Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1089G159 Amborella trichopoda HOM05D004012 ORTHO05D004752 4.1e-251 870.9 442 100.0
Nn5g27391 Nelumbo nucifera HOM05D004012 ORTHO05D004752 5.0e-164 581.6 438 68.0
TAR628G1247 Trochodendron aralioides HOM05D004012 ORTHO05D004752 2.7e-162 575.9 468 65.0
Aqoxy5G01862 Aquilegia oxysepala HOM05D004012 ORTHO05D004752 3.3e-160 568.9 438 67.1
Dinv19127 Davidia involucrata HOM05D004012 ORTHO05D004752 3.7e-159 565.5 441 66.9
CSS0025733 Camellia sinensis var. sinensis HOM05D004012 ORTHO05D004752 1.8e-158 563.1 436 67.2
Hma1.2p1_3052F.1_g332140 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 4.1e-158 562.0 439 65.6
Hma1.2p1_0513F.1_g169610 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 3.5e-157 558.9 439 65.4
MBI10_g20270_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 1.9e-155 553.1 438 66.0
AUR62000581 Chenopodium quinoa HOM05D004012 ORTHO05D004752 9.4e-155 550.8 438 66.2
Dinv26833 Davidia involucrata HOM05D004012 ORTHO05D004752 1.2e-154 550.4 444 65.1
AUR62006937 Chenopodium quinoa HOM05D004012 ORTHO05D004752 2.1e-154 549.7 438 66.2
Manes.13G154600 Manihot esculenta HOM05D004012 ORTHO05D004752 3.6e-154 548.9 438 64.4
Sc16g0009950 Simmondsia chinensis HOM05D004012 ORTHO05D004752 2.3e-153 546.2 438 64.4
FvH4_5g20280 Fragaria vesca HOM05D004012 ORTHO05D004752 5.2e-153 545.0 439 64.7
FAN04G0350 Fragaria x ananassa HOM05D004012 ORTHO05D004752 1.1e-152 543.9 439 64.5
FAN18G2241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 1.5e-152 543.5 439 64.5
FAN08G1522 Fragaria x ananassa HOM05D004012 ORTHO05D004752 3.3e-152 542.3 439 64.2
ECA238G2948 Erigeron canadensis HOM05D004012 ORTHO05D004752 4.4e-152 542.0 435 65.7
GSVIVG01000257001 Vitis vinifera HOM05D004012 ORTHO05D004752 4.4e-152 542.0 414 67.1
Prupe.5G058000 Prunus persica HOM05D004012 ORTHO05D004752 7.4e-152 541.2 439 65.6
Hund07194 Selenicereus undatus HOM05D004012 ORTHO05D004752 7.4e-152 541.2 438 65.3
HanXRQChr13g0402671 Helianthus annuus HOM05D004012 ORTHO05D004752 1.7e-151 540.0 422 65.4
CiPaw.15G186100 Carya illinoinensis HOM05D004012 ORTHO05D004752 2.2e-151 539.7 434 63.6
Lalb_Chr01g0020921 Lupinus albus HOM05D004012 ORTHO05D004752 3.7e-151 538.9 439 63.6
RcHm_v2.0_Chr7g0205341 Rosa chinensis HOM05D004012 ORTHO05D004752 6.3e-151 538.1 445 62.9
Lalb_Chr03g0037441 Lupinus albus HOM05D004012 ORTHO05D004752 1.8e-150 536.6 439 63.6
Sopen04g017040 Solanum pennellii HOM05D004012 ORTHO05D004752 5.3e-150 535.0 436 63.8
Atru.chr3.1437 Acer truncatum HOM05D004012 ORTHO05D004752 1.2e-149 533.9 433 64.4
MELO3C023211.2 Cucumis melo HOM05D004012 ORTHO05D004752 3.5e-149 532.3 439 63.1
Potri.017G122600 Populus trichocarpa HOM05D004012 ORTHO05D004752 3.5e-149 532.3 438 63.2
MSTRG.9397 Avicennia marina HOM05D004012 ORTHO05D004752 4.5e-149 531.9 438 63.7
CAN.G10.8 Capsicum annuum HOM05D004012 ORTHO05D004752 1.7e-148 530.0 436 63.5
CANSAT54G0087 Cannabis sativa HOM05D004012 ORTHO05D004752 6.5e-148 528.1 440 63.2
MD04G1052500 Malus domestica HOM05D004012 ORTHO05D004752 1.5e-147 526.9 444 64.2
Rhsim01G0147700 Rhododendron simsii HOM05D004012 ORTHO05D004752 1.5e-147 526.9 469 61.4
CsaV3_2G019600 Cucumis sativus L. HOM05D004012 ORTHO05D004752 1.9e-147 526.6 439 62.4
SalBow1G0131 Salvia bowleyana HOM05D004012 ORTHO05D004752 1.9e-147 526.6 438 63.5
MD06G1047700 Malus domestica HOM05D004012 ORTHO05D004752 5.5e-147 525.0 442 64.0
VMungo0720G3057 Vigna mungo HOM05D004012 ORTHO05D004752 7.2e-147 524.6 443 61.9
ClCG02G000230 Citrullus lanatus HOM05D004012 ORTHO05D004752 9.4e-147 524.2 450 61.1
Lj6g0017875 Lotus japonicus HOM05D004012 ORTHO05D004752 1.6e-146 523.5 443 60.5
Mapoly0005s0018 Marchantia polymorpha HOM05D004012 ORTHO05D004752 1.6e-146 523.5 437 61.6
CDE05G2224 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 6.1e-146 521.5 439 63.1
Gohir.D10G106700 Gossypium hirsutum HOM05D004012 ORTHO05D004752 1.4e-145 520.4 445 61.6
Gorai.011G116800 Gossypium raimondii HOM05D004012 ORTHO05D004752 1.4e-145 520.4 445 61.6
Lalb_Chr19g0127941 Lupinus albus HOM05D004012 ORTHO05D004752 2.3e-145 519.6 439 61.5
Glyma.02G005000 Glycine max HOM05D004012 ORTHO05D004752 3.0e-145 519.2 443 60.9
Gohir.A10G084900 Gossypium hirsutum HOM05D004012 ORTHO05D004752 3.0e-145 519.2 445 61.6
Phvul.007G277800 Phaseolus vulgaris HOM05D004012 ORTHO05D004752 8.8e-145 517.7 443 61.4
Oeu034405.1 Olea europaea HOM05D004012 ORTHO05D004752 9.7e-144 514.2 450 60.9
TWI31G0701 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 2.2e-143 513.1 438 61.2
Migut.D01135 Erythranthe guttata HOM05D004012 ORTHO05D004752 3.7e-143 512.3 423 62.2
Ca_12160_v3 Cicer arietinum L. HOM05D004012 ORTHO05D004752 8.3e-143 511.1 443 59.6
MSTRG.4671 Avicennia marina HOM05D004012 ORTHO05D004752 1.4e-142 510.4 438 61.4
Cc07_g20580 Coffea canephora HOM05D004012 ORTHO05D004752 5.3e-142 508.4 393 66.7
PGR119G2008 Punica granatum HOM05D004012 ORTHO05D004752 1.6e-141 506.9 434 59.4
Sed0016932 Sechium edule HOM05D004012 ORTHO05D004752 1.7e-140 503.4 441 61.2
Medtr1g041405 Medicago truncatula HOM05D004012 ORTHO05D004752 6.5e-140 501.5 462 57.8
Lsat_1_v5_gn_0_9061 Lactuca sativa HOM05D004012 ORTHO05D004752 4.2e-139 498.8 442 60.2
Cc07_g20480 Coffea canephora HOM05D004012 ORTHO05D004752 1.2e-138 497.3 393 65.1
EL10Ac4g09708 Beta vulgaris HOM05D004012 ORTHO05D004752 2.1e-138 496.5 439 62.0
arahy.Tifrunner.gnm1.ann1.5Q2P9B Arachis hypogaea HOM05D004012 ORTHO05D004752 2.7e-138 496.1 443 60.0
arahy.Tifrunner.gnm1.ann1.EZQ64B Arachis hypogaea HOM05D004012 ORTHO05D004752 2.7e-138 496.1 443 60.0
Psat6g104000 Pisum sativum HOM05D004012 ORTHO05D004752 8.0e-138 494.6 463 57.0
Eucgr.I00032 Eucalyptus grandis HOM05D004012 ORTHO05D004752 3.0e-137 492.7 434 58.8
TPR.G25177 Trifolium pratense HOM05D004012 ORTHO05D004752 5.7e-136 488.4 457 56.2
Carub.0006s1668 Capsella rubella HOM05D004012 ORTHO05D004752 3.7e-135 485.7 436 57.6
Pp3c20_12330 Physcomitrium patens HOM05D004012 ORTHO05D004752 1.1e-134 484.2 432 58.8
Sp6g25900 Schrenkiella parvula HOM05D004012 ORTHO05D004752 1.4e-134 483.8 436 57.3
DCAR_009624 Daucus carota HOM05D004012 ORTHO05D004752 1.8e-134 483.4 430 61.6
TAR376G0099 Trochodendron aralioides HOM05D004012 ORTHO05D004752 1.8e-134 483.4 381 66.4
CDE05G3168 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 3.1e-134 482.6 442 59.3
Thhalv10013606m.g Eutrema salsugineum HOM05D004012 ORTHO05D004752 3.5e-133 479.2 436 56.9
AT5G18420 Arabidopsis thaliana HOM05D004012 ORTHO05D004752 5.9e-133 478.4 435 56.6
Pp3c24_6950 Physcomitrium patens HOM05D004012 ORTHO05D004752 1.0e-132 477.6 432 58.6
C09p58260 Brassica napus HOM05D004012 ORTHO05D004752 6.6e-132 474.9 452 55.1
BcaB08g36680 Brassica carinata HOM05D004012 ORTHO05D004752 1.9e-131 473.4 439 56.0
HPP92_005635 Vanilla planifolia HOM05D004012 ORTHO05D004752 4.2e-131 472.2 353 68.3
BraA03t10211Z Brassica rapa HOM05D004012 ORTHO05D004752 1.2e-130 470.7 455 54.1
vmacro21003 Vaccinium macrocarpon HOM05D004012 ORTHO05D004752 2.1e-130 469.9 418 61.2
Glyma.10G003500 Glycine max HOM05D004012 ORTHO05D004752 2.8e-130 469.5 410 59.0
Aa31LG11G11210 Aethionema arabicum HOM05D004012 ORTHO05D004752 4.7e-130 468.8 464 51.5
CARHR194600 Cardamine hirsuta HOM05D004012 ORTHO05D004752 4.7e-130 468.8 439 55.8
Potri.004G092400 Populus trichocarpa HOM05D004012 ORTHO05D004752 6.1e-130 468.4 407 59.2
A10p21150 Brassica napus HOM05D004012 ORTHO05D004752 1.0e-129 467.6 458 54.1
BolC3t13514H Brassica oleracea HOM05D004012 ORTHO05D004752 1.0e-129 467.6 455 53.8
BolC9t58691H Brassica oleracea HOM05D004012 ORTHO05D004752 1.0e-129 467.6 454 54.2
BraA10t44178Z Brassica rapa HOM05D004012 ORTHO05D004752 1.4e-129 467.2 459 54.0
PSO761G0211 Papaver somniferum HOM05D004012 ORTHO05D004752 8.9e-129 464.5 438 58.7
PSO210G3799 Papaver somniferum HOM05D004012 ORTHO05D004752 2.6e-128 463.0 438 58.2
Duzib147G1077 Durio zibethinus HOM05D004012 ORTHO05D004752 5.7e-128 461.8 362 66.9
unitig_0.g354 Utricularia gibba HOM05D004012 ORTHO05D004752 1.3e-127 460.7 437 55.8
Sabra04G0062100 Salix brachista HOM05D004012 ORTHO05D004752 1.7e-127 460.3 447 55.3
AL6G29670 Arabidopsis lyrata HOM05D004012 ORTHO05D004752 3.7e-127 459.1 383 61.6
Lsat_1_v5_gn_5_118080 Lactuca sativa HOM05D004012 ORTHO05D004752 6.3e-127 458.4 444 57.7
MBI06_g32154_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 6.3e-127 458.4 424 56.6
CBR_g22449 Chara braunii HOM05D004012 ORTHO05D004752 1.4e-126 457.2 440 56.1
THA.LOC104806688 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 7.0e-126 454.9 444 53.8
Actinidia30855 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.7e-124 450.3 440 58.0
Os11g0240900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 1.7e-124 450.3 434 56.0
TWI79G0644 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 7.3e-123 444.9 438 55.0
Duzib187G0370 Durio zibethinus HOM05D004012 ORTHO05D004752 8.0e-122 441.4 324 70.1
Pp3c23_1780 Physcomitrium patens HOM05D004012 ORTHO05D004752 1.0e-121 441.0 357 63.9
SGA_v2.0_scaffold14G07064 Striga asiatica HOM05D004012 ORTHO05D004752 5.2e-121 438.7 438 54.3
Thecc.01G145600 Theobroma cacao HOM05D004012 ORTHO05D004752 7.0e-118 428.3 386 57.5
Duzib264G1318 Durio zibethinus HOM05D004012 ORTHO05D004752 4.6e-117 425.6 349 64.2
Zm00001eb112220 Zea mays HOM05D004012 ORTHO05D004752 2.3e-116 423.3 441 54.9
Sabra17G0104000 Salix brachista HOM05D004012 ORTHO05D004752 5.0e-116 422.2 397 57.2
Actinidia12239 Actinidia chinensis HOM05D004012 ORTHO05D004752 8.6e-116 421.4 312 68.9
Ciclev10005092m.g Citrus clementina HOM05D004012 ORTHO05D004752 1.1e-115 421.0 386 57.5
Sabra17G0101400 Salix brachista HOM05D004012 ORTHO05D004752 1.5e-115 420.6 397 56.9
Eucgr.I00085 Eucalyptus grandis HOM05D004012 ORTHO05D004752 4.3e-115 419.1 387 55.8
C03p10330 Brassica napus HOM05D004012 ORTHO05D004752 6.2e-114 415.2 424 51.2
Zm00001eb167940 Zea mays HOM05D004012 ORTHO05D004752 1.7e-111 407.1 435 53.6
Actinidia14359 Actinidia chinensis HOM05D004012 ORTHO05D004752 7.8e-109 398.3 473 51.0
Lj4A823T24 Lonicera japonica HOM05D004012 ORTHO05D004752 6.6e-108 395.2 297 68.7
SMO196G0070 Selaginella moellendorffii HOM05D004012 ORTHO05D004752 5.4e-102 375.6 284 68.3
Ah.02g118090 Amaranthus hybridus HOM05D004012 ORTHO05D004752 1.7e-100 370.5 390 51.8
FAN13G1241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 4.9e-95 352.4 335 55.5
DCAR_019944 Daucus carota HOM05D004012 ORTHO05D004752 2.5e-91 340.1 324 56.2
BcaC04g18693 Brassica carinata HOM05D004012 ORTHO05D004752 9.3e-86 321.6 449 45.4
AagrBONN_evm.TU.Sc2ySwM_228.2915 Anthoceros agrestis HOM05D004012 ORTHO05D004752 4.2e-78 296.2 333 47.7
Solyc04g024510.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 6.9e-73 278.9 157 89.2
Nitab4.5_0000064g0100 Nicotiana tabacum HOM05D004012 ORTHO05D004752 1.2e-72 278.1 156 89.1
Nitab4.5_0005261g0020 Nicotiana tabacum HOM05D004012 ORTHO05D004752 1.2e-72 278.1 156 89.1
SEGI_14103 Sequoiadendron giganteum HOM05D004012 ORTHO05D004752 1.0e-71 275.0 180 80.0
Peaxi162Scf00621g00413 Petunia axillaris HOM05D004012 ORTHO05D004752 1.3e-71 274.6 155 89.0
Haze_19373 Corylus avellana HOM05D004012 ORTHO05D004752 5.5e-70 269.2 157 86.6
Nitab4.5_0000064g0090 Nicotiana tabacum HOM05D004012 ORTHO05D004752 2.1e-69 267.3 281 50.2
Peaxi162Scf00621g00412 Petunia axillaris HOM05D004012 ORTHO05D004752 3.5e-69 266.5 287 50.2
Cc07_g20540 Coffea canephora HOM05D004012 ORTHO05D004752 1.0e-68 265.0 361 41.3
Solyc04g024500.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 8.7e-68 261.9 281 49.5
PGSC0003DMG401004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 9.6e-67 258.5 285 49.1
HPP92_005645 Vanilla planifolia HOM05D004012 ORTHO05D004752 3.4e-64 250.0 145 85.5
Oeu036288.1 Olea europaea HOM05D004012 ORTHO05D004752 4.5e-64 249.6 294 48.0
Cpa.g.sc138.55 Carica papaya HOM05D004012 ORTHO05D004752 1.4e-62 244.6 238 53.4
Cre17.g726800 Chlamydomonas reinhardtii HOM05D004012 ORTHO05D004752 3.2e-62 243.4 512 36.9
Nitab4.5_0005261g0010 Nicotiana tabacum HOM05D004012 ORTHO05D004752 9.3e-62 241.9 281 46.3
Os12g0197900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 1.9e-59 234.2 141 82.3
PGSC0003DMG402004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 4.3e-59 233.0 133 88.7
Zm00001eb138450 Zea mays HOM05D004012 ORTHO05D004752 2.4e-57 227.3 285 44.6
THA.LOC104799828 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 3.6e-53 213.4 184 60.9
DCAR_015558 Daucus carota HOM05D004012 ORTHO05D004752 6.7e-52 209.1 124 83.9
Lsat_1_v5_gn_2_19540 Lactuca sativa HOM05D004012 ORTHO05D004752 1.5e-51 208.0 182 58.8
Ah.06g188310 Amaranthus hybridus HOM05D004012 ORTHO05D004752 1.1e-49 201.8 220 50.0
Lju41A56G29 Lonicera japonica HOM05D004012 ORTHO05D004752 2.4e-49 200.7 371 36.4
BcaNung06869 Brassica carinata HOM05D004012 ORTHO05D004752 2.2e-47 194.1 132 78.8
HPP92_005646 Vanilla planifolia HOM05D004012 ORTHO05D004752 1.4e-46 191.4 235 47.2
QL10p034897 Quercus lobata HOM05D004012 ORTHO05D004752 1.0e-44 185.3 167 55.1
Cpa.g.sc138.54 Carica papaya HOM05D004012 ORTHO05D004752 1.4e-41 174.9 99 89.9
SHI03103 Sapria himalayana HOM05D004012 ORTHO05D004752 7.7e-40 169.1 178 56.2
QL10p034885 Quercus lobata HOM05D004012 ORTHO05D000004 1.2e-37 161.8 106 75.5
HPP92_005679 Vanilla planifolia HOM05D004012 ORTHO05D004752 1.8e-36 157.9 310 35.8
TPR.G34339 Trifolium pratense HOM05D004012 ORTHO05D004752 3.0e-36 157.1 476 27.9
Haze_27454 Corylus avellana HOM05D004012 ORTHO05D004752 5.7e-35 152.9 131 58.8
SHI03102 Sapria himalayana HOM05D004012 ORTHO05D004752 9.7e-35 152.1 152 46.7
Lju41A56T30 Lonicera japonica HOM05D004012 ORTHO05D004752 4.0e-28 130.2 146 50.7
MCO14G229 Micromonas commoda HOM05D004012 ORTHO05D004752 5.9e-24 116.3 215 38.6
A03p08840 Brassica napus HOM05D004012 ORTHO05D004752 2.7e-21 107.5 68 80.9
Ciclev10006318m.g Citrus clementina HOM05D004012 ORTHO05D004752 1.4e-20 105.1 58 93.1
Oeu046377.1 Olea europaea HOM05D004012 ORTHO05D004752 6.8e-20 102.8 56 94.6
QL10p034900 Quercus lobata HOM05D004012 ORTHO05D004752 1.5e-19 101.7 113 48.7
PRCOL_00001851 Prasinoderma coloniale HOM05D004012 ORTHO05D004752 1.9e-14 84.7 257 29.6
PSO761G0569 Papaver somniferum HOM05D004012 ORTHO05D004752 5.2e-12 76.6 57 66.7
Actinidia12240 Actinidia chinensis HOM05D004012 ORTHO05D004752 6.8e-12 76.3 99 42.4


User provided reference genes

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