Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1089G036 Amborella trichopoda HOM05D005117 ORTHO05D005956 0.0e+00 1318.9 669 100.0
MBI06_g32153_MAGBIO Magnolia biondii HOM05D005117 ORTHO05D005956 4.5e-249 864.8 609 72.2
GSVIVG01037192001 Vitis vinifera HOM05D005117 ORTHO05D005956 4.8e-243 844.7 608 71.4
CSS0010464 Camellia sinensis var. sinensis HOM05D005117 ORTHO05D005956 9.9e-241 837.0 611 70.0
Dinv22143 Davidia involucrata HOM05D005117 ORTHO05D005956 1.8e-237 826.2 606 69.5
PSO170G3068 Papaver somniferum HOM05D005117 ORTHO05D005956 3.0e-237 825.5 606 71.1
Aqoxy5G01861 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 5.6e-236 821.2 606 68.6
PSO017G2614 Papaver somniferum HOM05D005117 ORTHO05D005956 1.6e-235 819.7 606 70.5
QL09p001419 Quercus lobata HOM05D005117 ORTHO05D005956 2.1e-235 819.3 616 68.7
Actinidia23299 Actinidia chinensis HOM05D005117 ORTHO05D005956 1.1e-234 817.0 608 68.1
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 2.4e-234 815.8 608 68.6
CiPaw.03G013100 Carya illinoinensis HOM05D005117 ORTHO05D005956 4.0e-234 815.1 610 68.2
Thecc.08G180900 Theobroma cacao HOM05D005117 ORTHO05D005956 2.6e-233 812.4 610 69.0
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 3.4e-233 812.0 606 68.0
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 1.9e-231 806.2 608 67.8
arahy.Tifrunner.gnm1.ann1.T5KNPK Arachis hypogaea HOM05D005117 ORTHO05D005956 3.2e-231 805.4 617 67.4
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 5.5e-231 804.7 614 67.1
Gohir.A08G230500 Gossypium hirsutum HOM05D005117 ORTHO05D005956 1.2e-230 803.5 611 68.9
Cpa.g.sc142.12 Carica papaya HOM05D005117 ORTHO05D005956 1.6e-230 803.1 606 67.8
Gohir.D08G250900 Gossypium hirsutum HOM05D005117 ORTHO05D005956 7.9e-230 800.8 611 68.6
Gorai.004G267600 Gossypium raimondii HOM05D005117 ORTHO05D005956 7.9e-230 800.8 611 68.6
MD10G1002600 Malus domestica HOM05D005117 ORTHO05D005956 7.9e-230 800.8 608 67.8
RcHm_v2.0_Chr6g0250391 Rosa chinensis HOM05D005117 ORTHO05D005956 7.9e-230 800.8 614 66.9
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 1.0e-229 800.4 609 67.5
FvH4_2g00430 Fragaria vesca HOM05D005117 ORTHO05D005956 1.8e-229 799.7 608 67.3
Lj3g0005068 Lotus japonicus HOM05D005117 ORTHO05D005956 5.1e-229 798.1 610 66.4
TPR.G34118 Trifolium pratense HOM05D005117 ORTHO05D005956 5.1e-229 798.1 612 67.5
FAN20G0498 Fragaria x ananassa HOM05D005117 ORTHO05D005956 6.7e-229 797.7 608 67.3
Hma1.2p1_0016F.1_g010920 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 3.3e-228 795.4 606 67.5
Os02g0557600 Oryza sativa ssp. japonica HOM05D005117 ORTHO05D005956 3.3e-228 795.4 607 67.4
Potri.013G096600 Populus trichocarpa HOM05D005117 ORTHO05D005956 2.8e-227 792.3 608 65.6
Sopen11g020570 Solanum pennellii HOM05D005117 ORTHO05D005956 2.8e-227 792.3 608 66.0
ClCG11G008340 Citrullus lanatus HOM05D005117 ORTHO05D005956 6.3e-227 791.2 615 66.8
COL.COLO4_25130 Corchorus olitorius HOM05D005117 ORTHO05D005956 6.3e-227 791.2 608 67.9
Ca_13614_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 1.8e-226 789.6 611 66.3
arahy.Tifrunner.gnm1.ann1.H62643 Arachis hypogaea HOM05D005117 ORTHO05D005956 9.0e-226 787.3 607 67.4
Rhsim12G0002100 Rhododendron simsii HOM05D005117 ORTHO05D005956 2.0e-225 786.2 685 61.0
CsaV3_2G033280 Cucumis sativus L. HOM05D005117 ORTHO05D005956 3.4e-225 785.4 614 66.0
Solyc11g045120.3 Solanum lycopersicum HOM05D005117 ORTHO05D005956 3.4e-225 785.4 608 65.8
Nitab4.5_0001489g0010 Nicotiana tabacum HOM05D005117 ORTHO05D005956 5.9e-225 784.6 610 66.1
Lalb_Chr03g0033811 Lupinus albus HOM05D005117 ORTHO05D005956 1.0e-224 783.9 608 66.3
Medtr4g030200 Medicago truncatula HOM05D005117 ORTHO05D005956 1.3e-224 783.5 610 65.7
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 3.8e-224 781.9 625 65.4
CAN.G75.10 Capsicum annuum HOM05D005117 ORTHO05D005956 6.5e-224 781.2 608 65.6
Nitab4.5_0000009g0430 Nicotiana tabacum HOM05D005117 ORTHO05D005956 1.1e-223 780.4 609 66.0
SalBow7G0613 Salvia bowleyana HOM05D005117 ORTHO05D005956 1.4e-223 780.0 615 65.9
EL10Ac1g01281 Beta vulgaris HOM05D005117 ORTHO05D005956 2.5e-223 779.2 611 65.1
Cc10_g16050 Coffea canephora HOM05D005117 ORTHO05D005956 2.5e-223 779.2 606 64.5
Migut.C01395 Erythranthe guttata HOM05D005117 ORTHO05D005956 2.1e-222 776.2 607 66.9
HPP92_019134 Vanilla planifolia HOM05D005117 ORTHO05D005956 2.7e-222 775.8 606 66.0
PGSC0003DMG401019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 3.6e-222 775.4 608 65.1
Psat7g227480 Pisum sativum HOM05D005117 ORTHO05D005956 1.3e-221 773.5 613 65.1
HPP92_019136 Vanilla planifolia HOM05D005117 ORTHO05D005956 2.3e-221 772.7 608 65.6
Sed0010084 Sechium edule HOM05D005117 ORTHO05D005956 3.9e-221 771.9 610 65.4
CANSAT21G1171 Cannabis sativa HOM05D005117 ORTHO05D005956 1.6e-219 766.5 608 65.6
HanXRQChr12g0369271 Helianthus annuus HOM05D005117 ORTHO05D005956 9.1e-218 760.8 614 64.2
Hund26940 Selenicereus undatus HOM05D005117 ORTHO05D005956 3.4e-217 758.8 624 63.3
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 4.5e-217 758.4 610 65.9
Sc06g0000080 Simmondsia chinensis HOM05D005117 ORTHO05D005956 1.3e-216 756.9 611 64.0
Peaxi162Scf00078g01021 Petunia axillaris HOM05D005117 ORTHO05D005956 2.9e-216 755.7 604 65.9
ECA247G0677 Erigeron canadensis HOM05D005117 ORTHO05D005956 6.5e-216 754.6 606 63.5
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 1.2e-214 750.4 564 67.7
PGR004G2811 Punica granatum HOM05D005117 ORTHO05D005956 3.6e-214 748.8 607 62.3
THA.LOC104810302 Tarenaya hassleriana HOM05D005117 ORTHO05D005956 1.1e-212 743.8 607 62.3
Thhalv10018306m.g Eutrema salsugineum HOM05D005117 ORTHO05D005956 2.0e-212 743.0 606 62.5
Sp5g26520 Schrenkiella parvula HOM05D005117 ORTHO05D005956 2.6e-212 742.7 607 62.4
Lsat_1_v5_gn_1_24520 Lactuca sativa HOM05D005117 ORTHO05D005956 7.4e-212 741.1 645 59.8
Duzib093G1290 Durio zibethinus HOM05D005117 ORTHO05D005956 3.7e-211 738.8 581 66.6
CARHR064630 Cardamine hirsuta HOM05D005117 ORTHO05D005956 2.4e-210 736.1 608 61.8
Aa31LG4G9190 Aethionema arabicum HOM05D005117 ORTHO05D005956 5.3e-210 734.9 607 62.4
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 1.5e-209 733.4 560 67.1
Zm00001eb243900 Zea mays HOM05D005117 ORTHO05D005956 2.0e-209 733.0 608 63.2
BraA07t31328Z Brassica rapa HOM05D005117 ORTHO05D005956 2.6e-209 732.6 608 62.2
C06p45410 Brassica napus HOM05D005117 ORTHO05D005956 1.0e-208 730.7 609 62.4
AL2G31010 Arabidopsis lyrata HOM05D005117 ORTHO05D005956 3.8e-208 728.8 607 61.6
BcaC08g46567 Brassica carinata HOM05D005117 ORTHO05D005956 5.0e-208 728.4 609 62.1
AT1G71350 Arabidopsis thaliana HOM05D005117 ORTHO05D005956 1.1e-207 727.2 607 61.3
BolC6t39599H Brassica oleracea HOM05D005117 ORTHO05D005956 1.4e-207 726.9 609 61.9
Carub.0002s1821 Capsella rubella HOM05D005117 ORTHO05D005956 1.9e-207 726.5 607 61.3
A07p37640 Brassica napus HOM05D005117 ORTHO05D005956 7.2e-207 724.5 610 61.6
Eucgr.A01322 Eucalyptus grandis HOM05D005117 ORTHO05D005956 6.1e-206 721.5 557 64.8
Sabra13G0082800 Salix brachista HOM05D005117 ORTHO05D005956 1.8e-205 719.9 740 54.1
BcaB03g14892 Brassica carinata HOM05D005117 ORTHO05D005956 3.0e-205 719.2 608 61.2
Ah.05g170440 Amaranthus hybridus HOM05D005117 ORTHO05D005956 7.0e-202 708.0 609 61.6
Glyma.12G241600 Glycine max HOM05D005117 ORTHO05D005956 7.0e-202 708.0 541 66.9
CDE05G1166 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 4.5e-201 705.3 604 62.4
MELO3C008099.2 Cucumis melo HOM05D005117 ORTHO05D005956 3.0e-197 692.6 547 66.2
Aqoxy5G01859 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 1.7e-195 686.8 610 60.5
SMO364G0365 Selaginella moellendorffii HOM05D005117 ORTHO05D005956 1.7e-192 676.8 614 58.5
Prupe.8G004200 Prunus persica HOM05D005117 ORTHO05D005956 7.5e-180 634.8 495 67.1
SEGI_03298 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 2.6e-172 609.8 530 60.8
unitig_37.g13073 Utricularia gibba HOM05D005117 ORTHO05D005956 1.3e-168 597.4 607 54.5
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 6.6e-168 595.1 672 47.5
vmacro00946 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 1.3e-163 580.9 681 51.0
vmacro00947 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 1.8e-157 560.5 509 59.5
AagrBONN_evm.TU.Sc2ySwM_340.48 Anthoceros agrestis HOM05D005117 ORTHO05D005956 1.9e-154 550.4 496 58.5
TAR381G0825 Trochodendron aralioides HOM05D005117 ORTHO05D005956 4.6e-137 492.7 363 70.8
Atru.chr13.2570 Acer truncatum HOM05D005117 ORTHO05D005956 9.9e-132 474.9 379 65.4
Hma1.2p1_0016F.1_g010930 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 1.3e-131 474.6 355 67.9
RcHm_v2.0_Chr6g0249701 Rosa chinensis HOM05D005117 ORTHO05D005956 2.3e-128 463.8 377 63.4
Haze_13981 Corylus avellana HOM05D005117 ORTHO05D005956 4.6e-121 439.5 363 63.1
SHI04053 Sapria himalayana HOM05D005117 ORTHO05D005956 2.1e-118 430.6 440 55.2
Cre06.g303650 Chlamydomonas reinhardtii HOM05D005117 ORTHO05D005956 9.3e-106 388.7 644 38.4
SGA_v2.0_scaffold443G51687 Striga asiatica HOM05D005117 ORTHO05D005956 1.2e-100 371.7 325 60.9
RcHm_v2.0_Chr6g0250211 Rosa chinensis HOM05D005117 ORTHO05D005956 6.5e-99 365.9 377 53.8
Ca_30189_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 1.4e-93 348.2 248 71.0
Haze_13982 Corylus avellana HOM05D005117 ORTHO05D005956 1.8e-93 347.8 247 68.8
vmacro00948 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 1.6e-89 334.7 247 68.4
Atru.chr13.2543 Acer truncatum HOM05D005117 ORTHO05D005956 2.0e-84 317.8 235 68.9
PGSC0003DMG402019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 9.7e-79 298.9 222 66.7
MCO13G430 Micromonas commoda HOM05D005117 ORTHO05D005956 1.0e-75 288.9 624 35.1
Atru.chr13.2569 Acer truncatum HOM05D005117 ORTHO05D005956 1.9e-74 284.6 179 75.4
RcHm_v2.0_Chr6g0249901 Rosa chinensis HOM05D005117 ORTHO05D005956 3.3e-58 230.7 220 56.8
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 3.0e-56 224.2 172 69.2
RcHm_v2.0_Chr6g0250191 Rosa chinensis HOM05D005117 ORTHO05D005956 1.7e-54 218.4 236 52.1
Zm00001eb084470 Zea mays HOM05D005117 ORTHO05D005956 2.3e-51 208.0 159 64.2
RcHm_v2.0_Chr6g0250001 Rosa chinensis HOM05D005117 ORTHO05D005956 5.4e-45 186.8 109 82.6
RcHm_v2.0_Chr6g0250151 Rosa chinensis HOM05D005117 ORTHO05D005956 2.7e-44 184.5 106 83.0
RcHm_v2.0_Chr6g0249891 Rosa chinensis HOM05D005117 ORTHO05D005956 3.1e-40 171.0 101 85.1
FAN24G1044 Fragaria x ananassa HOM05D005117 ORTHO05D005956 7.5e-39 166.4 101 85.1
RcHm_v2.0_Chr6g0250171 Rosa chinensis HOM05D005117 ORTHO05D005956 9.9e-39 166.0 101 84.2
RcHm_v2.0_Chr6g0249861 Rosa chinensis HOM05D005117 ORTHO05D005956 6.4e-38 163.3 130 68.5
AUR62038541 Chenopodium quinoa HOM05D005117 ORTHO05D005956 9.2e-37 159.5 101 77.2
RcHm_v2.0_Chr6g0250321 Rosa chinensis HOM05D005117 ORTHO05D005956 4.7e-33 147.1 100 77.0
SHI04054 Sapria himalayana HOM05D005117 ORTHO05D005956 4.7e-33 147.1 104 65.4
RcHm_v2.0_Chr6g0249761 Rosa chinensis HOM05D005117 ORTHO05D005956 3.2e-29 134.4 83 77.1
RcHm_v2.0_Chr6g0249251 Rosa chinensis HOM05D005117 ORTHO05D005956 7.8e-28 129.8 131 51.9
Rhsim03G0007800 Rhododendron simsii HOM05D000003 ORTHO05D005956 9.6e-26 122.9 134 51.5
AagrBONN_evm.TU.Sc2ySwM_340.40 Anthoceros agrestis HOM05D005117 ORTHO05D005956 1.8e-24 118.6 83 66.3
FAN27G2074 Fragaria x ananassa HOM05D005117 ORTHO05D005956 6.9e-24 116.7 82 67.1
RcHm_v2.0_Chr6g0249981 Rosa chinensis HOM05D005117 ORTHO05D005956 9.0e-24 116.3 70 84.3
RcHm_v2.0_Chr6g0249991 Rosa chinensis HOM05D005117 ORTHO05D005956 2.9e-22 111.3 131 47.3
A06p32710 Brassica napus HOM05D005117 ORTHO05D005956 6.4e-22 110.2 81 60.5
BraA06t26200Z Brassica rapa HOM05D005117 ORTHO05D005956 6.4e-22 110.2 81 60.5
RcHm_v2.0_Chr6g0250221 Rosa chinensis HOM05D005117 ORTHO05D005956 8.4e-22 109.8 66 78.8
RcHm_v2.0_Chr6g0249911 Rosa chinensis HOM05D005117 ORTHO05D005956 9.3e-21 106.3 71 69.0
Cfa026610 Carpinus fangiana HOM05D005117 ORTHO05D005956 2.4e-16 91.7 510 22.4
CDE05G1587 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 2.4e-16 91.7 148 41.9
RcHm_v2.0_Chr6g0249871 Rosa chinensis HOM05D005117 ORTHO05D005956 2.4e-16 91.7 55 72.7
RcHm_v2.0_Chr6g0249791 Rosa chinensis HOM05D005117 ORTHO05D005956 7.1e-13 80.1 55 70.9
Rhsim09G0011400 Rhododendron simsii HOM05D005117 ORTHO05D005956 2.1e-12 78.6 54 72.2
RcHm_v2.0_Chr6g0249851 Rosa chinensis HOM05D005117 ORTHO05D005956 1.1e-10 72.8 41 78.0
Thecc.05G315300 Theobroma cacao HOM05D005943 ORTHO05D007328 1.1e-10 72.8 182 28.0
Duzib128G1848 Durio zibethinus HOM05D005943 ORTHO05D007328 3.3e-10 71.2 182 28.0
SEGI_33948 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 6.2e-09 67.0 53 67.9
SHI04055 Sapria himalayana HOM05D005117 ORTHO05D005956 6.9e-08 63.5 45 71.1
RcHm_v2.0_Chr6g0249261 Rosa chinensis HOM05D005117 ORTHO05D005956 4.9e-06 57.4 41 68.3


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