Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1096G084 Amborella trichopoda HOM05D002649 ORTHO05D026545 6.8e-103 377.5 212 100.0
ATR1096G047 Amborella trichopoda HOM05D002649 ORTHO05D002838 1.2e-96 356.7 212 89.2
ATR1096G152 Amborella trichopoda HOM05D002649 ORTHO05D026545 3.1e-95 352.1 212 95.8
MBI13_g09220_MAGBIO Magnolia biondii HOM05D002649 ORTHO05D002838 4.4e-33 145.6 217 44.2
Prupe.7G034000 Prunus persica HOM05D002649 ORTHO05D002838 2.0e-25 120.2 217 39.2
Potri.016G036100 Populus trichocarpa HOM05D002649 ORTHO05D002838 3.4e-25 119.4 213 39.0
TAR633G1656 Trochodendron aralioides HOM05D002649 ORTHO05D002838 5.7e-25 118.6 218 39.9
Manes.09G004200 Manihot esculenta HOM05D002649 ORTHO05D002838 2.8e-24 116.3 218 38.5
QL07p011045 Quercus lobata HOM05D002649 ORTHO05D002838 3.7e-24 115.9 221 37.6
MBI19_g24367_MAGBIO Magnolia biondii HOM05D002649 ORTHO05D002838 2.4e-23 113.2 222 36.5
Nn2g14676 Nelumbo nucifera HOM05D002649 ORTHO05D002838 3.1e-23 112.8 228 39.0
MD14G1090300 Malus domestica HOM05D002649 ORTHO05D002838 4.1e-23 112.5 217 39.6
CiPaw.09G048400 Carya illinoinensis HOM05D002649 ORTHO05D002838 5.4e-23 112.1 219 36.5
Sabra06G0026700 Salix brachista HOM05D002649 ORTHO05D002838 1.2e-22 110.9 217 35.5
Sabra16G0038200 Salix brachista HOM05D002649 ORTHO05D002838 1.2e-22 110.9 225 35.6
Potri.006G039600 Populus trichocarpa HOM05D002649 ORTHO05D002838 2.0e-22 110.2 219 36.5
CSS0012260 Camellia sinensis var. sinensis HOM05D002649 ORTHO05D002838 2.7e-22 109.8 223 39.5
RcHm_v2.0_Chr2g0125771 Rosa chinensis HOM05D002649 ORTHO05D002838 2.7e-22 109.8 223 36.3
CSS0023965 Camellia sinensis var. sinensis HOM05D002649 ORTHO05D002838 7.7e-22 108.2 222 36.9
MD12G1096000 Malus domestica HOM05D002649 ORTHO05D002838 1.7e-21 107.1 217 32.7
Cfa019999 Carpinus fangiana HOM05D002649 ORTHO05D002838 2.2e-21 106.7 221 35.3
FAN02G2210 Fragaria x ananassa HOM05D002649 ORTHO05D002838 2.2e-21 106.7 221 35.7
Haze_20234 Corylus avellana HOM05D002649 ORTHO05D002838 3.8e-21 105.9 221 36.2
FAN09G3502 Fragaria x ananassa HOM05D002649 ORTHO05D002838 6.5e-21 105.1 219 36.5
Dinv05299 Davidia involucrata HOM05D002649 ORTHO05D002838 1.1e-20 104.4 221 34.4
FvH4_6g25350 Fragaria vesca HOM05D002649 ORTHO05D002838 1.9e-20 103.6 222 36.0
CANSAT80G1279 Cannabis sativa HOM05D002649 ORTHO05D002838 4.2e-20 102.4 216 35.2
Dinv12024 Davidia involucrata HOM05D002649 ORTHO05D002838 4.2e-20 102.4 221 34.4
Actinidia17956 Actinidia chinensis HOM05D002649 ORTHO05D002838 7.2e-20 101.7 212 35.8
Nn7g36807 Nelumbo nucifera HOM05D002649 ORTHO05D002838 1.2e-19 100.9 227 44.9
Atru.chr1.1414 Acer truncatum HOM05D002649 ORTHO05D002838 2.1e-19 100.1 215 34.0
TAR636G0690 Trochodendron aralioides HOM05D002649 ORTHO05D002838 3.6e-19 99.4 218 36.7
Dinv07945 Davidia involucrata HOM05D004542 ORTHO05D005380 1.0e-18 97.8 221 33.5
GSVIVG01033642001 Vitis vinifera HOM05D002649 ORTHO05D002838 1.0e-18 97.8 212 31.6
Hma1.2p1_0866F.1_g230110 Hydrangea macrophylla HOM05D002649 ORTHO05D002838 1.4e-18 97.4 220 31.8
Lj2C400G16 Lonicera japonica HOM05D002649 ORTHO05D002838 1.4e-18 97.4 223 33.6
Psat3g079200 Pisum sativum HOM05D002649 ORTHO05D002838 1.4e-18 97.4 218 45.0
Ciclev10011296m.g Citrus clementina HOM05D002649 ORTHO05D002838 2.3e-18 96.7 220 35.0
Cc06_g19490 Coffea canephora HOM05D002649 ORTHO05D002838 2.3e-18 96.7 229 34.9
Lalb_Chr22g0357481 Lupinus albus HOM05D002649 ORTHO05D002838 2.3e-18 96.7 227 36.1
Atru.chr1.1431 Acer truncatum HOM05D002649 ORTHO05D002838 4.0e-18 95.9 215 32.6
CsaV3_3G040120 Cucumis sativus L. HOM05D002649 ORTHO05D002838 8.8e-18 94.7 218 33.9
SabraUnG0002300 Salix brachista HOM05D002649 ORTHO05D002838 1.2e-17 94.4 158 39.2
Duzib128G1639 Durio zibethinus HOM05D002649 ORTHO05D002838 2.6e-17 93.2 217 31.8
TWI77G0773 Tripterygium wilfordii HOM05D002649 ORTHO05D002838 7.5e-17 91.7 219 35.6
Gohir.A01G192550 Gossypium hirsutum HOM05D002649 ORTHO05D002838 9.8e-17 91.3 213 31.0
Oeu063784.1 Olea europaea HOM05D002649 ORTHO05D002838 9.8e-17 91.3 162 40.1
Gohir.D01G177300 Gossypium hirsutum HOM05D002649 ORTHO05D002838 1.3e-16 90.9 212 30.7
Thecc.05G129000 Theobroma cacao HOM05D002649 ORTHO05D002838 2.2e-16 90.1 220 32.3
Lj1g0021341 Lotus japonicus HOM05D002649 ORTHO05D002838 3.7e-16 89.4 215 34.9
Lalb_Chr14g0365771 Lupinus albus HOM05D002649 ORTHO05D002838 3.7e-16 89.4 215 34.9
Gorai.002G225900 Gossypium raimondii HOM05D002649 ORTHO05D002838 4.9e-16 89.0 213 30.0
TWI74G0896 Tripterygium wilfordii HOM05D002649 ORTHO05D002838 8.3e-16 88.2 221 36.2
Os01g0280400 Oryza sativa ssp. japonica HOM05D002649 ORTHO05D002838 1.4e-15 87.4 216 29.6
TPR.G34635 Trifolium pratense HOM05D002649 ORTHO05D002838 1.8e-15 87.0 158 41.8
Sed0008307 Sechium edule HOM05D002649 ORTHO05D002838 2.4e-15 86.7 217 32.3
Sed0013320 Sechium edule HOM05D002649 ORTHO05D002838 2.4e-15 86.7 218 33.0
MELO3C009752.2 Cucumis melo HOM05D002649 ORTHO05D002838 3.1e-15 86.3 218 31.2
Dinv32006 Davidia involucrata HOM05D002649 ORTHO05D002838 3.1e-15 86.3 213 33.8
TAR369G0504 Trochodendron aralioides HOM05D002649 ORTHO05D002838 3.1e-15 86.3 147 40.8
arahy.Tifrunner.gnm1.ann1.WN7Z3X Arachis hypogaea HOM05D002649 ORTHO05D002838 4.1e-15 85.9 226 31.0
Lalb_Chr18g0060251 Lupinus albus HOM05D002649 ORTHO05D002838 4.1e-15 85.9 214 41.1
PGR031G3173 Punica granatum HOM05D002649 ORTHO05D002838 4.1e-15 85.9 228 32.5
Aqoxy2G00422 Aquilegia oxysepala HOM05D002649 ORTHO05D002838 7.0e-15 85.1 160 37.5
Os12g0170100 Oryza sativa ssp. japonica HOM05D002649 ORTHO05D002838 9.2e-15 84.7 212 27.4
HPP92_012951 Vanilla planifolia HOM05D002649 ORTHO05D002838 9.2e-15 84.7 212 30.2
ClCG10G016270 Citrullus lanatus HOM05D002649 ORTHO05D002838 1.6e-14 84.0 218 33.0
QL04p021475 Quercus lobata HOM05D002649 ORTHO05D002838 1.6e-14 84.0 224 32.1
AUR62018354 Chenopodium quinoa HOM05D002649 ORTHO05D002838 2.0e-14 83.6 216 31.9
AUR62030308 Chenopodium quinoa HOM05D002649 ORTHO05D002838 2.0e-14 83.6 217 32.3
Manes.08G060500 Manihot esculenta HOM05D002649 ORTHO05D002838 2.0e-14 83.6 236 29.7
Carub.0002s2729 Capsella rubella HOM05D002649 ORTHO05D002838 3.5e-14 82.8 149 38.9
COL.COLO4_37452 Corchorus olitorius HOM05D002649 ORTHO05D002838 3.5e-14 82.8 174 35.1
SHI24525 Sapria himalayana HOM05D002649 ORTHO05D002838 3.5e-14 82.8 218 31.2
MSTRG.26162 Avicennia marina HOM05D002649 ORTHO05D002838 4.5e-14 82.4 224 31.7
MSTRG.6365 Avicennia marina HOM05D002649 ORTHO05D002838 4.5e-14 82.4 222 31.5
Eucgr.K01644 Eucalyptus grandis HOM05D002649 ORTHO05D002838 5.9e-14 82.0 223 33.2
Oeu022971.1 Olea europaea HOM05D002649 ORTHO05D002838 5.9e-14 82.0 161 38.5
QL11p045923 Quercus lobata HOM05D002649 ORTHO05D002838 7.7e-14 81.6 224 31.7
arahy.Tifrunner.gnm1.ann1.8RBA5F Arachis hypogaea HOM05D002649 ORTHO05D002838 1.0e-13 81.3 224 32.1
CAN.G448.3 Capsicum annuum HOM05D002649 ORTHO05D002838 1.0e-13 81.3 215 33.0
CsaV3_3G040080 Cucumis sativus L. HOM05D002649 ORTHO05D002838 1.0e-13 81.3 219 32.9
CDE04G1431 Ceratophyllum demersum HOM05D002649 ORTHO05D002838 1.3e-13 80.9 244 31.1
Sc19g0008130 Simmondsia chinensis HOM05D002649 ORTHO05D002838 1.3e-13 80.9 158 40.5
AL2G41230 Arabidopsis lyrata HOM05D002649 ORTHO05D002838 2.3e-13 80.1 173 35.8
Migut.J01647 Erythranthe guttata HOM05D002649 ORTHO05D002838 2.3e-13 80.1 217 30.9
HPP92_002485 Vanilla planifolia HOM05D002649 ORTHO05D002838 2.3e-13 80.1 215 31.2
COL.COLO4_21467 Corchorus olitorius HOM05D002649 ORTHO05D002838 2.9e-13 79.7 162 33.3
Glyma.19G129900 Glycine max HOM05D002649 ORTHO05D002838 2.9e-13 79.7 216 32.9
THA.LOC104808221 Tarenaya hassleriana HOM05D002649 ORTHO05D002838 2.9e-13 79.7 197 35.5
Duzib093G1638 Durio zibethinus HOM05D002649 ORTHO05D002838 3.8e-13 79.3 216 29.6
Hma1.2p1_0866F.1_g230120 Hydrangea macrophylla HOM05D002649 ORTHO05D002838 3.8e-13 79.3 149 36.2
Hma1.2p1_2429F.1_g322005 Hydrangea macrophylla HOM05D002649 ORTHO05D002838 3.8e-13 79.3 149 36.2
CsaV3_3G040090 Cucumis sativus L. HOM05D002649 ORTHO05D002838 5.0e-13 79.0 217 29.5
Sed0023036 Sechium edule HOM05D002649 ORTHO05D002838 6.6e-13 78.6 213 32.4
Lsat_1_v5_gn_9_29760 Lactuca sativa HOM05D002649 ORTHO05D002838 8.6e-13 78.2 214 38.8
CsaV3_3G040110 Cucumis sativus L. HOM05D002649 ORTHO05D002838 1.1e-12 77.8 222 32.0
Solyc12g020050.2 Solanum lycopersicum HOM05D002649 ORTHO05D002838 1.1e-12 77.8 225 31.1
Sed0005213 Sechium edule HOM05D002649 ORTHO05D002838 1.9e-12 77.0 222 28.8
CsaV3_3G040100 Cucumis sativus L. HOM05D002649 ORTHO05D002838 2.5e-12 76.6 218 30.3
Medtr7g089770 Medicago truncatula HOM05D002649 ORTHO05D002838 2.5e-12 76.6 223 32.3
EL10Ac3g07246 Beta vulgaris HOM05D002649 ORTHO05D002838 3.3e-12 76.3 219 35.6
Migut.K00140 Erythranthe guttata HOM05D002649 ORTHO05D002838 5.6e-12 75.5 223 30.0
Nitab4.5_0010685g0010 Nicotiana tabacum HOM05D002649 ORTHO05D002838 5.6e-12 75.5 213 37.1
SGA_v2.0_scaffold66G22261 Striga asiatica HOM05D002649 ORTHO05D002838 5.6e-12 75.5 217 29.5
Lj1g0025196 Lotus japonicus HOM05D002649 ORTHO05D002838 7.3e-12 75.1 221 31.7
AT1G80270 Arabidopsis thaliana HOM05D002649 ORTHO05D002838 1.6e-11 73.9 169 39.6
Ca_08387_v3 Cicer arietinum L. HOM05D002649 ORTHO05D002838 1.6e-11 73.9 223 33.6
Hma1.2p1_1342F.1_g276940 Hydrangea macrophylla HOM05D002649 ORTHO05D002838 1.6e-11 73.9 215 31.2
Peaxi162Scf00076g00413 Petunia axillaris HOM05D002649 ORTHO05D002838 1.6e-11 73.9 171 40.4
VMungo1383G1419 Vigna mungo HOM05D002649 ORTHO05D026545 1.6e-11 73.9 214 32.7
arahy.Tifrunner.gnm1.ann1.01ACP3 Arachis hypogaea HOM05D002649 ORTHO05D002838 2.1e-11 73.6 211 28.9
Sopen12g010730 Solanum pennellii HOM05D002649 ORTHO05D002838 2.1e-11 73.6 225 31.1
CARHR074220 Cardamine hirsuta HOM05D002649 ORTHO05D002838 2.8e-11 73.2 150 38.0
Sc13g0001100 Simmondsia chinensis HOM05D002649 ORTHO05D002838 2.8e-11 73.2 209 33.0
PGSC0003DMG400008773 Solanum tuberosum HOM05D002649 ORTHO05D002838 2.8e-11 73.2 215 31.2
C06p29070 Brassica napus HOM05D002649 ORTHO05D002838 4.7e-11 72.4 194 33.0
HanXRQChr01g0008131 Helianthus annuus HOM05D002649 ORTHO05D002838 6.1e-11 72.0 218 30.3
Lsat_1_v5_gn_5_157421 Lactuca sativa HOM05D002649 ORTHO05D002838 6.1e-11 72.0 215 28.8
BcaC08g45302 Brassica carinata HOM05D002649 ORTHO05D002838 8.0e-11 71.6 194 33.0
ClCG10G016260 Citrullus lanatus HOM05D002649 ORTHO05D002838 1.4e-10 70.9 201 30.3
Sp5g35540 Schrenkiella parvula HOM05D002649 ORTHO05D002838 1.8e-10 70.5 190 34.2
arahy.Tifrunner.gnm1.ann1.65M2C6 Arachis hypogaea HOM05D002649 ORTHO05D002838 2.3e-10 70.1 221 29.9
VMungo0720G1113 Vigna mungo HOM05D002649 ORTHO05D002838 2.3e-10 70.1 143 38.5
BcaB02g07283 Brassica carinata HOM05D002649 ORTHO05D002838 5.2e-10 68.9 185 37.8
CiPaw.14G009700 Carya illinoinensis HOM05D002649 ORTHO05D002838 5.2e-10 68.9 223 31.8
TPR.G7614 Trifolium pratense HOM05D002649 ORTHO05D002838 5.2e-10 68.9 214 30.4
Sabra16G0038500 Salix brachista HOM05D002649 ORTHO05D002838 6.8e-10 68.6 138 34.8
THA.LOC104812489 Tarenaya hassleriana HOM05D002649 ORTHO05D002838 6.8e-10 68.6 196 32.1
Cfa010953 Carpinus fangiana HOM05D002649 ORTHO05D002838 8.9e-10 68.2 218 30.3
Zm00001eb129090 Zea mays HOM05D002649 ORTHO05D002838 8.9e-10 68.2 212 26.4
Migut.K00139 Erythranthe guttata HOM05D002649 ORTHO05D002838 1.5e-09 67.4 220 29.5
Nitab4.5_0000323g0040 Nicotiana tabacum HOM05D002649 ORTHO05D002838 1.5e-09 67.4 145 44.1
VMungo0720G0528 Vigna mungo HOM05D002649 ORTHO05D002838 2.0e-09 67.0 143 37.8
Ah.13g076830 Amaranthus hybridus HOM05D002649 ORTHO05D002838 3.4e-09 66.2 221 32.6
Carub.0001s1527 Capsella rubella HOM05D002649 ORTHO05D002838 3.4e-09 66.2 140 36.4
Phvul.007G280400 Phaseolus vulgaris HOM05D002649 ORTHO05D002838 3.4e-09 66.2 220 31.4
Glyma.10G000600 Glycine max HOM05D002649 ORTHO05D002838 4.4e-09 65.9 220 33.6
Glyma.02G000600 Glycine max HOM05D002649 ORTHO05D002838 9.8e-09 64.7 216 34.7
Zm00001eb332580 Zea mays HOM05D002649 ORTHO05D002838 9.8e-09 64.7 221 25.3
Aa31LG4G550 Aethionema arabicum HOM05D002649 ORTHO05D002838 1.7e-08 63.9 139 35.3
arahy.Tifrunner.gnm1.ann1.B4V8RG Arachis hypogaea HOM05D002649 ORTHO05D002838 2.9e-08 63.2 164 31.1
MELO3C009748.2 Cucumis melo HOM05D002649 ORTHO05D002838 3.7e-08 62.8 212 27.8
C05p13640 Brassica napus HOM05D003006 ORTHO05D002838 6.4e-08 62.0 138 31.2
Haze_02991 Corylus avellana HOM05D002649 ORTHO05D002838 8.3e-08 61.6 218 29.8
Psat6g093520 Pisum sativum HOM05D002649 ORTHO05D002838 1.1e-07 61.2 219 35.6
THA.LOC104815543 Tarenaya hassleriana HOM05D002649 ORTHO05D002838 1.4e-07 60.8 202 26.2
BcaC05g25625 Brassica carinata HOM05D002649 ORTHO05D002838 1.8e-07 60.5 138 31.9
A06p11540 Brassica napus HOM05D003006 ORTHO05D002838 1.8e-07 60.5 138 31.9
Sp1g13840 Schrenkiella parvula HOM05D002649 ORTHO05D002838 1.8e-07 60.5 195 30.8
BolC5t30104H Brassica oleracea HOM05D002649 ORTHO05D002838 2.4e-07 60.1 138 31.9
Eucgr.A02234 Eucalyptus grandis HOM05D002649 ORTHO05D002838 5.4e-07 58.9 217 26.7
Sed0008774 Sechium edule HOM05D002649 ORTHO05D002838 7.0e-07 58.5 56 48.2
BraA06t24328Z Brassica rapa HOM05D003006 ORTHO05D003438 9.2e-07 58.2 63 47.6
CAN.G960.61 Capsicum annuum HOM05D002649 ORTHO05D002838 9.2e-07 58.2 227 27.8
Thhalv10007131m.g Eutrema salsugineum HOM05D002649 ORTHO05D002838 9.2e-07 58.2 145 34.5
TWI53G0353 Tripterygium wilfordii HOM05D002649 ORTHO05D002838 1.2e-06 57.8 215 28.4
MSTRG.19799 Avicennia marina HOM05D002649 ORTHO05D002838 1.6e-06 57.4 62 48.4
Ca_14436_v3 Cicer arietinum L. HOM05D002649 ORTHO05D002838 1.6e-06 57.4 166 30.7
ECA248G3593 Erigeron canadensis HOM05D002649 ORTHO05D002838 1.6e-06 57.4 159 30.8
MELO3C030717.2 Cucumis melo HOM05D002649 ORTHO05D002838 2.0e-06 57.0 68 42.6
ECA247G0229 Erigeron canadensis HOM05D002649 ORTHO05D002838 2.7e-06 56.6 70 41.4
AL1G27600 Arabidopsis lyrata HOM05D002649 ORTHO05D002838 4.6e-06 55.8 138 35.5
BcaC05g25497 Brassica carinata HOM05D002649 ORTHO05D002838 4.6e-06 55.8 143 47.6
Migut.M00483 Erythranthe guttata HOM05D002649 ORTHO05D026545 4.6e-06 55.8 146 31.5
Ca_11756_v3 Cicer arietinum L. HOM05D002649 ORTHO05D002838 5.9e-06 55.5 220 27.3
Migut.G01251 Erythranthe guttata HOM05D002649 ORTHO05D002838 7.8e-06 55.1 146 31.5


User provided reference genes

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