Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1089G039 Amborella trichopoda HOM05D005625 ORTHO05D007564 1.3e-296 1022.3 510 100.0
MBI03_g28415_MAGBIO Magnolia biondii HOM05D005625 ORTHO05D007564 2.6e-188 662.5 514 66.0
TAR381G1540 Trochodendron aralioides HOM05D005625 ORTHO05D007564 3.7e-187 658.7 506 66.2
RcHm_v2.0_Chr7g0232101 Rosa chinensis HOM05D005625 ORTHO05D007564 6.3e-187 657.9 505 64.6
FAN18G2766 Fragaria x ananassa HOM05D005625 ORTHO05D007564 1.8e-186 656.4 505 64.6
CSS0007097 Camellia sinensis var. sinensis HOM05D005625 ORTHO05D007564 3.1e-186 655.6 502 65.3
Prupe.1G544200 Prunus persica HOM05D005625 ORTHO05D007564 5.3e-186 654.8 505 64.8
FvH4_5g33370 Fragaria vesca HOM05D005625 ORTHO05D007564 7.0e-186 654.4 505 64.4
CiPaw.04G063100 Carya illinoinensis HOM05D005625 ORTHO05D007564 2.6e-185 652.5 505 64.0
QL09p002063 Quercus lobata HOM05D005625 ORTHO05D007564 2.6e-185 652.5 505 64.8
Haze_13951 Corylus avellana HOM05D005625 ORTHO05D007564 1.9e-183 646.4 505 64.8
GSVIVG01036380001 Vitis vinifera HOM05D005625 ORTHO05D007564 4.7e-182 641.7 505 63.8
MD15G1395400 Malus domestica HOM05D005625 ORTHO05D007564 1.8e-181 639.8 502 62.9
Thecc.08G177300 Theobroma cacao HOM05D005625 ORTHO05D007564 3.0e-181 639.0 499 64.7
Aqoxy5G00836 Aquilegia oxysepala HOM05D005625 ORTHO05D007564 8.8e-181 637.5 500 64.4
Rhsim02G0173300 Rhododendron simsii HOM05D005625 ORTHO05D007564 8.8e-181 637.5 501 64.3
COL.COLO4_24882 Corchorus olitorius HOM05D005625 ORTHO05D007564 1.2e-180 637.1 499 63.5
Gohir.A13G116000 Gossypium hirsutum HOM05D005625 ORTHO05D007564 2.0e-180 636.3 499 63.7
Gohir.D13G119200 Gossypium hirsutum HOM05D005625 ORTHO05D007564 5.7e-180 634.8 499 63.7
Gorai.013G133700 Gossypium raimondii HOM05D005625 ORTHO05D007564 2.2e-179 632.9 499 63.5
Potri.019G072700 Populus trichocarpa HOM05D005625 ORTHO05D007564 2.8e-179 632.5 505 62.2
TWI18G0532 Tripterygium wilfordii HOM05D005625 ORTHO05D007564 3.7e-179 632.1 501 64.1
FAN04G0928 Fragaria x ananassa HOM05D005625 ORTHO05D007564 1.8e-178 629.8 524 61.1
Actinidia29383 Actinidia chinensis HOM05D005625 ORTHO05D007564 5.3e-178 628.2 506 63.6
PSO017G2953 Papaver somniferum HOM05D005625 ORTHO05D007564 5.3e-178 628.2 508 62.2
AUR62024898 Chenopodium quinoa HOM05D005625 ORTHO05D007564 7.0e-178 627.9 503 63.4
Ciclev10014850m.g Citrus clementina HOM05D005625 ORTHO05D007564 1.6e-177 626.7 506 63.4
CANSAT56G1751 Cannabis sativa HOM05D005625 ORTHO05D007564 7.7e-177 624.4 502 62.2
Manes.18G118300 Manihot esculenta HOM05D005625 ORTHO05D007564 7.7e-177 624.4 506 63.4
PSO170G6063 Papaver somniferum HOM05D005625 ORTHO05D007564 1.7e-176 623.2 499 63.3
AUR62030641 Chenopodium quinoa HOM05D005625 ORTHO05D007564 5.0e-176 621.7 519 61.8
Sc14g0005960 Simmondsia chinensis HOM05D005625 ORTHO05D007564 7.2e-175 617.8 498 63.1
Lalb_Chr15g0088631 Lupinus albus HOM05D005625 ORTHO05D007564 1.6e-174 616.7 499 62.5
Sabra19G0084000 Salix brachista HOM05D005625 ORTHO05D007564 1.6e-174 616.7 523 60.0
Phvul.006G130900 Phaseolus vulgaris HOM05D005625 ORTHO05D007564 1.0e-173 614.0 505 60.6
Lj6g0017830 Lotus japonicus HOM05D005625 ORTHO05D007564 6.8e-173 611.3 506 61.3
Sopen11g018630 Solanum pennellii HOM05D005625 ORTHO05D007564 6.8e-173 611.3 506 60.9
Ah.02g127420 Amaranthus hybridus HOM05D005625 ORTHO05D007564 2.6e-172 609.4 503 62.4
Oeu028924.1 Olea europaea HOM05D005625 ORTHO05D007564 2.8e-171 605.9 505 62.4
PGR044G1301 Punica granatum HOM05D005625 ORTHO05D007564 6.3e-171 604.7 498 62.9
DCAR_006209 Daucus carota HOM05D005625 ORTHO05D007564 1.1e-170 604.0 500 61.8
Lj7C421T14 Lonicera japonica HOM05D005625 ORTHO05D007564 1.4e-170 603.6 500 62.0
Cfa008087 Carpinus fangiana HOM05D005625 ORTHO05D007564 3.1e-170 602.4 505 61.6
arahy.Tifrunner.gnm1.ann1.U40EKY Arachis hypogaea HOM05D005625 ORTHO05D007564 1.6e-169 600.1 551 58.4
CsaV3_1G044090 Cucumis sativus L. HOM05D005625 ORTHO05D007564 5.9e-169 598.2 501 58.9
DCAR_017431 Daucus carota HOM05D005625 ORTHO05D007564 5.9e-169 598.2 500 61.0
arahy.Tifrunner.gnm1.ann1.23CDJN Arachis hypogaea HOM05D005625 ORTHO05D007564 7.7e-169 597.8 506 61.9
MELO3C011830.2 Cucumis melo HOM05D005625 ORTHO05D007564 1.3e-168 597.0 505 58.4
Cc10_g08740 Coffea canephora HOM05D005625 ORTHO05D007564 2.9e-168 595.9 506 59.9
Glyma.09G021200 Glycine max HOM05D005625 ORTHO05D007564 3.2e-167 592.4 505 58.8
CAN.G990.6 Capsicum annuum HOM05D005625 ORTHO05D007564 4.2e-167 592.0 498 60.2
Zm00001eb233200 Zea mays HOM05D005625 ORTHO05D007564 5.5e-167 591.7 508 59.4
Medtr2g029250 Medicago truncatula HOM05D005625 ORTHO05D007564 8.0e-166 587.8 508 59.4
THA.LOC104810982 Tarenaya hassleriana HOM05D005625 ORTHO05D007564 8.0e-166 587.8 502 59.2
Migut.C01373 Erythranthe guttata HOM05D005625 ORTHO05D007564 2.3e-165 586.3 504 58.3
ECA232G1187 Erigeron canadensis HOM05D005625 ORTHO05D007564 2.0e-164 583.2 502 58.8
Sed0019265 Sechium edule HOM05D005625 ORTHO05D007564 7.5e-164 581.3 499 58.1
TPR.G17519 Trifolium pratense HOM05D005625 ORTHO05D007564 2.8e-163 579.3 506 58.7
MSTRG.25496 Avicennia marina HOM05D005625 ORTHO05D007564 6.3e-163 578.2 502 59.4
Eucgr.K01840 Eucalyptus grandis HOM05D005625 ORTHO05D007564 1.4e-162 577.0 506 58.7
HanXRQChr11g0326321 Helianthus annuus HOM05D005625 ORTHO05D007564 3.1e-162 575.9 501 58.1
AL2G31100 Arabidopsis lyrata HOM05D005625 ORTHO05D007564 4.1e-162 575.5 499 58.3
Carub.0002s1829 Capsella rubella HOM05D005625 ORTHO05D007564 1.0e-160 570.9 499 57.9
Dinv16108 Davidia involucrata HOM05D005625 ORTHO05D007564 1.3e-160 570.5 448 64.5
AT1G71440 Arabidopsis thaliana HOM05D005625 ORTHO05D007564 3.8e-160 568.9 499 58.1
Thhalv10018392m.g Eutrema salsugineum HOM05D005625 ORTHO05D007564 6.6e-160 568.2 499 57.3
EL10Ac6g14591 Beta vulgaris HOM05D005625 ORTHO05D007564 1.5e-159 567.0 561 54.7
arahy.Tifrunner.gnm1.ann1.I4CKLR Arachis hypogaea HOM05D005625 ORTHO05D007564 4.3e-159 565.5 508 59.1
arahy.Tifrunner.gnm1.ann1.0NEN23 Arachis hypogaea HOM05D005625 ORTHO05D007564 2.8e-158 562.8 563 55.2
CARHR291240 Cardamine hirsuta HOM05D005625 ORTHO05D007564 1.0e-157 560.8 507 56.2
Psat1g169440 Pisum sativum HOM05D005625 ORTHO05D007564 5.2e-157 558.5 501 56.5
Aa31LG4G9140 Aethionema arabicum HOM05D005625 ORTHO05D007564 1.5e-156 557.0 499 57.1
Lsat_1_v5_gn_2_82040 Lactuca sativa HOM05D005625 ORTHO05D007564 1.7e-155 553.5 502 57.8
VMungo0540G1936 Vigna mungo HOM05D005625 ORTHO05D007564 7.0e-154 548.1 536 53.0
Duzib177G0227 Durio zibethinus HOM05D005625 ORTHO05D007564 1.7e-152 543.5 504 56.5
Sp5g26600 Schrenkiella parvula HOM05D005625 ORTHO05D007564 3.0e-152 542.7 499 55.1
HPP92_015711 Vanilla planifolia HOM05D005625 ORTHO05D007564 9.5e-151 537.7 511 55.0
HPP92_026650 Vanilla planifolia HOM05D005625 ORTHO05D007564 4.9e-147 525.4 509 54.0
Nn5g27281 Nelumbo nucifera HOM05D005625 ORTHO05D007564 4.1e-146 522.3 407 65.4
SGA_v2.0_scaffold118G32606 Striga asiatica HOM05D005625 ORTHO05D007564 2.7e-145 519.6 514 53.5
unitig_578.g16118 Utricularia gibba HOM05D005625 ORTHO05D007564 1.0e-144 517.7 506 54.3
BolC6t39611H Brassica oleracea HOM05D005625 ORTHO05D007564 6.8e-141 505.0 501 52.7
BcaC08g46580 Brassica carinata HOM05D005625 ORTHO05D007564 2.0e-140 503.4 499 52.5
BraA07t31336Z Brassica rapa HOM05D005625 ORTHO05D007564 1.7e-139 500.4 501 52.3
A07p37730 Brassica napus HOM05D005625 ORTHO05D007564 3.5e-137 492.7 501 51.9
Cpa.g.sc21.80 Carica papaya HOM05D005625 ORTHO05D007564 4.6e-137 492.3 405 61.2
Solyc11g042470.1 Solanum lycopersicum HOM05D005625 ORTHO05D007564 1.3e-136 490.7 407 59.5
Ca_07151_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 9.5e-135 484.6 499 51.5
vmacro11035 Vaccinium macrocarpon HOM05D005625 ORTHO05D007564 2.0e-132 476.9 571 48.7
Peaxi162Scf00078g00533 Petunia axillaris HOM05D005625 ORTHO05D007564 1.7e-131 473.8 395 58.2
C06p45600 Brassica napus HOM05D005625 ORTHO05D007564 4.1e-130 469.2 501 50.7
Mapoly0057s0080 Marchantia polymorpha HOM05D005625 ORTHO05D007564 5.1e-128 462.2 515 49.1
Nitab4.5_0001155g0010 Nicotiana tabacum HOM05D005625 ORTHO05D007564 5.1e-128 462.2 390 59.0
Ca_00793_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 1.1e-127 461.1 499 49.7
SMO145G0237 Selaginella moellendorffii HOM05D005625 ORTHO05D007564 2.4e-125 453.4 500 48.2
Pp3c13_4420 Physcomitrium patens HOM05D005625 ORTHO05D007564 3.4e-124 449.5 510 45.7
SHI16719 Sapria himalayana HOM05D005625 ORTHO05D007564 6.0e-113 412.1 507 46.4
Sabra15G0066200 Salix brachista HOM05D005625 ORTHO05D007564 5.6e-111 405.6 356 57.3
Sabra15G0066000 Salix brachista HOM05D005625 ORTHO05D007564 2.1e-110 403.7 356 57.0
AagrBONN_evm.TU.Sc2ySwM_344.4267 Anthoceros agrestis HOM05D005625 ORTHO05D007564 3.8e-107 392.9 462 45.0
Pp3c9_6720 Physcomitrium patens HOM05D005625 ORTHO05D007564 3.3e-103 379.8 509 42.4
CBR_g2823 Chara braunii HOM05D005625 ORTHO05D007564 1.5e-92 344.4 523 39.4
AagrBONN_evm.TU.Sc2ySwM_344.5166 Anthoceros agrestis HOM05D005625 ORTHO05D007564 1.3e-86 324.7 376 47.1
Atru.chr11.652 Acer truncatum HOM05D005625 ORTHO05D007564 1.1e-85 321.6 252 64.7
ClCG03G011780 Citrullus lanatus HOM05D005625 ORTHO05D007564 2.6e-79 300.4 252 59.9
SEGI_17074 Sequoiadendron giganteum HOM05D005625 ORTHO05D007564 9.1e-77 292.0 253 60.1
MCO15G211 Micromonas commoda HOM05D005625 ORTHO05D007564 5.2e-72 276.2 547 33.3
Nitab4.5_0000213g0250 Nicotiana tabacum HOM05D005625 ORTHO05D007564 6.1e-65 252.7 212 60.4
Cre02.g095113 Chlamydomonas reinhardtii HOM05D005625 ORTHO05D007564 4.8e-62 243.0 531 31.8
PRCOL_00002543 Prasinoderma coloniale HOM05D005625 ORTHO05D007564 7.0e-61 239.2 527 31.3
FAN08G2869 Fragaria x ananassa HOM05D005625 ORTHO05D007564 1.2e-60 238.4 172 70.3
ClCG03G011750 Citrullus lanatus HOM05D005625 ORTHO05D007564 5.2e-48 196.4 153 58.8
PGSC0003DMG400019987 Solanum tuberosum HOM05D005625 ORTHO05D007564 7.5e-47 192.6 174 56.9
Os05g0105300 Oryza sativa ssp. japonica HOM05D005625 ORTHO05D007564 1.8e-45 188.0 171 55.0
Glyma.15G127567 Glycine max HOM05D005625 ORTHO05D007564 7.5e-39 166.0 139 59.7
Glyma.15G127633 Glycine max HOM05D005625 ORTHO05D007564 1.4e-32 145.2 123 55.3
Solyc11g042500.3 Solanum lycopersicum HOM05D005625 ORTHO05D007564 3.9e-27 127.1 91 69.2
Peaxi162Scf00078g00534 Petunia axillaris HOM05D005625 ORTHO05D007564 6.6e-27 126.3 105 63.8
Nitab4.5_0000213g0260 Nicotiana tabacum HOM05D005625 ORTHO05D007564 7.3e-26 122.9 91 68.1
BcaB04g17633 Brassica carinata HOM05D005625 ORTHO05D007564 1.7e-22 111.7 143 44.8
Cfa026593 Carpinus fangiana HOM05D005625 ORTHO05D007564 1.7e-22 111.7 439 25.5
Nitab4.5_0001155g0020 Nicotiana tabacum HOM05D005625 ORTHO05D007564 4.1e-21 107.1 79 67.1
Hund08558 Selenicereus undatus HOM05D005625 ORTHO05D007564 9.5e-18 95.9 58 79.3
TPR.G26547 Trifolium pratense HOM05D005625 ORTHO05D022022 5.8e-15 86.7 94 44.7
ClCG03G011760 Citrullus lanatus HOM05D000004 ORTHO05D000002 8.4e-14 82.8 84 50.0
arahy.Tifrunner.gnm1.ann1.6SNM9F Arachis hypogaea HOM05D005625 ORTHO05D007564 1.6e-12 78.6 112 44.6
arahy.Tifrunner.gnm1.ann1.GWKT0Q Arachis hypogaea HOM05D005625 ORTHO05D007564 4.6e-12 77.0 114 44.7
C02p28970 Brassica napus HOM05D005625 ORTHO05D022022 8.7e-11 72.8 88 42.0
BolC2t08946H Brassica oleracea HOM05D005625 ORTHO05D022022 4.3e-10 70.5 71 45.1
A02p17310 Brassica napus HOM05D005625 ORTHO05D022022 4.8e-09 67.0 87 39.1
BraA02t06779Z Brassica rapa HOM05D005625 ORTHO05D022022 4.8e-09 67.0 87 39.1
Lsat_1_v5_gn_3_107600 Lactuca sativa HOM05D000629 ORTHO05D013393 4.0e-08 63.9 74 44.6
PSO478G1928 Papaver somniferum HOM05D005625 ORTHO05D002418 3.4e-07 60.8 69 47.8
SMO009G0022 Selaginella moellendorffii HOM05D016773 ORTHO05D019668 3.4e-07 60.8 261 25.7
Manes.09G007200 Manihot esculenta HOM05D005979 ORTHO05D007848 9.9e-07 59.3 65 46.2
Cpa.g.sc5.208 Carica papaya HOM05D005979 ORTHO05D007848 1.3e-06 58.9 65 47.7
Aqoxy2G00350 Aquilegia oxysepala HOM05D005979 ORTHO05D007848 1.7e-06 58.5 75 42.7
Glyma.05G203800 Glycine max HOM05D005979 ORTHO05D007848 1.7e-06 58.5 79 41.8
Potri.006G041400 Populus trichocarpa HOM05D005979 ORTHO05D007848 1.7e-06 58.5 65 44.6
Sabra06G0028100 Salix brachista HOM05D005979 ORTHO05D007848 1.7e-06 58.5 65 44.6
Atru.chr1.1490 Acer truncatum HOM05D005979 ORTHO05D007848 2.2e-06 58.2 66 45.5
Gohir.D13G208066 Gossypium hirsutum HOM05D000311 ORTHO05D000183 2.9e-06 57.8 216 29.2
Sopen03g028870 Solanum pennellii HOM05D005979 ORTHO05D007848 2.9e-06 57.8 65 47.7
arahy.Tifrunner.gnm1.ann1.QJV3PU Arachis hypogaea HOM05D003356 ORTHO05D086117 3.8e-06 57.4 122 38.5
Ciclev10021922m.g Citrus clementina HOM05D005979 ORTHO05D007848 3.8e-06 57.4 65 46.2
Medtr0004s0600 Medicago truncatula HOM05D005979 ORTHO05D007848 3.8e-06 57.4 65 46.2
Medtr1g051215 Medicago truncatula HOM05D005979 ORTHO05D007848 3.8e-06 57.4 65 46.2
CBR_g30186 Chara braunii HOM05D005979 ORTHO05D007848 4.9e-06 57.0 101 41.6
Gorai.013G236800 Gossypium raimondii HOM05D000311 ORTHO05D000183 4.9e-06 57.0 209 28.7
Hund26899 Selenicereus undatus HOM05D005979 ORTHO05D007848 4.9e-06 57.0 125 31.2
arahy.Tifrunner.gnm1.ann1.Y5SS6T Arachis hypogaea HOM05D005979 ORTHO05D007848 6.4e-06 56.6 65 44.6
CAN.G637.20 Capsicum annuum HOM05D005979 ORTHO05D007848 6.4e-06 56.6 65 46.2
Cpa.g.c47759 Carica papaya HOM05D005625 ORTHO05D007564 6.4e-06 56.6 49 59.2
Lalb_Chr02g0156521 Lupinus albus HOM05D005979 ORTHO05D007848 6.4e-06 56.6 65 44.6
Nitab4.5_0003715g0020 Nicotiana tabacum HOM05D005979 ORTHO05D007848 6.4e-06 56.6 78 44.9
Os04g0692100 Oryza sativa ssp. japonica HOM05D005979 ORTHO05D007848 6.4e-06 56.6 65 43.1
PGSC0003DMG400031053 Solanum tuberosum HOM05D005979 ORTHO05D007848 6.4e-06 56.6 81 43.2
TPR.G19644 Trifolium pratense HOM05D005979 ORTHO05D007848 6.4e-06 56.6 65 44.6
Zm00001eb076570 Zea mays HOM05D005979 ORTHO05D007848 6.4e-06 56.6 65 43.1
CARHR084710 Cardamine hirsuta HOM05D005979 ORTHO05D007848 8.4e-06 56.2 75 41.3
Ca_23806_v3 Cicer arietinum L. HOM05D005979 ORTHO05D007848 8.4e-06 56.2 65 44.6
Nitab4.5_0001180g0050 Nicotiana tabacum HOM05D005979 ORTHO05D007848 8.4e-06 56.2 65 46.2
TWI77G1019 Tripterygium wilfordii HOM05D005979 ORTHO05D007848 8.4e-06 56.2 65 44.6
VMungo0251G0166 Vigna mungo HOM05D005979 ORTHO05D007848 8.4e-06 56.2 65 44.6


User provided reference genes

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