Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1041G001 Amborella trichopoda HOM05D002880 ORTHO05D003450 7.8e-109 397.1 198 100.0
ATR0630G005 Amborella trichopoda HOM05D002880 ORTHO05D003450 8.6e-108 393.7 198 99.0
MBI14_g08214_MAGBIO Magnolia biondii HOM05D002880 ORTHO05D003450 6.6e-100 367.5 198 89.4
Aqoxy5G01784 Aquilegia oxysepala HOM05D002880 ORTHO05D003450 1.1e-97 360.1 198 86.9
Nn5g30154 Nelumbo nucifera HOM05D002880 ORTHO05D003450 1.8e-97 359.4 198 86.9
Sed0017656 Sechium edule HOM05D002880 ORTHO05D003450 2.3e-97 359.0 198 86.9
Duzib187G1438 Durio zibethinus HOM05D002880 ORTHO05D003450 3.1e-97 358.6 198 87.4
Sed0027366 Sechium edule HOM05D002880 ORTHO05D003450 3.1e-97 358.6 198 87.4
ClCG01G020300 Citrullus lanatus HOM05D002880 ORTHO05D003450 4.0e-97 358.2 198 86.9
Haze_03765 Corylus avellana HOM05D002880 ORTHO05D003450 4.0e-97 358.2 198 87.4
MELO3C007903.2 Cucumis melo HOM05D002880 ORTHO05D003450 4.0e-97 358.2 198 86.9
CsaV3_6G047090 Cucumis sativus L. HOM05D002880 ORTHO05D003450 4.0e-97 358.2 198 86.9
Gohir.D03G009500 Gossypium hirsutum HOM05D002880 ORTHO05D003450 5.2e-97 357.8 198 86.4
Gohir.D11G183100 Gossypium hirsutum HOM05D002880 ORTHO05D003450 5.2e-97 357.8 198 87.4
Gorai.003G009700 Gossypium raimondii HOM05D002880 ORTHO05D003450 5.2e-97 357.8 198 86.4
Gorai.007G195100 Gossypium raimondii HOM05D002880 ORTHO05D003450 5.2e-97 357.8 198 87.4
PSO541G3550 Papaver somniferum HOM05D002880 ORTHO05D003450 5.2e-97 357.8 198 86.4
PSO675G2090 Papaver somniferum HOM05D002880 ORTHO05D003450 5.2e-97 357.8 198 86.4
QL06p032741 Quercus lobata HOM05D002880 ORTHO05D003450 5.2e-97 357.8 198 87.4
GSVIVG01018783001 Vitis vinifera HOM05D002880 ORTHO05D003450 6.8e-97 357.5 198 87.4
Ca_25825_v3 Cicer arietinum L. HOM05D002880 ORTHO05D003450 8.9e-97 357.1 198 85.9
TPR.G18181 Trifolium pratense HOM05D002880 ORTHO05D003450 8.9e-97 357.1 198 85.9
Medtr5g022000 Medicago truncatula HOM05D002880 ORTHO05D003450 1.2e-96 356.7 198 85.4
Thecc.01G019100 Theobroma cacao HOM05D002880 ORTHO05D003450 1.2e-96 356.7 198 86.9
Glyma.01G166400 Glycine max HOM05D002880 ORTHO05D003450 2.0e-96 355.9 198 85.9
Atru.chr1.3786 Acer truncatum HOM05D002880 ORTHO05D003450 4.4e-96 354.8 198 86.4
MD02G1132600 Malus domestica HOM05D002880 ORTHO05D003450 4.4e-96 354.8 198 85.9
MD15G1245900 Malus domestica HOM05D002880 ORTHO05D003450 4.4e-96 354.8 198 85.9
Prupe.7G168000 Prunus persica HOM05D002880 ORTHO05D003450 4.4e-96 354.8 198 85.9
Potri.005G114300 Populus trichocarpa HOM05D002880 ORTHO05D003450 5.8e-96 354.4 198 86.4
THA.LOC104804262 Tarenaya hassleriana HOM05D002880 ORTHO05D003450 5.8e-96 354.4 197 86.8
TWI09G0522 Tripterygium wilfordii HOM05D002880 ORTHO05D003450 5.8e-96 354.4 198 86.4
Duzib147G0886 Durio zibethinus HOM05D002880 ORTHO05D003450 7.6e-96 354.0 198 87.4
Gohir.A02G170600 Gossypium hirsutum HOM05D002880 ORTHO05D003450 7.6e-96 354.0 198 85.9
Sc07g0000970 Simmondsia chinensis HOM05D002880 ORTHO05D003450 7.6e-96 354.0 198 85.4
TAR625G0893 Trochodendron aralioides HOM05D002880 ORTHO05D003450 7.6e-96 354.0 198 86.4
HanXRQChr14g0441401 Helianthus annuus HOM05D002880 ORTHO05D003450 9.9e-96 353.6 198 85.9
Peaxi162Scf00083g00425 Petunia axillaris HOM05D002880 ORTHO05D003450 9.9e-96 353.6 198 85.4
CANSAT01G1381 Cannabis sativa HOM05D002880 ORTHO05D003450 1.3e-95 353.2 198 85.4
Glyma.11G077000 Glycine max HOM05D002880 ORTHO05D003450 1.3e-95 353.2 198 85.4
Phvul.002G108900 Phaseolus vulgaris HOM05D002880 ORTHO05D003450 1.7e-95 352.8 198 85.9
AL3G50950 Arabidopsis lyrata HOM05D002880 ORTHO05D003450 2.2e-95 352.4 198 85.4
AT2G17930 Arabidopsis thaliana HOM05D002880 ORTHO05D003450 2.2e-95 352.4 198 85.4
CARHR108410 Cardamine hirsuta HOM05D002880 ORTHO05D003450 2.2e-95 352.4 198 85.4
CiPaw.07G058400 Carya illinoinensis HOM05D002880 ORTHO05D003450 2.2e-95 352.4 198 85.9
Ciclev10024677m.g Citrus clementina HOM05D002880 ORTHO05D003450 2.2e-95 352.4 198 85.9
COL.COLO4_21911 Corchorus olitorius HOM05D002880 ORTHO05D003450 2.2e-95 352.4 198 85.4
Sabra05G0093500 Salix brachista HOM05D002880 ORTHO05D003450 2.2e-95 352.4 198 85.9
Solyc02g083900.3 Solanum lycopersicum HOM05D002880 ORTHO05D003450 2.2e-95 352.4 198 84.8
Sopen02g028690 Solanum pennellii HOM05D002880 ORTHO05D003450 2.2e-95 352.4 198 84.8
Carub.0003s3206 Capsella rubella HOM05D002880 ORTHO05D003450 2.9e-95 352.1 198 84.8
THA.LOC104819750 Tarenaya hassleriana HOM05D002880 ORTHO05D003450 2.9e-95 352.1 198 85.4
FvH4_1g11860 Fragaria vesca HOM05D002880 ORTHO05D003450 3.7e-95 351.7 198 85.4
FAN23G1788 Fragaria x ananassa HOM05D002880 ORTHO05D003450 3.7e-95 351.7 198 85.4
Dinv40086 Davidia involucrata HOM05D002880 ORTHO05D003450 4.9e-95 351.3 198 85.9
Aa31LG8G15100 Aethionema arabicum HOM05D002880 ORTHO05D003450 6.4e-95 350.9 198 85.4
Psat2g154720 Pisum sativum HOM05D002880 ORTHO05D003450 6.4e-95 350.9 198 84.8
BcaB08g34776 Brassica carinata HOM05D002880 ORTHO05D003450 8.4e-95 350.5 198 84.8
A06p33500 Brassica napus HOM05D002880 ORTHO05D003450 8.4e-95 350.5 198 84.8
BraA06t26284Z Brassica rapa HOM05D002880 ORTHO05D003450 8.4e-95 350.5 198 84.8
CAN.G1671.12 Capsicum annuum HOM05D002880 ORTHO05D003450 8.4e-95 350.5 198 84.3
Sp3g31350 Schrenkiella parvula HOM05D002880 ORTHO05D003450 8.4e-95 350.5 198 84.8
A09p11620 Brassica napus HOM05D002880 ORTHO05D003450 1.1e-94 350.1 198 84.8
BraA09t36808Z Brassica rapa HOM05D002880 ORTHO05D003450 1.1e-94 350.1 198 84.8
FAN19G0100 Fragaria x ananassa HOM05D002880 ORTHO05D003450 1.1e-94 350.1 198 84.8
Manes.01G145600 Manihot esculenta HOM05D002880 ORTHO05D003450 1.1e-94 350.1 198 85.4
Thhalv10022516m.g Eutrema salsugineum HOM05D002880 ORTHO05D003450 1.4e-94 349.7 198 84.3
EL10Ac6g15479 Beta vulgaris HOM05D002880 ORTHO05D003450 1.9e-94 349.4 198 85.4
RcHm_v2.0_Chr2g0099461 Rosa chinensis HOM05D002880 ORTHO05D003450 1.9e-94 349.4 198 84.3
BcaB07g31700 Brassica carinata HOM05D002880 ORTHO05D003450 2.4e-94 349.0 198 84.3
HanXRQChr13g0414661 Helianthus annuus HOM05D002880 ORTHO05D003450 2.4e-94 349.0 198 84.3
Nitab4.5_0003382g0060 Nicotiana tabacum HOM05D002880 ORTHO05D003450 2.4e-94 349.0 198 84.3
BcaC04g22939 Brassica carinata HOM05D002880 ORTHO05D003450 4.1e-94 348.2 198 83.8
C09p13660 Brassica napus HOM05D002880 ORTHO05D003450 4.1e-94 348.2 198 83.8
BolC9t54256H Brassica oleracea HOM05D002880 ORTHO05D003450 4.1e-94 348.2 198 83.8
C03p58840 Brassica napus HOM05D002880 ORTHO05D003450 5.4e-94 347.8 198 84.3
BolC3t18143H Brassica oleracea HOM05D002880 ORTHO05D003450 5.4e-94 347.8 198 84.3
FAN28G1007 Fragaria x ananassa HOM05D002880 ORTHO05D003450 5.4e-94 347.8 198 84.3
FAN26G2624 Fragaria x ananassa HOM05D002880 ORTHO05D003450 7.1e-94 347.4 198 84.3
Lalb_Chr09g0321751 Lupinus albus HOM05D002880 ORTHO05D003450 7.1e-94 347.4 198 83.3
arahy.Tifrunner.gnm1.ann1.E76U4D Arachis hypogaea HOM05D002880 ORTHO05D003450 1.2e-93 346.7 198 84.3
arahy.Tifrunner.gnm1.ann1.FN5NT6 Arachis hypogaea HOM05D002880 ORTHO05D003450 1.2e-93 346.7 198 84.3
Lalb_Chr16g0377511 Lupinus albus HOM05D002880 ORTHO05D003450 1.6e-93 346.3 198 83.8
SalBow3G1624 Salvia bowleyana HOM05D002880 ORTHO05D003450 2.1e-93 345.9 198 83.8
DCAR_025997 Daucus carota HOM05D002880 ORTHO05D003450 2.7e-93 345.5 198 84.3
Lsat_1_v5_gn_2_75940 Lactuca sativa HOM05D002880 ORTHO05D003450 2.7e-93 345.5 198 83.8
CSS0038464 Camellia sinensis var. sinensis HOM05D002880 ORTHO05D003450 3.5e-93 345.1 198 83.3
CSS0040827 Camellia sinensis var. sinensis HOM05D002880 ORTHO05D003450 3.5e-93 345.1 198 83.3
AUR62003370 Chenopodium quinoa HOM05D002880 ORTHO05D003450 3.5e-93 345.1 198 83.8
AUR62029462 Chenopodium quinoa HOM05D002880 ORTHO05D003450 3.5e-93 345.1 198 83.8
Lj2g0011330 Lotus japonicus HOM05D002880 ORTHO05D003450 3.5e-93 345.1 198 83.3
vmacro21922 Vaccinium macrocarpon HOM05D002880 ORTHO05D003450 3.5e-93 345.1 198 85.4
vmacro23248 Vaccinium macrocarpon HOM05D002880 ORTHO05D003450 3.5e-93 345.1 198 85.4
Actinidia17445 Actinidia chinensis HOM05D002880 ORTHO05D003450 4.6e-93 344.7 198 83.8
CARHR244480 Cardamine hirsuta HOM05D002880 ORTHO05D003450 4.6e-93 344.7 198 83.3
Migut.H01155 Erythranthe guttata HOM05D002880 ORTHO05D003450 4.6e-93 344.7 198 83.8
Potri.007G057900 Populus trichocarpa HOM05D002880 ORTHO05D003450 4.6e-93 344.7 198 83.8
Aa31LG6G13030 Aethionema arabicum HOM05D002880 ORTHO05D003450 6.0e-93 344.4 198 82.8
AT4G36080 Arabidopsis thaliana HOM05D002880 ORTHO05D003450 1.7e-92 342.8 198 82.8
ECA238G3174 Erigeron canadensis HOM05D002880 ORTHO05D003450 2.3e-92 342.4 198 83.3
AL7G14960 Arabidopsis lyrata HOM05D002880 ORTHO05D003450 3.9e-92 341.7 198 82.3
PGR119G1290 Punica granatum HOM05D002880 ORTHO05D003450 5.1e-92 341.3 198 83.8
SGA_v2.0_scaffold78G25389 Striga asiatica HOM05D002880 ORTHO05D003450 5.1e-92 341.3 198 82.8
Zm00001eb329250 Zea mays HOM05D002880 ORTHO05D003450 5.1e-92 341.3 198 80.8
MSTRG.2713 Avicennia marina HOM05D002880 ORTHO05D003450 6.6e-92 340.9 198 82.3
Cc07_g10710 Coffea canephora HOM05D002880 ORTHO05D003450 8.6e-92 340.5 198 82.8
Eucgr.I02351 Eucalyptus grandis HOM05D002880 ORTHO05D003450 1.1e-91 340.1 198 82.8
Thhalv10024177m.g Eutrema salsugineum HOM05D002880 ORTHO05D003450 1.5e-91 339.7 198 81.8
Sp7g33860 Schrenkiella parvula HOM05D002880 ORTHO05D003450 2.5e-91 339.0 198 80.8
AagrBONN_evm.TU.Sc2ySwM_368.861 Anthoceros agrestis HOM05D002880 ORTHO05D003450 1.2e-90 336.7 198 83.3
Mapoly0010s0094 Marchantia polymorpha HOM05D002880 ORTHO05D003450 6.2e-90 334.3 198 82.8
Carub.0007s0415 Capsella rubella HOM05D002880 ORTHO05D003450 1.1e-89 333.6 198 80.3
TAR381G0408 Trochodendron aralioides HOM05D002880 ORTHO05D003450 2.4e-89 332.4 198 81.8
A01p02660 Brassica napus HOM05D002880 ORTHO05D003450 5.2e-89 331.3 198 79.3
BraA01t00252Z Brassica rapa HOM05D002880 ORTHO05D003450 5.2e-89 331.3 198 79.3
Oeu005318.1 Olea europaea HOM05D002880 ORTHO05D003450 8.9e-89 330.5 198 79.8
BcaNung00767 Brassica carinata HOM05D002880 ORTHO05D003450 2.6e-88 328.9 198 78.8
C01p02960 Brassica napus HOM05D002880 ORTHO05D003450 2.6e-88 328.9 198 78.8
BolC1t00282H Brassica oleracea HOM05D002880 ORTHO05D003450 2.6e-88 328.9 198 78.8
SHI08553 Sapria himalayana HOM05D002880 ORTHO05D003450 3.8e-87 325.1 198 78.8
SMO147G0347 Selaginella moellendorffii HOM05D002880 ORTHO05D003450 2.1e-85 319.3 198 78.8
Pp3c17_20000 Physcomitrium patens HOM05D002880 ORTHO05D003450 3.5e-85 318.5 198 78.8
Lj6g0023005 Lotus japonicus HOM05D002880 ORTHO05D003450 1.8e-81 306.2 198 73.2
Sabra07G0049600 Salix brachista HOM05D002880 ORTHO05D003450 1.3e-79 300.1 165 86.1
Cfa006971 Carpinus fangiana HOM05D002880 ORTHO05D003450 6.9e-73 277.7 195 72.3
Hund16489 Selenicereus undatus HOM05D002880 ORTHO05D003450 8.4e-71 270.8 194 70.6
Lj2C468G7 Lonicera japonica HOM05D002880 ORTHO05D003450 5.5e-70 268.1 197 70.6
CBR_g31691 Chara braunii HOM05D002880 ORTHO05D003450 3.5e-69 265.4 213 62.9
Gohir.A11G175500 Gossypium hirsutum HOM05D002880 ORTHO05D003450 1.0e-68 263.8 140 90.0
HPP92_000450 Vanilla planifolia HOM05D002880 ORTHO05D003450 3.7e-66 255.4 155 76.8
Cpa.g.sc6.249 Carica papaya HOM05D002880 ORTHO05D003450 1.3e-52 210.3 124 80.6
MCO16G028 Micromonas commoda HOM05D002880 ORTHO05D003450 5.9e-48 194.9 205 47.3
unitig_0.g3 Utricularia gibba HOM05D002880 ORTHO05D003450 1.0e-47 194.1 174 58.6
PRCOL_00005144 Prasinoderma coloniale HOM05D002880 ORTHO05D003450 2.2e-47 193.0 201 47.3
Psat4g093120 Pisum sativum HOM05D002880 ORTHO05D003450 1.5e-40 170.2 99 83.8
Cre02.g088750 Chlamydomonas reinhardtii HOM05D002880 ORTHO05D003450 3.0e-36 156.0 197 42.1
vmacro23472 Vaccinium macrocarpon HOM05D002880 ORTHO05D003450 1.2e-21 107.5 108 57.4
Atru.chr1.4017 Acer truncatum HOM05D002880 ORTHO05D003450 1.6e-08 63.9 29 96.6
Cfa023980 Carpinus fangiana HOM05D002880 ORTHO05D003450 2.7e-08 63.2 206 22.8


User provided reference genes

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