Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1089G095 Amborella trichopoda HOM05D005319 ORTHO05D006632 0.0e+00 1440.6 762 100.0
TAR628G0438 Trochodendron aralioides HOM05D005319 ORTHO05D006632 7.7e-189 664.8 741 50.6
Nn5g27146 Nelumbo nucifera HOM05D005319 ORTHO05D006632 4.7e-186 655.6 674 53.9
Manes.07G031200 Manihot esculenta HOM05D005319 ORTHO05D006632 6.1e-186 655.2 680 52.6
vmacro19823 Vaccinium macrocarpon HOM05D005319 ORTHO05D006632 2.3e-185 653.3 679 51.7
Nn4g24765 Nelumbo nucifera HOM05D005319 ORTHO05D006632 4.0e-185 652.5 719 52.3
CSS0036760 Camellia sinensis var. sinensis HOM05D005319 ORTHO05D006632 3.7e-183 646.0 731 49.8
Hma1.2p1_0052F.1_g030050 Hydrangea macrophylla HOM05D005319 ORTHO05D006632 1.2e-181 641.0 727 50.5
CSS0030211 Camellia sinensis var. sinensis HOM05D005319 ORTHO05D006632 1.3e-180 637.5 732 49.3
Atru.chr6.211 Acer truncatum HOM05D005319 ORTHO05D006632 2.9e-180 636.3 677 51.1
Rhsim05G0118000 Rhododendron simsii HOM05D005319 ORTHO05D006632 5.0e-180 635.6 679 50.7
Lj5g0014697 Lotus japonicus HOM05D005319 ORTHO05D006632 2.6e-176 623.2 678 51.2
Ciclev10000238m.g Citrus clementina HOM05D005319 ORTHO05D006632 1.4e-174 617.5 701 49.6
Potri.004G229732 Populus trichocarpa HOM05D005319 ORTHO05D006632 1.8e-174 617.1 676 51.3
Sabra01G0174900 Salix brachista HOM05D005319 ORTHO05D006632 5.4e-174 615.5 675 51.1
Eucgr.I02798 Eucalyptus grandis HOM05D005319 ORTHO05D006632 1.2e-173 614.4 682 49.7
Glyma.16G000500 Glycine max HOM05D005319 ORTHO05D006632 1.3e-172 610.9 674 50.0
Lj5A285G49 Lonicera japonica HOM05D005319 ORTHO05D006632 8.6e-172 608.2 666 50.5
TPR.G5958 Trifolium pratense HOM05D005319 ORTHO05D006632 1.5e-171 607.4 679 49.2
Actinidia26200 Actinidia chinensis HOM05D005319 ORTHO05D006632 7.2e-171 605.1 681 48.8
MSTRG.16462 Avicennia marina HOM05D005319 ORTHO05D006632 9.5e-171 604.7 675 50.1
arahy.Tifrunner.gnm1.ann1.2TW5YI Arachis hypogaea HOM05D005319 ORTHO05D006632 1.2e-170 604.4 744 45.8
VMungo1127G0564 Vigna mungo HOM05D005319 ORTHO05D006632 1.6e-170 604.0 676 50.3
CsaV3_5G027480 Cucumis sativus L. HOM05D005319 ORTHO05D006632 4.7e-170 602.4 674 48.5
ClCG11G000090 Citrullus lanatus HOM05D005319 ORTHO05D006632 8.0e-170 601.7 573 53.9
Medtr8g015930 Medicago truncatula HOM05D005319 ORTHO05D006632 8.0e-170 601.7 677 49.8
Glyma.12G164200 Glycine max HOM05D005319 ORTHO05D006632 1.0e-169 601.3 674 49.4
Prupe.1G586100 Prunus persica HOM05D005319 ORTHO05D006632 3.4e-168 596.3 737 49.1
Psat1g223960 Pisum sativum HOM05D005319 ORTHO05D006632 4.4e-168 595.9 673 49.6
Cfa004432 Carpinus fangiana HOM05D005319 ORTHO05D006632 2.2e-167 593.6 682 48.8
Phvul.006G221600 Phaseolus vulgaris HOM05D005319 ORTHO05D006632 8.3e-167 591.7 677 48.7
Haze_09972 Corylus avellana HOM05D005319 ORTHO05D006632 1.1e-166 591.3 644 50.8
SGA_v2.0_scaffold254G45232 Striga asiatica HOM05D005319 ORTHO05D006632 3.1e-166 589.7 671 48.0
Sed0027556 Sechium edule HOM05D005319 ORTHO05D006632 4.1e-166 589.3 680 48.2
Thecc.06G020300 Theobroma cacao HOM05D005319 ORTHO05D006632 5.4e-166 589.0 677 49.0
Aqoxy6G00019 Aquilegia oxysepala HOM05D005319 ORTHO05D006632 4.5e-165 585.9 685 47.9
MD15G1443600 Malus domestica HOM05D005319 ORTHO05D006632 5.9e-165 585.5 678 48.5
HPP92_001202 Vanilla planifolia HOM05D005319 ORTHO05D006632 5.9e-165 585.5 690 47.8
Gorai.009G114100 Gossypium raimondii HOM05D005319 ORTHO05D006632 1.7e-164 583.9 675 49.2
QL02p103594 Quercus lobata HOM05D005319 ORTHO05D006632 2.3e-164 583.6 684 49.3
CDE07G1780 Ceratophyllum demersum HOM05D005319 ORTHO05D006632 1.1e-163 581.3 683 47.9
MELO3C022920.2 Cucumis melo HOM05D005319 ORTHO05D006632 1.1e-163 581.3 653 48.5
MD08G1248800 Malus domestica HOM05D005319 ORTHO05D006632 1.1e-163 581.3 737 45.3
Gohir.D05G110000 Gossypium hirsutum HOM05D005319 ORTHO05D006632 1.5e-163 580.9 725 47.7
Sc12g0006940 Simmondsia chinensis HOM05D005319 ORTHO05D006632 9.5e-163 578.2 678 49.6
Gohir.A05G109700 Gossypium hirsutum HOM05D005319 ORTHO05D006632 6.1e-162 575.5 675 48.6
FvH4_5g27610 Fragaria vesca HOM05D005319 ORTHO05D006632 8.0e-162 575.1 733 46.5
Nitab4.5_0003247g0020 Nicotiana tabacum HOM05D005319 ORTHO05D006632 8.0e-162 575.1 685 48.0
Nitab4.5_0005164g0040 Nicotiana tabacum HOM05D005319 ORTHO05D006632 1.0e-161 574.7 681 47.0
PSO017G2844 Papaver somniferum HOM05D005319 ORTHO05D006632 1.4e-161 574.3 679 47.9
RcHm_v2.0_Chr7g0219031 Rosa chinensis HOM05D005319 ORTHO05D006632 1.4e-161 574.3 674 48.8
Dinv29683 Davidia involucrata HOM05D005319 ORTHO05D006632 2.3e-161 573.5 636 51.4
PGR142G1786 Punica granatum HOM05D005319 ORTHO05D006632 3.0e-161 573.2 724 47.0
CAN.G855.58 Capsicum annuum HOM05D005319 ORTHO05D006632 1.5e-160 570.9 736 46.1
Solyc01g102970.3 Solanum lycopersicum HOM05D005319 ORTHO05D006632 2.6e-160 570.1 682 47.8
Zm00001eb260720 Zea mays HOM05D005319 ORTHO05D006632 4.4e-160 569.3 677 47.6
TWI59G0928 Tripterygium wilfordii HOM05D005319 ORTHO05D006632 5.7e-160 568.9 743 45.2
Duzib192G0868 Durio zibethinus HOM05D005319 ORTHO05D006632 7.5e-160 568.5 683 47.7
THA.LOC104806623 Tarenaya hassleriana HOM05D005319 ORTHO05D006632 3.2e-158 563.1 674 45.8
PSO170G3892 Papaver somniferum HOM05D005319 ORTHO05D006632 4.1e-158 562.8 680 47.5
Sopen01g045380 Solanum pennellii HOM05D005319 ORTHO05D006632 7.0e-158 562.0 682 47.5
Lalb_Chr18g0061161 Lupinus albus HOM05D005319 ORTHO05D006632 1.3e-156 557.8 669 47.2
Thhalv10024416m.g Eutrema salsugineum HOM05D005319 ORTHO05D006632 2.3e-156 557.0 677 46.5
COL.COLO4_31114 Corchorus olitorius HOM05D005319 ORTHO05D006632 3.0e-156 556.6 675 46.2
Cc02_g23690 Coffea canephora HOM05D005319 ORTHO05D006632 1.5e-155 554.3 678 46.2
GSVIVG01023136001 Vitis vinifera HOM05D005319 ORTHO05D006632 1.9e-155 553.9 677 47.0
CANSAT01G0698 Cannabis sativa HOM05D005319 ORTHO05D006632 2.1e-154 550.4 675 46.4
Migut.B00712 Erythranthe guttata HOM05D005319 ORTHO05D006632 2.8e-154 550.1 591 49.9
Gorai.011G090800 Gossypium raimondii HOM05D005319 ORTHO05D006632 1.4e-153 547.7 712 46.6
Cpa.g.sc173.4 Carica papaya HOM05D005319 ORTHO05D006632 6.8e-153 545.4 678 46.5
Os08g0113200 Oryza sativa ssp. japonica HOM05D005319 ORTHO05D006632 2.0e-152 543.9 675 45.8
Sp7g22260 Schrenkiella parvula HOM05D005319 ORTHO05D006632 3.4e-152 543.1 677 45.6
CDE04G1013 Ceratophyllum demersum HOM05D005319 ORTHO05D006632 9.8e-152 541.6 687 46.0
AUR62042963 Chenopodium quinoa HOM05D005319 ORTHO05D006632 8.3e-151 538.5 677 47.0
Gohir.D10G083500 Gossypium hirsutum HOM05D005319 ORTHO05D006632 1.4e-150 537.7 712 45.6
unitig_8.g2963 Utricularia gibba HOM05D005319 ORTHO05D006632 4.1e-150 536.2 674 45.4
CiPaw.05G159300 Carya illinoinensis HOM05D005319 ORTHO05D006632 7.0e-150 535.4 507 54.8
FAN18G0588 Fragaria x ananassa HOM05D005319 ORTHO05D006632 9.2e-150 535.0 725 44.7
Peaxi162Scf00011g02012 Petunia axillaris HOM05D005319 ORTHO05D006632 1.6e-149 534.3 685 45.5
FAN13G2205 Fragaria x ananassa HOM05D005319 ORTHO05D006632 2.7e-149 533.5 666 46.8
BcaC09g50887 Brassica carinata HOM05D005319 ORTHO05D006632 2.3e-148 530.4 674 45.1
C01p19580 Brassica napus HOM05D005319 ORTHO05D006632 4.3e-147 526.2 674 44.8
HanXRQChr03g0090101 Helianthus annuus HOM05D005319 ORTHO05D006632 4.3e-147 526.2 679 44.3
A01p15600 Brassica napus HOM05D005319 ORTHO05D006632 9.5e-147 525.0 675 44.7
Carub.0007s1678 Capsella rubella HOM05D005319 ORTHO05D006632 9.5e-147 525.0 676 44.2
BolC1t01883H Brassica oleracea HOM05D005319 ORTHO05D006632 1.4e-145 521.2 674 44.5
CARHR231700 Cardamine hirsuta HOM05D005319 ORTHO05D006632 2.3e-145 520.4 676 44.2
AL7G28980 Arabidopsis lyrata HOM05D005319 ORTHO05D006632 1.2e-144 518.1 676 44.2
BcaNung01135 Brassica carinata HOM05D005319 ORTHO05D006632 1.2e-144 518.1 677 43.3
Aa31LG7G10320 Aethionema arabicum HOM05D005319 ORTHO05D006632 1.5e-144 517.7 690 43.9
BraA01t01501Z Brassica rapa HOM05D005319 ORTHO05D006632 2.0e-144 517.3 676 44.5
ECA240G4281 Erigeron canadensis HOM05D005319 ORTHO05D006632 2.9e-143 513.5 732 41.8
AT4G24270 Arabidopsis thaliana HOM05D005319 ORTHO05D006632 5.4e-142 509.2 675 44.3
AUR62041124 Chenopodium quinoa HOM05D005319 ORTHO05D006632 9.2e-142 508.4 783 41.6
Mapoly0013s0201 Marchantia polymorpha HOM05D005319 ORTHO05D006632 9.2e-142 508.4 685 42.6
FAN04G2290 Fragaria x ananassa HOM05D005319 ORTHO05D006632 2.8e-138 496.9 656 45.7
Pp3c2_22040 Physcomitrium patens HOM05D005319 ORTHO05D006632 3.1e-137 493.4 688 41.1
Lsat_1_v5_gn_9_125320 Lactuca sativa HOM05D005319 ORTHO05D006632 8.9e-137 491.9 689 43.3
SMO367G0583 Selaginella moellendorffii HOM05D005319 ORTHO05D006632 4.4e-136 489.6 683 41.7
DCAR_003273 Daucus carota HOM05D005319 ORTHO05D006632 7.6e-136 488.8 723 42.0
AagrBONN_evm.TU.Sc2ySwM_228.2043 Anthoceros agrestis HOM05D005319 ORTHO05D006632 7.8e-133 478.8 748 39.7
EL10As26g24243 Beta vulgaris HOM05D005319 ORTHO05D006632 7.3e-131 472.2 438 56.4
MBI03_g21086_MAGBIO Magnolia biondii HOM05D005319 ORTHO05D006632 1.5e-128 464.5 387 59.9
SHI04989 Sapria himalayana HOM05D005319 ORTHO05D006632 4.8e-122 443.0 625 43.2
CBR_g44339 Chara braunii HOM05D005319 ORTHO05D006632 9.9e-120 435.3 571 42.0
Prupe.2G119000 Prunus persica HOM05D005319 ORTHO05D006632 1.3e-114 418.3 678 41.3
Ca_00016_v3 Cicer arietinum L. HOM05D005319 ORTHO05D006632 4.6e-93 346.7 511 44.0
Actinidia01642 Actinidia chinensis HOM05D005319 ORTHO05D006632 1.1e-89 335.5 464 42.2
Gohir.A10G157900 Gossypium hirsutum HOM05D005319 ORTHO05D006632 2.4e-89 334.3 488 42.8
Oeu043602.1 Olea europaea HOM05D005319 ORTHO05D006632 4.5e-88 330.1 423 42.8
Cre12.g546700 Chlamydomonas reinhardtii HOM05D005319 ORTHO05D006632 1.9e-78 298.1 552 34.1
C01p22600 Brassica napus HOM05D005319 ORTHO05D006632 6.8e-60 236.5 234 51.7
ECA247G0718 Erigeron canadensis HOM05D005319 ORTHO05D006632 7.0e-57 226.5 357 40.6
Ca_28127_v3 Cicer arietinum L. HOM05D005319 ORTHO05D006632 4.9e-42 177.2 187 48.7
MBI03_g34263_MAGBIO Magnolia biondii HOM05D005319 ORTHO05D006632 1.0e-39 169.5 260 44.2
PGSC0003DMG400020717 Solanum tuberosum HOM05D005319 ORTHO05D006632 1.8e-36 158.7 242 43.0
Oeu043603.1 Olea europaea HOM05D005319 ORTHO05D006632 1.5e-35 155.6 198 44.9
PRCOL_00002327 Prasinoderma coloniale HOM05D005319 ORTHO05D006632 5.4e-25 120.6 528 23.1
EL10As26g24244 Beta vulgaris HOM05D005319 ORTHO05D006632 2.7e-24 118.2 277 36.1
MCO03G034 Micromonas commoda HOM05D005319 ORTHO05D006632 3.5e-24 117.9 191 37.7
SEGI_30405 Sequoiadendron giganteum HOM05D005319 ORTHO05D006632 3.5e-24 117.9 91 57.1
SHI04988 Sapria himalayana HOM05D005319 ORTHO05D006632 2.4e-20 105.1 85 58.8
Lj1A1166G72 Lonicera japonica HOM05D005319 ORTHO05D006632 4.0e-20 104.4 186 36.6
BcaC09g50640 Brassica carinata HOM05D005319 ORTHO05D006632 1.0e-15 89.7 213 29.6
SEGI_30773 Sequoiadendron giganteum HOM05D005319 ORTHO05D006632 1.9e-14 85.5 103 40.8
Ciclev10004084m.g Citrus clementina HOM05D005319 ORTHO05D006632 8.1e-13 80.1 74 56.8
Oeu016642.3 Olea europaea HOM05D001586 ORTHO05D001543 4.9e-10 70.9 67 50.7
SEGI_13206 Sequoiadendron giganteum HOM05D005319 ORTHO05D006632 9.3e-09 66.6 52 59.6
Hund15346 Selenicereus undatus HOM05D005319 ORTHO05D006632 1.9e-06 58.9 161 32.9


User provided reference genes

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