525 2.0e-12 78.2 44 77.3
Cc05_g15990 Coffea canephora HOM05D006918 ORTHO05D008525 3.4e-12 77.4 43 81.4
Lj3g0009186 Lotus japonicus HOM05D006918 ORTHO05D008525 3.4e-12 77.4 43 81.4
Sc03g0007940 Simmondsia chinensis HOM05D006918 ORTHO05D008525 3.4e-12 77.4 43 76.7
Dinv19625 Davidia involucrata HOM05D006918 ORTHO05D008525 4.4e-12 77.0 42 81.0
PSO541G4556 Papaver somniferum HOM05D006918 ORTHO05D008525 4.4e-12 77.0 41 80.5
PSO675G9078 Papaver somniferum HOM05D006918 ORTHO05D008525 4.4e-12 77.0 41 80.5
Cfa019430 Carpinus fangiana HOM05D006918 ORTHO05D008525 5.7e-12 76.6 44 72.7
Haze_08532 Corylus avellana HOM05D006918 ORTHO05D008525 5.7e-12 76.6 44 72.7
Ca_03688_v3 Cicer arietinum L. HOM05D006918 ORTHO05D008525 7.5e-12 76.3 43 79.1
Potri.011G144300 Populus trichocarpa HOM05D006918 ORTHO05D008525 7.5e-12 76.3 44 72.7
Sabra11G0128500 Salix brachista HOM05D006918 ORTHO05D008525 7.5e-12 76.3 44 72.7
Dinv42519 Davidia involucrata HOM05D006918 ORTHO05D008525 1.7e-11 75.1 42 78.6
CSS0007445 Camellia sinensis var. sinensis HOM05D006918 ORTHO05D008525 2.2e-11 74.7 43 74.4
CSS0011318 Camellia sinensis var. sinensis HOM05D006918 ORTHO05D008525 2.2e-11 74.7 43 74.4
Oeu056983.1 Olea europaea HOM05D006918 ORTHO05D008525 2.2e-11 74.7 39 82.1
CSS0032788 Camellia sinensis var. sinensis HOM05D006918 ORTHO05D008525 2.8e-11 74.3 42 76.2
DCAR_016820 Daucus carota HOM05D006918 ORTHO05D008525 3.7e-11 73.9 42 81.0
CiPaw.12G045100 Carya illinoinensis HOM05D006918 ORTHO05D008525 4.8e-11 73.6 44 75.0
Cpa.g.sc10.35 Carica papaya HOM05D006918 ORTHO05D008525 6.3e-11 73.2 42 71.4
Potri.001G457300 Populus trichocarpa HOM05D006918 ORTHO05D008525 6.3e-11 73.2 44 70.5
HanXRQChr05g0161001 Helianthus annuus HOM05D006918 ORTHO05D008525 8.3e-11 72.8 41 73.2
Lsat_1_v5_gn_7_72161 Lactuca sativa HOM05D006918 ORTHO05D008525 1.1e-10 72.4 42 73.8
Sabra16G0310000 Salix brachista HOM05D006918 ORTHO05D008525 1.4e-10 72.0 44 68.2
Nitab4.5_0001749g0050 Nicotiana tabacum HOM05D006918 ORTHO05D008525 3.1e-10 70.9 41 75.6
Nitab4.5_0008437g0030 Nicotiana tabacum HOM05D006918 ORTHO05D008525 3.1e-10 70.9 41 75.6
Peaxi162Scf00452g00086 Petunia axillaris HOM05D006918 ORTHO05D008525 3.1e-10 70.9 41 75.6
Thecc.07G154400 Theobroma cacao HOM05D006918 ORTHO05D008525 3.1e-10 70.9 43 65.1
Aqoxy6G01201 Aquilegia oxysepala HOM05D006918 ORTHO05D008525 5.4e-10 70.1 40 82.5
TPR.G9758 Trifolium pratense HOM05D006918 ORTHO05D008525 5.4e-10 70.1 44 68.2
DCAR_013746 Daucus carota HOM05D006918 ORTHO05D008525 9.1e-10 69.3 42 71.4
Atru.chr12.2189 Acer truncatum HOM05D006918 ORTHO05D008525 1.2e-09 68.9 42 66.7
Glyma.08G172400 Glycine max HOM05D006918 ORTHO05D008525 1.2e-09 68.9 42 73.8
Glyma.15G254900 Glycine max HOM05D006918 ORTHO05D008525 1.2e-09 68.9 42 73.8
MD10G1198700 Malus domestica HOM05D006918 ORTHO05D008525 1.2e-09 68.9 41 75.6
Prupe.4G143000 Prunus persica HOM05D006918 ORTHO05D008525 1.2e-09 68.9 41 75.6
Lalb_Chr25g0285091 Lupinus albus HOM05D006918 ORTHO05D008525 2.7e-09 67.8 39 74.4
Medtr2g069680 Medicago truncatula HOM05D006918 ORTHO05D008525 2.7e-09 67.8 44 68.2
Solyc07g066390.1 Solanum lycopersicum HOM05D006918 ORTHO05D008525 2.7e-09 67.8 41 73.2
Sopen07g034560 Solanum pennellii HOM05D006918 ORTHO05D008525 2.7e-09 67.8 41 73.2
PGSC0003DMG400022129 Solanum tuberosum HOM05D006918 ORTHO05D008525 2.7e-09 67.8 41 73.2
SGA_v2.0_scaffold7G03576 Striga asiatica HOM05D006918 ORTHO05D008525 2.7e-09 67.8 41 75.6
Phvul.005G056300 Phaseolus vulgaris HOM05D006918 ORTHO05D008525 3.5e-09 67.4 42 69.0
VMungo1080G0996 Vigna mungo HOM05D006918 ORTHO05D008525 3.5e-09 67.4 42 69.0
MSTRG.7057 Avicennia marina HOM05D006918 ORTHO05D008525 4.5e-09 67.0 38 76.3
Lalb_Chr01g0007081 Lupinus albus HOM05D006918 ORTHO05D008525 4.5e-09 67.0 42 71.4
MD05G1216400 Malus domestica HOM05D006918 ORTHO05D008525 4.5e-09 67.0 42 71.4
TPR.G9735 Trifolium pratense HOM05D006918 ORTHO05D008525 4.5e-09 67.0 42 66.7
Lalb_Chr19g0133401 Lupinus albus HOM05D006918 ORTHO05D008525 5.9e-09 66.6 42 69.0
CAN.G943.32 Capsicum annuum HOM05D006918 ORTHO05D008525 7.7e-09 66.2 41 73.2
Gohir.D05G330400 Gossypium hirsutum HOM05D006918 ORTHO05D008525 7.7e-09 66.2 43 60.5
Gorai.009G354800 Gossypium raimondii HOM05D006918 ORTHO05D008525 7.7e-09 66.2 43 60.5
Manes.14G015600 Manihot esculenta HOM05D006918 ORTHO05D008525 1.0e-08 65.9 43 60.5
Eucgr.F03183 Eucalyptus grandis HOM05D006918 ORTHO05D008525 1.7e-08 65.1 42 61.9
Lj5C202T5 Lonicera japonica HOM05D006918 ORTHO05D008525 2.3e-08 64.7 43 62.8
QL04p074473 Quercus lobata HOM05D006918 ORTHO05D008525 2.9e-08 64.3 43 65.1
Sed0019951 Sechium edule HOM05D006918 ORTHO05D008525 2.9e-08 64.3 43 65.1
Psat1g002800 Pisum sativum HOM05D006918 ORTHO05D008525 3.8e-08 63.9 44 63.6
ClCG11G016340 Citrullus lanatus HOM05D006918 ORTHO05D008525 5.0e-08 63.5 43 62.8
RcHm_v2.0_Chr5g0026921 Rosa chinensis HOM05D006918 ORTHO05D008525 6.5e-08 63.2 41 68.3
CANSAT56G0998 Cannabis sativa HOM05D006918 ORTHO05D008525 1.1e-07 62.4 42 66.7
Ah.04g163440 Amaranthus hybridus HOM05D006918 ORTHO05D008525 1.5e-07 62.0 36 72.2
Duzib187G0932 Durio zibethinus HOM05D006918 ORTHO05D008525 1.5e-07 62.0 42 59.5
Duzib187G1351 Durio zibethinus HOM05D006918 ORTHO05D008525 1.5e-07 62.0 42 59.5
CsaV3_4G031810 Cucumis sativus L. HOM05D006918 ORTHO05D008525 1.9e-07 61.6 42 61.9
FAN21G2086 Fragaria x ananassa HOM05D006918 ORTHO05D008525 1.9e-07 61.6 40 67.5
FAN21G2559 Fragaria x ananassa HOM05D006918 ORTHO05D008525 1.9e-07 61.6 40 67.5
TWI39G1081 Tripterygium wilfordii HOM05D006918 ORTHO05D008525 1.9e-07 61.6 36 66.7
FvH4_3g15990 Fragaria vesca HOM05D006918 ORTHO05D008525 2.5e-07 61.2 40 67.5
FAN11G3197 Fragaria x ananassa HOM05D006918 ORTHO05D008525 2.5e-07 61.2 40 67.5
EL10Ac4g08564 Beta vulgaris HOM05D006918 ORTHO05D008525 4.2e-07 60.5 36 69.4
AUR62043059 Chenopodium quinoa HOM05D006918 ORTHO05D008525 4.2e-07 60.5 36 69.4
AUR62044624 Chenopodium quinoa HOM05D006918 ORTHO05D008525 4.2e-07 60.5 36 69.4
AL2G39540 Arabidopsis lyrata HOM05D006918 ORTHO05D008525 5.5e-07 60.1 44 54.5
AT1G79080 Arabidopsis thaliana HOM05D006918 ORTHO05D008525 5.5e-07 60.1 44 54.5
Ciclev10019503m.g Citrus clementina HOM05D006918 ORTHO05D008525 5.5e-07 60.1 38 65.8
TPR.G9740 Trifolium pratense HOM05D006918 ORTHO05D008525 5.5e-07 60.1 38 63.2
CARHR072750 Cardamine hirsuta HOM05D006918 ORTHO05D008525 9.5e-07 59.3 43 55.8
MELO3C010560.2 Cucumis melo HOM05D006918 ORTHO05D008525 9.5e-07 59.3 42 59.5
Thhalv10018334m.g Eutrema salsugineum HOM05D006918 ORTHO05D008525 9.5e-07 59.3 44 54.5
FAN25G3485 Fragaria x ananassa HOM05D006918 ORTHO05D008525 9.5e-07 59.3 41 63.4
PGR031G3805 Punica granatum HOM05D006918 ORTHO05D008525 9.5e-07 59.3 45 64.4
Sp5g34130 Schrenkiella parvula HOM05D006918 ORTHO05D008525 9.5e-07 59.3 44 56.8
BcaB02g08665 Brassica carinata HOM05D006918 ORTHO05D008525 1.2e-06 58.9 44 52.3
BcaNung04908 Brassica carinata HOM05D006918 ORTHO05D008525 1.2e-06 58.9 44 52.3
Lj5A202T40 Lonicera japonica HOM05D006918 ORTHO05D008525 1.2e-06 58.9 44 56.8
TWI38G1170 Tripterygium wilfordii HOM05D006918 ORTHO05D008525 1.2e-06 58.9 38 60.5
Rhsim04G0005900 Rhododendron simsii HOM05D006918 ORTHO05D008525 1.6e-06 58.5 42 57.1
Aa31LG4G1910 Aethionema arabicum HOM05D001696 ORTHO05D001746 2.8e-06 57.8 44 50.0
Carub.0002s2595 Capsella rubella HOM05D006918 ORTHO05D008525 6.1e-06 56.6 43 51.2


User provided reference genes

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