Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1091G111 Amborella trichopoda HOM05D004907 ORTHO05D005707 1.6e-216 755.7 370 100.0
TAR374G1110 Trochodendron aralioides HOM05D004907 ORTHO05D005707 1.7e-77 293.9 369 40.4
Nitab4.5_0015209g0010 Nicotiana tabacum HOM05D004907 ORTHO05D005707 1.7e-69 267.3 369 37.4
Nitab4.5_0000338g0040 Nicotiana tabacum HOM05D004907 ORTHO05D005707 8.6e-69 265.0 369 37.1
CAN.G728.4 Capsicum annuum HOM05D004907 ORTHO05D005707 4.7e-67 259.2 369 35.8
Rhsim12G0113900 Rhododendron simsii HOM05D004907 ORTHO05D005707 6.8e-66 255.4 375 39.5
Hma1.2p1_0160F.1_g071120 Hydrangea macrophylla HOM05D004907 ORTHO05D005707 8.9e-66 255.0 368 37.5
PGSC0003DMG400013488 Solanum tuberosum HOM05D004907 ORTHO05D005707 8.9e-66 255.0 369 36.3
PSO063G4965 Papaver somniferum HOM05D004907 ORTHO05D005707 4.4e-65 252.7 365 37.3
Nn4g22709 Nelumbo nucifera HOM05D004907 ORTHO05D005707 9.9e-65 251.5 368 38.0
MD16G1096400 Malus domestica HOM05D004907 ORTHO05D005707 1.3e-64 251.1 370 37.8
Cfa009182 Carpinus fangiana HOM05D004907 ORTHO05D005707 2.2e-64 250.4 362 39.0
Lj6P808T27 Lonicera japonica HOM05D004907 ORTHO05D005707 2.2e-64 250.4 369 37.4
PSO782G1891 Papaver somniferum HOM05D004907 ORTHO05D005707 2.2e-64 250.4 370 38.6
Sopen05g001160 Solanum pennellii HOM05D004907 ORTHO05D005707 4.9e-64 249.2 360 36.9
Ciclev10031561m.g Citrus clementina HOM05D004907 ORTHO05D005707 6.4e-64 248.8 372 39.0
Haze_12215 Corylus avellana HOM05D004907 ORTHO05D005707 8.4e-64 248.4 361 37.4
Lsat_1_v5_gn_3_28580 Lactuca sativa HOM05D004907 ORTHO05D005707 8.4e-64 248.4 363 39.1
CSS0001528 Camellia sinensis var. sinensis HOM05D004907 ORTHO05D005707 1.4e-63 247.7 360 38.6
Aqoxy3G02876 Aquilegia oxysepala HOM05D004907 ORTHO05D005707 7.1e-63 245.4 369 36.0
Solyc05g005150.1 Solanum lycopersicum HOM05D004907 ORTHO05D005707 1.6e-62 244.2 360 36.7
Cfa009181 Carpinus fangiana HOM05D004907 ORTHO05D005707 2.7e-62 243.4 363 35.8
PSO170G6868 Papaver somniferum HOM05D004907 ORTHO05D005707 2.7e-62 243.4 372 36.3
PSO441G0001 Papaver somniferum HOM05D004907 ORTHO05D005707 2.7e-62 243.4 372 36.3
PSO144G0054 Papaver somniferum HOM05D004907 ORTHO05D005707 4.6e-62 242.7 374 36.9
Prupe.1G249900 Prunus persica HOM05D004907 ORTHO05D005707 4.6e-62 242.7 372 36.6
PSO170G1656 Papaver somniferum HOM05D004907 ORTHO05D005707 2.3e-61 240.4 370 37.6
MD13G1095300 Malus domestica HOM05D004907 ORTHO05D005707 3.9e-61 239.6 372 36.3
Lsat_1_v5_gn_8_154601 Lactuca sativa HOM05D004907 ORTHO05D005707 5.1e-61 239.2 357 36.7
Thecc.02G254700 Theobroma cacao HOM05D004907 ORTHO05D005707 6.6e-61 238.8 363 36.9
Cc11_g15390 Coffea canephora HOM05D004907 ORTHO05D005707 1.5e-60 237.7 376 35.9
QL03p059196 Quercus lobata HOM05D004907 ORTHO05D005707 1.5e-60 237.7 365 36.7
Rhsim12G0042700 Rhododendron simsii HOM05D004907 ORTHO05D005707 1.5e-60 237.7 367 36.2
Duzib268G1138 Durio zibethinus HOM05D004907 ORTHO05D005707 4.3e-60 236.1 364 36.0
ClCG05G025500 Citrullus lanatus HOM05D004907 ORTHO05D005707 5.6e-60 235.7 362 37.6
MD16G1096500 Malus domestica HOM05D004907 ORTHO05D005707 5.6e-60 235.7 365 35.9
Hma1.2p1_0223F.1_g094330 Hydrangea macrophylla HOM05D004907 ORTHO05D005707 9.6e-60 235.0 360 35.8
CANSAT01G1025 Cannabis sativa HOM05D004907 ORTHO05D005707 1.2e-59 234.6 364 37.9
CiPaw.05G186900 Carya illinoinensis HOM05D004907 ORTHO05D005707 2.1e-59 233.8 365 37.0
Gohir.D01G149900 Gossypium hirsutum HOM05D004907 ORTHO05D005707 2.8e-59 233.4 363 36.4
HanXRQChr06g0173591 Helianthus annuus HOM05D004907 ORTHO05D005707 2.8e-59 233.4 376 37.2
DCAR_007072 Daucus carota HOM05D004907 ORTHO05D005707 4.7e-59 232.6 373 37.8
Gorai.002G186000 Gossypium raimondii HOM05D004907 ORTHO05D005707 8.1e-59 231.9 363 36.4
Lj4g0000696 Lotus japonicus HOM05D004907 ORTHO05D005707 2.4e-58 230.3 368 36.7
Sc04g0009300 Simmondsia chinensis HOM05D004907 ORTHO05D005707 3.1e-58 229.9 362 38.1
CiPaw.06G069900 Carya illinoinensis HOM05D004907 ORTHO05D005707 6.8e-58 228.8 363 35.5
Gohir.D02G160600 Gossypium hirsutum HOM05D004907 ORTHO05D005707 1.5e-57 227.6 367 36.8
RcHm_v2.0_Chr4g0441991 Rosa chinensis HOM05D004907 ORTHO05D005707 4.4e-57 226.1 371 33.2
Duzib268G1696 Durio zibethinus HOM05D004907 ORTHO05D005707 7.6e-57 225.3 357 35.3
MSTRG.7910 Avicennia marina HOM05D004907 ORTHO05D005707 1.3e-56 224.6 365 37.3
FAN12G3344 Fragaria x ananassa HOM05D004907 ORTHO05D005707 1.7e-56 224.2 375 35.2
Psat5g210760 Pisum sativum HOM05D004907 ORTHO05D005707 2.9e-56 223.4 333 37.5
FvH4_4g32970 Fragaria vesca HOM05D004907 ORTHO05D005707 4.9e-56 222.6 375 34.9
Manes.13G027600 Manihot esculenta HOM05D004907 ORTHO05D005707 4.9e-56 222.6 362 34.5
PGR119G0630 Punica granatum HOM05D004907 ORTHO05D005707 6.4e-56 222.2 357 35.9
PGR102G3060 Punica granatum HOM05D004907 ORTHO05D005707 8.4e-56 221.9 370 36.8
Oeu001729.1 Olea europaea HOM05D004907 ORTHO05D005707 1.1e-55 221.5 362 34.3
Atru.chr11.2072 Acer truncatum HOM05D004907 ORTHO05D005707 2.4e-55 220.3 325 40.3
Migut.L01466 Erythranthe guttata HOM05D004907 ORTHO05D005707 2.7e-54 216.9 370 37.6
FAN22G1867 Fragaria x ananassa HOM05D004907 ORTHO05D005707 1.0e-53 214.9 373 33.8
Gohir.A01G160100 Gossypium hirsutum HOM05D004907 ORTHO05D005707 1.0e-53 214.9 309 38.5
CsaV3_5G031400 Cucumis sativus L. HOM05D004907 ORTHO05D005707 2.3e-53 213.8 369 35.0
FAN17G0584 Fragaria x ananassa HOM05D004907 ORTHO05D005707 2.3e-53 213.8 370 34.3
VMungo1215G1811 Vigna mungo HOM05D004907 ORTHO05D005707 3.9e-53 213.0 340 37.6
FAN07G1203 Fragaria x ananassa HOM05D004907 ORTHO05D005707 5.1e-53 212.6 370 34.3
SalBow2G1155 Salvia bowleyana HOM05D004907 ORTHO05D005707 5.1e-53 212.6 361 36.0
Glyma.01G028800 Glycine max HOM05D004907 ORTHO05D005707 6.6e-53 212.2 338 36.1
Glyma.02G036400 Glycine max HOM05D004907 ORTHO05D005707 6.6e-53 212.2 331 37.8
CDE06G1150 Ceratophyllum demersum HOM05D004907 ORTHO05D005707 1.1e-52 211.5 324 34.0
MELO3C011980.2 Cucumis melo HOM05D004907 ORTHO05D005707 1.5e-52 211.1 370 35.1
Gohir.A05G313700 Gossypium hirsutum HOM05D004907 ORTHO05D005707 1.9e-52 210.7 361 33.5
Glyma.08G284600 Glycine max HOM05D004907 ORTHO05D005707 4.3e-52 209.5 375 33.9
Potri.010G042900 Populus trichocarpa HOM05D004907 ORTHO05D005707 9.6e-52 208.4 405 33.6
AUR62014077 Chenopodium quinoa HOM05D004907 ORTHO05D005707 1.3e-51 208.0 363 33.3
Gohir.A03G137500 Gossypium hirsutum HOM05D004907 ORTHO05D005707 1.3e-51 208.0 367 35.1
TPR.G24774 Trifolium pratense HOM05D004907 ORTHO05D005707 4.8e-51 206.1 369 33.6
Actinidia27794 Actinidia chinensis HOM05D004907 ORTHO05D005707 1.1e-50 204.9 369 33.9
AUR62005416 Chenopodium quinoa HOM05D004907 ORTHO05D005707 2.4e-50 203.8 359 33.4
Gorai.005G180700 Gossypium raimondii HOM05D004907 ORTHO05D005707 4.0e-50 203.0 367 34.3
Haze_12216 Corylus avellana HOM05D004907 ORTHO05D005707 5.3e-50 202.6 360 33.3
Lalb_Chr05g0216711 Lupinus albus HOM05D004907 ORTHO05D005707 1.5e-49 201.1 331 34.1
MSTRG.2405 Avicennia marina HOM05D004907 ORTHO05D005707 2.0e-49 200.7 354 35.3
Gorai.009G337200 Gossypium raimondii HOM05D004907 ORTHO05D005707 4.4e-49 199.5 361 33.5
TWI36G0219 Tripterygium wilfordii HOM05D004907 ORTHO05D005707 5.8e-49 199.1 371 34.2
SalBow3G2985 Salvia bowleyana HOM05D004907 ORTHO05D005707 8.4e-48 195.3 370 34.1
Phvul.003G062300 Phaseolus vulgaris HOM05D004907 ORTHO05D005707 1.4e-47 194.5 369 32.2
Ca_03137_v3 Cicer arietinum L. HOM05D004907 ORTHO05D005707 1.9e-47 194.1 374 32.4
Lj2g0022644 Lotus japonicus HOM05D004907 ORTHO05D005707 1.9e-47 194.1 366 33.1
Medtr8g069800 Medicago truncatula HOM05D004907 ORTHO05D005707 1.9e-47 194.1 364 31.6
Aa31LG7G7420 Aethionema arabicum HOM05D004907 ORTHO05D005707 2.4e-47 193.7 375 32.8
Psat2g106360 Pisum sativum HOM05D004907 ORTHO05D005707 2.4e-47 193.7 365 33.7
Dinv15270 Davidia involucrata HOM05D004907 ORTHO05D005707 3.2e-47 193.4 256 38.7
Sabra10G0024600 Salix brachista HOM05D004907 ORTHO05D005707 3.2e-47 193.4 402 31.8
Glyma.18G141000 Glycine max HOM05D004907 ORTHO05D005707 2.1e-46 190.7 372 32.0
Eucgr.H02548 Eucalyptus grandis HOM05D004907 ORTHO05D005707 3.5e-46 189.9 368 32.6
THA.LOC104822976 Tarenaya hassleriana HOM05D004907 ORTHO05D005707 3.5e-46 189.9 320 36.2
Medtr5g033880 Medicago truncatula HOM05D004907 ORTHO05D005707 6.0e-46 189.1 368 32.6
C05p22690 Brassica napus HOM05D004907 ORTHO05D005707 1.0e-45 188.3 375 31.7
BolC5t30967H Brassica oleracea HOM05D004907 ORTHO05D005707 1.0e-45 188.3 375 31.7
BraA09t39619Z Brassica rapa HOM05D004907 ORTHO05D005707 1.0e-45 188.3 376 32.4
A09p41240 Brassica napus HOM05D004907 ORTHO05D005707 1.3e-45 188.0 374 32.6
Eucgr.H02549 Eucalyptus grandis HOM05D004907 ORTHO05D005707 2.3e-45 187.2 367 31.9
Ah.03g132850 Amaranthus hybridus HOM05D000168 ORTHO05D000811 8.7e-45 185.3 337 33.2
BcaC05g26256 Brassica carinata HOM05D004907 ORTHO05D005707 8.7e-45 185.3 365 32.1
Phvul.002G064500 Phaseolus vulgaris HOM05D004907 ORTHO05D005707 8.7e-45 185.3 261 37.9
Medtr5g043750 Medicago truncatula HOM05D004907 ORTHO05D005707 4.3e-44 183.0 374 31.0
GSVIVG01013786001 Vitis vinifera HOM05D004907 ORTHO05D005707 7.4e-44 182.2 265 35.1
BcaB07g32334 Brassica carinata HOM05D004907 ORTHO05D005707 1.3e-43 181.4 376 32.2
Thecc.02G254800 Theobroma cacao HOM05D004907 ORTHO05D005707 1.6e-43 181.0 364 31.0
SGA_v2.0_scaffold63G21708 Striga asiatica HOM05D004907 ORTHO05D005707 3.6e-43 179.9 367 31.3
Oeu055460.1 Olea europaea HOM05D004907 ORTHO05D005707 6.2e-43 179.1 368 34.0
Thhalv10007835m.g Eutrema salsugineum HOM05D004907 ORTHO05D005707 1.8e-42 177.6 377 30.2
Peaxi162Scf00158g00003 Petunia axillaris HOM05D004907 ORTHO05D005707 3.1e-42 176.8 266 32.0
Carub.0001s2297 Capsella rubella HOM05D004907 ORTHO05D005707 6.9e-42 175.6 374 31.8
PSO357G0455 Papaver somniferum HOM05D004907 ORTHO05D005707 6.9e-42 175.6 229 40.6
CARHR023830 Cardamine hirsuta HOM05D004907 ORTHO05D005707 2.6e-41 173.7 373 31.6
Sed0025966 Sechium edule HOM05D002061 ORTHO05D005707 3.4e-41 173.3 367 33.0
Oeu056415.1 Olea europaea HOM05D004907 ORTHO05D005707 7.6e-41 172.2 369 28.5
Oeu056417.1 Olea europaea HOM05D004907 ORTHO05D005707 7.6e-41 172.2 368 30.2
AT1G23390 Arabidopsis thaliana HOM05D004907 ORTHO05D005707 2.2e-40 170.6 378 30.7
AL1G37180 Arabidopsis lyrata HOM05D004907 ORTHO05D005707 2.9e-40 170.2 381 31.8
Sp1g20830 Schrenkiella parvula HOM05D004907 ORTHO05D005707 4.9e-40 169.5 331 32.0
Sed0027759 Sechium edule HOM05D004907 ORTHO05D005707 2.4e-39 167.2 371 31.3
Gohir.D05G315200 Gossypium hirsutum HOM05D004907 ORTHO05D005707 2.1e-38 164.1 216 41.2
COL.COLO4_24215 Corchorus olitorius HOM05D004907 ORTHO05D005707 1.0e-37 161.8 258 34.9
PSO478G2945 Papaver somniferum HOM05D004907 ORTHO05D005707 6.7e-37 159.1 179 45.8
Hund25371 Selenicereus undatus HOM05D004907 ORTHO05D005707 8.7e-37 158.7 363 29.2
Oeu056728.1 Olea europaea HOM05D004907 ORTHO05D005707 5.6e-36 156.0 286 32.5
Actinidia08149 Actinidia chinensis HOM05D004907 ORTHO05D005707 4.8e-35 152.9 272 34.2
ClCG08G017860 Citrullus lanatus HOM05D002061 ORTHO05D005707 1.1e-34 151.8 348 34.2
Mapoly0119s0024 Marchantia polymorpha HOM05D007853 ORTHO05D009873 4.2e-31 139.8 368 29.9
Nn3g16812 Nelumbo nucifera HOM05D004907 ORTHO05D005707 1.2e-30 138.3 202 41.6
EL10Ac6g13709 Beta vulgaris HOM05D004907 ORTHO05D005707 4.3e-28 129.8 216 31.0
Mapoly0119s0021 Marchantia polymorpha HOM05D007853 ORTHO05D009873 1.8e-26 124.4 280 29.3
BcaB06g26693 Brassica carinata HOM05D007853 ORTHO05D009873 4.1e-26 123.2 322 28.3
Lalb_Chr09g0326261 Lupinus albus HOM05D004907 ORTHO05D005707 1.2e-25 121.7 328 26.5
SEGI_08843 Sequoiadendron giganteum HOM05D007853 ORTHO05D009873 1.2e-25 121.7 220 33.2
BcaC06g35750 Brassica carinata HOM05D007853 ORTHO05D009873 1.3e-24 118.2 375 26.9
BolC7t41605H Brassica oleracea HOM05D007853 ORTHO05D009873 1.3e-24 118.2 375 26.9
A07p07510 Brassica napus HOM05D007853 ORTHO05D009873 1.7e-24 117.9 375 26.4
BraA07t28542Z Brassica rapa HOM05D007853 ORTHO05D009873 1.7e-24 117.9 375 26.4
vmacro14766 Vaccinium macrocarpon HOM05D007853 ORTHO05D009873 6.5e-24 115.9 327 27.2
C07p11280 Brassica napus HOM05D007853 ORTHO05D009873 1.4e-23 114.8 375 25.9
Cfa002555 Carpinus fangiana HOM05D007853 ORTHO05D009873 4.2e-23 113.2 377 26.5
CDE01G0405 Ceratophyllum demersum HOM05D007853 ORTHO05D009873 4.2e-23 113.2 317 29.7
CiPaw.03G151300 Carya illinoinensis HOM05D007853 ORTHO05D009873 9.3e-23 112.1 376 27.1
Pp3c2_14180 Physcomitrium patens HOM05D007853 ORTHO05D009873 9.3e-23 112.1 376 25.0
Aa31LG8G11920 Aethionema arabicum HOM05D007853 ORTHO05D009873 1.6e-22 111.3 377 26.3
Thecc.01G228200 Theobroma cacao HOM05D007853 ORTHO05D009873 2.1e-22 110.9 367 27.2
TPR.G15291 Trifolium pratense HOM05D007853 ORTHO05D009873 2.1e-22 110.9 321 28.0
Hma1.2p1_1061F.1_g253350 Hydrangea macrophylla HOM05D007853 ORTHO05D009873 3.5e-22 110.2 327 29.4
Oeu015462.1 Olea europaea HOM05D007853 ORTHO05D009873 3.5e-22 110.2 316 26.6
AL3G40490 Arabidopsis lyrata HOM05D007853 ORTHO05D009873 4.6e-22 109.8 381 24.4
CiPaw.04G106700 Carya illinoinensis HOM05D007853 ORTHO05D009873 7.9e-22 109.0 376 25.8
Carub.0003s2515 Capsella rubella HOM05D007853 ORTHO05D009873 1.0e-21 108.6 382 24.6
HPP92_008048 Vanilla planifolia HOM05D004907 ORTHO05D005707 1.3e-21 108.2 323 26.6
TWI18G0437 Tripterygium wilfordii HOM05D007853 ORTHO05D009873 1.8e-21 107.8 321 28.3
AT3G24760 Arabidopsis thaliana HOM05D007853 ORTHO05D009873 6.7e-21 105.9 322 26.1
Duzib133G0551 Durio zibethinus HOM05D007853 ORTHO05D009873 6.7e-21 105.9 314 29.3
Lj1C83T5 Lonicera japonica HOM05D007853 ORTHO05D009873 3.3e-20 103.6 312 28.2
Phvul.008G123400 Phaseolus vulgaris HOM05D007853 ORTHO05D009873 1.3e-19 101.7 379 24.5
HanXRQChr01g0014671 Helianthus annuus HOM05D007853 ORTHO05D009873 1.6e-19 101.3 332 24.1
Manes.12G041900 Manihot esculenta HOM05D007853 ORTHO05D009873 4.8e-19 99.8 328 27.7
COL.COLO4_24217 Corchorus olitorius HOM05D004907 ORTHO05D005707 8.2e-19 99.0 189 29.6
VMungo1383G0232 Vigna mungo HOM05D007853 ORTHO05D009873 1.4e-18 98.2 381 24.9
MD13G1280300 Malus domestica HOM05D004907 ORTHO05D005707 9.0e-18 95.5 192 29.2
Lsat_1_v5_gn_5_179800 Lactuca sativa HOM05D007853 ORTHO05D009873 1.2e-17 95.1 325 24.3
Lalb_Chr03g0041891 Lupinus albus HOM05D007853 ORTHO05D009873 1.2e-17 95.1 326 25.8
Glyma.18G173200 Glycine max HOM05D007853 ORTHO05D009873 1.5e-17 94.7 379 24.3
Glyma.08G356100 Glycine max HOM05D007853 ORTHO05D009873 2.6e-17 94.0 328 25.6
Zm00001eb155550 Zea mays HOM05D004907 ORTHO05D005707 2.6e-17 94.0 302 27.5
ClCG09G009130 Citrullus lanatus HOM05D007853 ORTHO05D009873 5.9e-17 92.8 320 26.6
Nn2g13938 Nelumbo nucifera HOM05D004907 ORTHO05D005707 4.3e-12 76.6 125 36.0
Cfa009183 Carpinus fangiana HOM05D004907 ORTHO05D005707 1.4e-10 71.6 115 34.8
unitig_8.g2924 Utricularia gibba HOM05D004907 ORTHO05D005707 1.8e-10 71.2 119 37.0
Pp3c19_15800 Physcomitrium patens HOM05D007753 ORTHO05D009385 1.1e-07 62.0 341 22.0
SEGI_31464 Sequoiadendron giganteum HOM05D004907 ORTHO05D005707 5.5e-07 59.7 85 35.3
Mapoly0186s0014 Marchantia polymorpha HOM05D004302 ORTHO05D004939 9.4e-07 58.9 353 22.4
TPR.G21504 Trifolium pratense HOM05D004907 ORTHO05D005707 9.4e-07 58.9 134 26.9
SEGI_08151 Sequoiadendron giganteum HOM05D002809 ORTHO05D009091 4.7e-06 56.6 288 23.6
Pp3c10_6350 Physcomitrium patens HOM05D007853 ORTHO05D009873 7.9e-06 55.8 119 30.3


User provided reference genes

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