Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1089G047 Amborella trichopoda HOM05D003469 ORTHO05D004084 0.0e+00 1570.1 915 100.0
TAR628G0771 Trochodendron aralioides HOM05D003469 ORTHO05D004084 4.7e-193 679.1 866 45.5
Aqoxy6G00028 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 1.5e-175 620.9 880 41.7
MBI03_g18641_MAGBIO Magnolia biondii HOM05D003469 ORTHO05D004084 2.6e-175 620.2 881 42.5
CiPaw.03G010300 Carya illinoinensis HOM05D003469 ORTHO05D004084 1.4e-168 597.8 879 41.5
Nn5g27173 Nelumbo nucifera HOM05D003469 ORTHO05D004084 1.9e-165 587.4 866 41.1
Actinidia21939 Actinidia chinensis HOM05D003469 ORTHO05D004084 4.2e-165 586.3 879 40.8
CSS0010807 Camellia sinensis var. sinensis HOM05D003469 ORTHO05D004084 9.3e-165 585.1 873 46.8
Dinv28114 Davidia involucrata HOM05D003469 ORTHO05D004084 1.6e-164 584.3 877 40.7
Phvul.011G031000 Phaseolus vulgaris HOM05D003469 ORTHO05D004084 6.0e-164 582.4 877 40.4
arahy.Tifrunner.gnm1.ann1.M9HC5A Arachis hypogaea HOM05D003469 ORTHO05D004084 1.0e-163 581.6 881 39.8
Solyc06g063420.4 Solanum lycopersicum HOM05D003469 ORTHO05D004084 1.3e-163 581.3 873 41.7
GSVIVG01036699001 Vitis vinifera HOM05D003469 ORTHO05D004084 1.9e-162 577.4 913 40.1
PSO170G4646 Papaver somniferum HOM05D003469 ORTHO05D004084 2.1e-161 573.9 881 40.7
Sc09g0010840 Simmondsia chinensis HOM05D003469 ORTHO05D004084 2.4e-160 570.5 875 40.6
Sopen06g022880 Solanum pennellii HOM05D003469 ORTHO05D004084 2.4e-160 570.5 873 41.4
MSTRG.1003 Avicennia marina HOM05D003469 ORTHO05D004084 3.1e-160 570.1 871 41.0
Thecc.08G168800 Theobroma cacao HOM05D003469 ORTHO05D004084 6.9e-160 568.9 868 40.3
arahy.Tifrunner.gnm1.ann1.046I3L Arachis hypogaea HOM05D003469 ORTHO05D004084 9.0e-160 568.5 874 39.7
Glyma.12G027700 Glycine max HOM05D003469 ORTHO05D004084 1.5e-159 567.8 867 40.1
Cc00_g11470 Coffea canephora HOM05D003469 ORTHO05D004084 2.6e-159 567.0 875 39.4
Lsat_1_v5_gn_4_131841 Lactuca sativa HOM05D003469 ORTHO05D004084 2.6e-159 567.0 869 46.5
CAN.G14.42 Capsicum annuum HOM05D003469 ORTHO05D004084 4.5e-159 566.2 875 48.2
Glyma.11G102000 Glycine max HOM05D003469 ORTHO05D004084 7.6e-159 565.5 878 40.3
VMungo1127G1455 Vigna mungo HOM05D003469 ORTHO05D004084 4.2e-157 559.7 879 39.5
AUR62008300 Chenopodium quinoa HOM05D003469 ORTHO05D004084 1.2e-156 558.1 870 39.7
EL10Ac5g10861 Beta vulgaris HOM05D003469 ORTHO05D004084 3.5e-156 556.6 906 39.4
ECA232G2309 Erigeron canadensis HOM05D003469 ORTHO05D004084 3.9e-155 553.1 865 38.2
MELO3C013095.2 Cucumis melo HOM05D003469 ORTHO05D004084 5.1e-155 552.7 878 40.4
MD09G1155000 Malus domestica HOM05D003469 ORTHO05D004084 8.7e-155 552.0 874 46.0
ClCG07G013810 Citrullus lanatus HOM05D003469 ORTHO05D004084 1.5e-154 551.2 878 40.0
Prupe.8G070000 Prunus persica HOM05D003469 ORTHO05D004084 1.5e-154 551.2 867 45.9
Lalb_Chr07g0195581 Lupinus albus HOM05D003469 ORTHO05D004084 3.3e-154 550.1 884 39.4
Eucgr.G01221 Eucalyptus grandis HOM05D003469 ORTHO05D004084 1.6e-153 547.7 871 38.9
Lj9C162G1 Lonicera japonica HOM05D003469 ORTHO05D004084 1.4e-152 544.7 904 42.5
CsaV3_3G043790 Cucumis sativus L. HOM05D003469 ORTHO05D004084 4.1e-152 543.1 878 39.9
Migut.C00329 Erythranthe guttata HOM05D003469 ORTHO05D004084 1.5e-151 541.2 870 39.4
Nitab4.5_0003757g0100 Nicotiana tabacum HOM05D003469 ORTHO05D004084 7.7e-151 538.9 887 44.0
RcHm_v2.0_Chr2g0151101 Rosa chinensis HOM05D003469 ORTHO05D004084 1.0e-150 538.5 889 37.5
Lj1g0005967 Lotus japonicus HOM05D003469 ORTHO05D004084 3.8e-150 536.6 841 40.2
Peaxi162Scf00818g00323 Petunia axillaris HOM05D003469 ORTHO05D004084 5.0e-150 536.2 836 45.0
FvH4_6g37900 Fragaria vesca HOM05D003469 ORTHO05D004084 6.5e-150 535.8 869 37.7
FAN14G5376 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.1e-149 535.0 869 37.6
Lj9C173G0 Lonicera japonica HOM05D003469 ORTHO05D004084 3.2e-149 533.5 873 39.5
RcHm_v2.0_Chr2g0151071 Rosa chinensis HOM05D003469 ORTHO05D004084 1.2e-148 531.6 869 37.9
Hund09398 Selenicereus undatus HOM05D003469 ORTHO05D004084 1.6e-148 531.2 875 38.3
HanXRQChr09g0266911 Helianthus annuus HOM05D003469 ORTHO05D004084 3.9e-147 526.6 866 37.8
Manes.06G016500 Manihot esculenta HOM05D003469 ORTHO05D004084 1.1e-146 525.0 844 47.5
TWI38G1177 Tripterygium wilfordii HOM05D003469 ORTHO05D004084 7.4e-146 522.3 846 42.9
SMO164G0159 Selaginella moellendorffii HOM05D003469 ORTHO05D004084 9.7e-146 521.9 878 38.2
FAN02G0848 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.4e-144 518.1 869 37.1
SGA_v2.0_scaffold8G04312 Striga asiatica HOM05D003469 ORTHO05D004084 3.1e-144 516.9 912 36.7
AUR62031062 Chenopodium quinoa HOM05D003469 ORTHO05D004084 9.1e-144 515.4 870 38.4
FAN09G4617 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.0e-143 514.2 869 36.8
Sed0013857 Sechium edule HOM05D003469 ORTHO05D004084 4.5e-143 513.1 872 39.3
Rhsim12G0000800 Rhododendron simsii HOM05D003469 ORTHO05D004084 1.2e-140 505.0 755 40.5
CANSAT78G0348 Cannabis sativa HOM05D003469 ORTHO05D004084 1.4e-139 501.5 878 38.0
Gohir.D12G231100 Gossypium hirsutum HOM05D003469 ORTHO05D004084 1.5e-138 498.0 832 38.5
Gorai.008G247300 Gossypium raimondii HOM05D003469 ORTHO05D004084 3.3e-138 496.9 849 38.0
Aqoxy4G02849 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 1.7e-137 494.6 867 37.5
HPP92_015320 Vanilla planifolia HOM05D003469 ORTHO05D004084 3.1e-136 490.3 860 37.3
Gohir.A12G230000 Gossypium hirsutum HOM05D003469 ORTHO05D004084 5.3e-136 489.6 849 37.6
Medtr4g079390 Medicago truncatula HOM05D003469 ORTHO05D004084 7.0e-136 489.2 884 36.7
Atru.chr9.1130 Acer truncatum HOM05D003469 ORTHO05D004084 3.5e-135 486.9 876 35.8
SalBow7G2370 Salvia bowleyana HOM05D003469 ORTHO05D004084 3.5e-135 486.9 962 35.8
Potri.013G128900 Populus trichocarpa HOM05D003469 ORTHO05D004084 3.2e-133 480.3 857 42.9
Medtr4g074860 Medicago truncatula HOM05D003469 ORTHO05D004084 5.5e-133 479.6 906 35.4
Duzib235G0325 Durio zibethinus HOM05D003469 ORTHO05D004084 7.2e-133 479.2 844 37.4
Dinv15687 Davidia involucrata HOM05D003469 ORTHO05D004084 9.4e-133 478.8 851 37.8
DCAR_001477 Daucus carota HOM05D003469 ORTHO05D004084 3.3e-130 470.3 882 35.5
TPR.G38733 Trifolium pratense HOM05D003469 ORTHO05D004084 2.9e-126 457.2 884 34.3
Peaxi162Scf00015g00107 Petunia axillaris HOM05D003469 ORTHO05D004084 7.2e-125 452.6 838 41.6
QL09p054764 Quercus lobata HOM05D003469 ORTHO05D004084 9.4e-125 452.2 620 43.5
unitig_26.g9845 Utricularia gibba HOM05D003469 ORTHO05D004084 1.4e-123 448.4 899 34.6
Nitab4.5_0002906g0070 Nicotiana tabacum HOM05D003469 ORTHO05D004084 4.0e-123 446.8 850 34.9
Nitab4.5_0005224g0040 Nicotiana tabacum HOM05D003469 ORTHO05D004084 1.2e-122 445.3 874 33.9
Pp3c8_10360 Physcomitrium patens HOM05D003469 ORTHO05D004084 4.5e-119 433.3 897 38.6
Os11g0266800 Oryza sativa ssp. japonica HOM05D003469 ORTHO05D004084 5.9e-119 433.0 871 34.8
Mapoly0024s0108 Marchantia polymorpha HOM05D003469 ORTHO05D004084 2.1e-116 424.5 827 34.5
AagrBONN_evm.TU.Sc2ySwM_362.2764 Anthoceros agrestis HOM05D003469 ORTHO05D004084 7.5e-114 416.0 885 35.4
vmacro00914 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 1.7e-110 404.8 1326 27.8
FAN27G0386 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.9e-110 404.1 846 34.0
RcHm_v2.0_Chr6g0293861 Rosa chinensis HOM05D003469 ORTHO05D004084 5.0e-110 403.3 882 34.0
Pp3c8_10366 Physcomitrium patens HOM05D003469 ORTHO05D004084 4.7e-108 396.7 894 37.2
Nitab4.5_0002354g0130 Nicotiana tabacum HOM05D003469 ORTHO05D004084 4.4e-106 390.2 889 36.6
Lj9A422T76 Lonicera japonica HOM05D003469 ORTHO05D004084 2.8e-105 387.5 728 44.8
FAN15G0576 Fragaria x ananassa HOM05D003469 ORTHO05D004084 3.1e-104 384.0 878 32.8
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 4.1e-104 383.6 877 33.1
TPR.G32330 Trifolium pratense HOM05D003469 ORTHO05D004084 4.5e-103 380.2 861 32.3
AUR62039415 Chenopodium quinoa HOM05D003469 ORTHO05D004084 1.7e-102 378.3 624 40.1
THA.LOC104807542 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 6.8e-99 366.3 850 32.4
C05p16090 Brassica napus HOM05D003469 ORTHO05D004084 9.8e-98 362.5 864 32.1
BcaC05g25689 Brassica carinata HOM05D003469 ORTHO05D004084 1.3e-97 362.1 864 32.1
BolC5t30309H Brassica oleracea HOM05D003469 ORTHO05D004084 1.3e-97 362.1 864 31.9
BraA06t24509Z Brassica rapa HOM05D003469 ORTHO05D004084 4.1e-96 357.1 852 32.9
A06p13570 Brassica napus HOM05D003469 ORTHO05D004084 5.4e-96 356.7 852 32.9
Ciclev10019721m.g Citrus clementina HOM05D003469 ORTHO05D004084 7.0e-96 356.3 521 42.0
Thhalv10006758m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 9.2e-96 355.9 858 31.5
BcaB07g34024 Brassica carinata HOM05D003469 ORTHO05D004084 5.0e-94 350.1 856 30.7
BolC4t22588H Brassica oleracea HOM05D003469 ORTHO05D004084 5.0e-94 350.1 857 31.3
AL1G30030 Arabidopsis lyrata HOM05D003469 ORTHO05D004084 1.2e-92 345.5 845 31.2
AT1G17680 Arabidopsis thaliana HOM05D003469 ORTHO05D004084 8.0e-92 342.8 845 31.2
BcaC02g11929 Brassica carinata HOM05D003469 ORTHO05D004084 8.0e-92 342.8 853 31.1
Carub.0001s1741 Capsella rubella HOM05D003469 ORTHO05D004084 4.0e-91 340.5 847 31.5
CDE05G0531 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 2.9e-89 334.3 457 43.1
FvH4_2g25610 Fragaria vesca HOM05D003469 ORTHO05D004084 1.6e-87 328.6 877 30.7
Zm00001eb171180 Zea mays HOM05D003469 ORTHO05D004084 2.1e-87 328.2 868 29.5
C04p09790 Brassica napus HOM05D003469 ORTHO05D004084 3.5e-87 327.4 868 32.9
Aa31LG7G2510 Aethionema arabicum HOM05D003469 ORTHO05D004084 4.7e-84 317.0 846 31.0
TAR633G1719 Trochodendron aralioides HOM05D003469 ORTHO05D004084 6.2e-84 316.6 414 42.5
EL10Ac5g10434 Beta vulgaris HOM05D003469 ORTHO05D004084 6.8e-83 313.2 655 33.6
Ah.15g095790 Amaranthus hybridus HOM05D003469 ORTHO05D004084 1.2e-82 312.4 1370 24.5
THA.LOC104800339 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 1.2e-82 312.4 856 30.8
Ciclev10026956m.g Citrus clementina HOM05D003469 ORTHO05D004084 2.0e-82 311.6 853 30.6
TAR633G1289 Trochodendron aralioides HOM05D003469 ORTHO05D004084 1.5e-74 285.4 407 43.2
Haze_14033 Corylus avellana HOM05D003469 ORTHO05D004084 7.6e-74 283.1 574 36.4
MD17G1141000 Malus domestica HOM05D003469 ORTHO05D004084 4.8e-68 263.8 409 44.7
AUR62000094 Chenopodium quinoa HOM05D003469 ORTHO05D004084 2.6e-66 258.1 457 35.0
Potri.013G129500 Populus trichocarpa HOM05D003469 ORTHO05D000003 6.2e-60 236.9 401 36.2
Ca_19034_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 1.8e-59 235.3 331 43.2
FvH4_6g38030 Fragaria vesca HOM05D003469 ORTHO05D004084 1.8e-59 235.3 387 35.7
PGSC0003DMG400033134 Solanum tuberosum HOM05D003469 ORTHO05D004084 3.9e-54 217.6 317 44.2
Cpa.g.sc21.245 Carica papaya HOM05D003469 ORTHO05D004084 1.1e-53 216.1 276 45.3
CDE05G3544 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 7.4e-53 213.4 376 35.4
CARHR018280 Cardamine hirsuta HOM05D003469 ORTHO05D004084 5.8e-50 203.8 472 30.5
COL.COLO4_25121 Corchorus olitorius HOM05D003469 ORTHO05D004084 7.6e-50 203.4 393 32.8
Sp1g15780 Schrenkiella parvula HOM05D003469 ORTHO05D004084 2.3e-46 191.8 422 33.9
MD17G1141100 Malus domestica HOM05D003469 ORTHO05D004084 2.8e-44 184.9 305 39.7
QL09p054785 Quercus lobata HOM05D003469 ORTHO05D004084 3.1e-43 181.4 176 52.8
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 4.0e-43 181.0 431 30.4
Ciclev10020572m.g Citrus clementina HOM05D003469 ORTHO05D004084 1.7e-41 175.6 328 55.2
CBR_g36749 Chara braunii HOM05D003469 ORTHO05D004084 7.1e-40 170.2 511 27.8
COL.COLO4_25120 Corchorus olitorius HOM05D003469 ORTHO05D004084 5.1e-38 164.1 301 39.9
SEGI_05114 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 8.2e-36 156.8 150 54.7
Oeu035042.1 Olea europaea HOM05D003469 ORTHO05D004084 5.3e-35 154.1 181 45.9
Ca_16139_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 9.4e-32 143.3 306 30.4
Medtr4g074690 Medicago truncatula HOM05D003469 ORTHO05D004084 1.0e-30 139.8 198 40.9
Sabra13G0107500 Salix brachista HOM05D000001 ORTHO05D000003 1.5e-29 136.0 169 42.6
Oeu019664.1 Olea europaea HOM05D003469 ORTHO05D004084 2.5e-29 135.2 359 30.4
FvH4_6g38050 Fragaria vesca HOM05D003469 ORTHO05D004084 7.4e-29 133.7 808 22.6
C04p00480 Brassica napus HOM05D003469 ORTHO05D004084 1.7e-28 132.5 789 24.0
vmacro23125 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 2.8e-28 131.7 415 26.5
Cre10.g464950 Chlamydomonas reinhardtii HOM05D003469 ORTHO05D004084 2.6e-26 125.2 324 28.7
SHI03012 Sapria himalayana HOM05D003469 ORTHO05D004084 2.6e-26 125.2 273 34.4
SHI03015 Sapria himalayana HOM05D003469 ORTHO05D004084 3.8e-25 121.3 247 32.8
SEGI_26656 Sequoiadendron giganteum HOM05D003469 ORTHO05D000001 3.2e-24 118.2 133 45.9
Psat0s3379g0080 Pisum sativum HOM05D003469 ORTHO05D004084 7.2e-24 117.1 190 35.8
Ca_16137_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 1.2e-23 116.3 176 39.8
Cpa.g.sc21.247 Carica papaya HOM05D003469 ORTHO05D004084 4.7e-23 114.4 133 47.4
Haze_14034 Corylus avellana HOM05D003469 ORTHO05D004084 1.8e-22 112.5 118 47.5
Haze_14035 Corylus avellana HOM05D003469 ORTHO05D004084 2.2e-20 105.5 116 51.7
Cpa.g.sc21.244 Carica papaya HOM05D003469 ORTHO05D004084 6.3e-20 104.0 81 65.4
FAN20G2279 Fragaria x ananassa HOM05D003469 ORTHO05D004084 6.3e-20 104.0 467 24.6
Rhsim02G0229800 Rhododendron simsii HOM05D000151 ORTHO05D000074 1.1e-19 103.2 80 63.8
Lsat_1_v5_gn_0_35341 Lactuca sativa HOM05D003469 ORTHO05D004084 1.8e-19 102.4 147 38.8
C04p00500 Brassica napus HOM05D003469 ORTHO05D004084 2.4e-19 102.1 378 25.9
BcaC02g12574 Brassica carinata HOM05D003469 ORTHO05D004084 5.3e-19 100.9 90 57.8
HanXRQChr13g0406831 Helianthus annuus HOM05D003469 ORTHO05D004084 1.2e-18 99.8 82 57.3
SEGI_08666 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 1.5e-18 99.4 87 64.4
Thhalv10002713m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 3.5e-18 98.2 82 61.0
Psat0s3379g0040 Pisum sativum HOM05D003469 ORTHO05D004084 4.5e-18 97.8 126 40.5
ECA232G2749 Erigeron canadensis HOM05D001807 ORTHO05D002044 1.3e-17 96.3 87 52.9
BcaC02g12573 Brassica carinata HOM05D003469 ORTHO05D004084 1.6e-15 89.4 179 33.0
Actinidia02459 Actinidia chinensis HOM05D003469 ORTHO05D004084 3.6e-15 88.2 82 56.1
SEGI_39938 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 1.0e-14 86.7 141 34.8
SHI03013 Sapria himalayana HOM05D003469 ORTHO05D004084 2.2e-12 79.0 90 45.6
FAN20G1461 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.4e-11 76.3 132 36.4
Oeu026515.1 Olea europaea HOM05D003469 ORTHO05D004084 5.3e-11 74.3 73 47.9
Glyma.07G124800 Glycine max HOM05D003469 ORTHO05D004084 2.1e-07 62.4 73 45.2
PRCOL_00004204 Prasinoderma coloniale HOM05D003469 ORTHO05D004084 2.1e-07 62.4 430 36.7
MCO03G148 Micromonas commoda HOM05D003469 ORTHO05D004084 3.6e-07 61.6 81 37.0
Ca_16140_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 8.0e-07 60.5 73 45.2
Ca_19033_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 3.0e-06 58.5 56 42.9


User provided reference genes

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