Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0980G001 Amborella trichopoda HOM05D005112 ORTHO05D006681 7.1e-169 597.0 276 100.0
ATR0745G067 Amborella trichopoda HOM05D005112 ORTHO05D006681 1.1e-108 397.1 208 89.4
Aqoxy2G00366 Aquilegia oxysepala HOM05D005112 ORTHO05D006681 6.4e-85 318.2 208 70.2
CiPaw.13G013600 Carya illinoinensis HOM05D005112 ORTHO05D006681 7.1e-84 314.7 208 69.7
Nn7g36668 Nelumbo nucifera HOM05D005112 ORTHO05D006681 1.2e-83 313.9 217 67.3
PSO339G5424 Papaver somniferum HOM05D005112 ORTHO05D006681 7.8e-83 311.2 217 66.4
Atru.chr12.1339 Acer truncatum HOM05D005112 ORTHO05D006681 1.0e-82 310.8 206 69.4
Actinidia02264 Actinidia chinensis HOM05D005112 ORTHO05D006681 1.1e-81 307.4 208 68.8
TAR636G0153 Trochodendron aralioides HOM05D005112 ORTHO05D006681 1.1e-81 307.4 208 68.8
Dinv32028 Davidia involucrata HOM05D005112 ORTHO05D006681 1.5e-81 307.0 208 68.3
MD02G1287500 Malus domestica HOM05D005112 ORTHO05D006681 1.5e-81 307.0 208 68.8
TAR636G2362 Trochodendron aralioides HOM05D005112 ORTHO05D006681 7.3e-81 304.7 208 68.3
GSVIVG01013489001 Vitis vinifera HOM05D005112 ORTHO05D006681 1.2e-80 303.9 208 68.3
Hma1.2p1_1202F.1_g266810 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 1.6e-80 303.5 208 67.3
Hma1.2p1_1202F.1_g266830 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 1.6e-80 303.5 208 67.3
Ciclev10027821m.g Citrus clementina HOM05D005112 ORTHO05D006681 3.6e-80 302.4 208 68.3
HanXRQChr14g0446561 Helianthus annuus HOM05D005112 ORTHO05D006681 6.2e-80 301.6 208 65.9
Lsat_1_v5_gn_2_64381 Lactuca sativa HOM05D005112 ORTHO05D006681 6.2e-80 301.6 210 65.7
Cc02_g30230 Coffea canephora HOM05D005112 ORTHO05D006681 1.8e-79 300.1 208 65.9
FvH4_7g03060 Fragaria vesca HOM05D005112 ORTHO05D006681 3.1e-79 299.3 208 66.8
Cfa010916 Carpinus fangiana HOM05D005112 ORTHO05D006681 4.0e-79 298.9 208 65.9
Manes.04G159700 Manihot esculenta HOM05D005112 ORTHO05D006681 4.0e-79 298.9 208 66.3
Sabra01G0019900 Salix brachista HOM05D005112 ORTHO05D006681 6.9e-79 298.1 208 67.3
TWI38G0195 Tripterygium wilfordii HOM05D005112 ORTHO05D006681 9.0e-79 297.7 217 64.1
CSS0041800 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 1.2e-78 297.4 208 68.3
Migut.B01228 Erythranthe guttata HOM05D005112 ORTHO05D006681 1.2e-78 297.4 208 65.4
RcHm_v2.0_Chr1g0324261 Rosa chinensis HOM05D005112 ORTHO05D006681 1.2e-78 297.4 208 66.3
QL04p017903 Quercus lobata HOM05D005112 ORTHO05D006681 2.6e-78 296.2 208 67.3
FAN03G1408 Fragaria x ananassa HOM05D005112 ORTHO05D006681 3.4e-78 295.8 208 65.9
Potri.001G027400 Populus trichocarpa HOM05D005112 ORTHO05D006681 3.4e-78 295.8 208 65.9
Prupe.2G035800 Prunus persica HOM05D005112 ORTHO05D006681 4.4e-78 295.4 208 63.5
FAN10G2928 Fragaria x ananassa HOM05D005112 ORTHO05D006681 5.8e-78 295.0 208 65.9
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 5.8e-78 295.0 208 66.3
Eucgr.J01181 Eucalyptus grandis HOM05D005112 ORTHO05D006681 7.6e-78 294.7 208 66.8
Potri.003G196500 Populus trichocarpa HOM05D005112 ORTHO05D006681 1.3e-77 293.9 208 65.4
Thecc.10G157000 Theobroma cacao HOM05D005112 ORTHO05D006681 1.3e-77 293.9 208 65.9
EL10Ac2g02802 Beta vulgaris HOM05D005112 ORTHO05D006681 2.9e-77 292.7 208 63.9
Cpa.g.sc540.3 Carica papaya HOM05D005112 ORTHO05D006681 3.8e-77 292.4 208 65.4
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 3.8e-77 292.4 215 64.7
Sc14g0005780 Simmondsia chinensis HOM05D005112 ORTHO05D006681 3.8e-77 292.4 208 65.9
Prupe.2G035600 Prunus persica HOM05D005112 ORTHO05D006681 4.9e-77 292.0 208 63.0
CANSAT56G3144 Cannabis sativa HOM05D005112 ORTHO05D006681 6.4e-77 291.6 208 65.4
Duzib114G0621 Durio zibethinus HOM05D005112 ORTHO05D006681 8.4e-77 291.2 208 64.9
Sed0008595 Sechium edule HOM05D005112 ORTHO05D006681 8.4e-77 291.2 217 60.4
Psat4g144800 Pisum sativum HOM05D005112 ORTHO05D006681 1.1e-76 290.8 208 63.5
vmacro12696 Vaccinium macrocarpon HOM05D005112 ORTHO05D006681 1.1e-76 290.8 219 65.3
Gohir.A06G175300 Gossypium hirsutum HOM05D005112 ORTHO05D006681 1.9e-76 290.0 208 63.5
PGR044G1764 Punica granatum HOM05D005112 ORTHO05D006681 1.9e-76 290.0 208 63.5
Peaxi162Scf00767g00521 Petunia axillaris HOM05D005112 ORTHO05D006681 2.4e-76 289.7 208 66.3
Glyma.13G197000 Glycine max HOM05D005112 ORTHO05D006681 4.2e-76 288.9 208 63.0
unitig_22.g5425 Utricularia gibba HOM05D005112 ORTHO05D006681 1.2e-75 287.3 210 63.3
VMungo1127G0803 Vigna mungo HOM05D005112 ORTHO05D006681 1.2e-75 287.3 208 62.5
Lj3g0016153 Lotus japonicus HOM05D005112 ORTHO05D006681 3.5e-75 285.8 208 63.0
TPR.G27820 Trifolium pratense HOM05D005112 ORTHO05D006681 6.0e-75 285.0 208 63.0
Sabra03G0146500 Salix brachista HOM05D005112 ORTHO05D006681 1.0e-74 284.3 208 63.9
AUR62032651 Chenopodium quinoa HOM05D005112 ORTHO05D006681 1.3e-74 283.9 208 63.5
ClCG05G026800 Citrullus lanatus HOM05D005112 ORTHO05D006681 1.3e-74 283.9 217 59.0
DCAR_006636 Daucus carota HOM05D005112 ORTHO05D006681 1.3e-74 283.9 217 60.4
Gohir.D06G185100 Gossypium hirsutum HOM05D005112 ORTHO05D006681 1.3e-74 283.9 208 63.0
AUR62026862 Chenopodium quinoa HOM05D005112 ORTHO05D006681 2.3e-74 283.1 208 63.5
MSTRG.20515 Avicennia marina HOM05D005112 ORTHO05D006681 3.0e-74 282.7 208 62.0
Gorai.010G216500 Gossypium raimondii HOM05D005112 ORTHO05D006681 3.0e-74 282.7 208 62.5
Medtr8g039160 Medicago truncatula HOM05D005112 ORTHO05D006681 3.0e-74 282.7 208 62.0
Ca_23958_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 5.1e-74 282.0 208 62.5
Ca_30885_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 5.1e-74 282.0 208 62.5
Phvul.011G206800 Phaseolus vulgaris HOM05D005112 ORTHO05D006681 6.6e-74 281.6 208 61.5
Sp5g07980 Schrenkiella parvula HOM05D005112 ORTHO05D006681 6.6e-74 281.6 208 62.5
COL.COLO4_20752 Corchorus olitorius HOM05D005112 ORTHO05D006681 8.7e-74 281.2 208 63.0
Os01g0952600 Oryza sativa ssp. japonica HOM05D005112 ORTHO05D006681 8.7e-74 281.2 208 61.5
A04p05380 Brassica napus HOM05D005112 ORTHO05D006681 1.9e-73 280.0 208 62.5
BcaB02g08488 Brassica carinata HOM05D005112 ORTHO05D006681 2.5e-73 279.6 208 62.5
BcaC02g09069 Brassica carinata HOM05D005112 ORTHO05D006681 3.3e-73 279.3 208 62.0
BolC4t25382H Brassica oleracea HOM05D005112 ORTHO05D006681 3.3e-73 279.3 208 62.0
Thhalv10010080m.g Eutrema salsugineum HOM05D005112 ORTHO05D006681 5.6e-73 278.5 208 62.0
C04p38070 Brassica napus HOM05D005112 ORTHO05D006681 7.3e-73 278.1 208 61.5
Carub.0005s2104 Capsella rubella HOM05D005112 ORTHO05D006681 7.3e-73 278.1 208 62.0
CsaV3_5G036760 Cucumis sativus L. HOM05D005112 ORTHO05D006681 7.3e-73 278.1 217 58.1
Nitab4.5_0002123g0040 Nicotiana tabacum HOM05D005112 ORTHO05D006681 7.3e-73 278.1 208 63.9
Mapoly0086s0033 Marchantia polymorpha HOM05D005112 ORTHO05D006681 1.6e-72 276.9 208 59.6
BraA04t16238Z Brassica rapa HOM05D005112 ORTHO05D006681 2.1e-72 276.6 208 61.5
AL5G35490 Arabidopsis lyrata HOM05D005112 ORTHO05D006681 3.6e-72 275.8 208 61.5
MBI09_g12849_MAGBIO Magnolia biondii HOM05D005112 ORTHO05D006681 4.8e-72 275.4 208 64.9
AT3G54440 Arabidopsis thaliana HOM05D005112 ORTHO05D006681 3.1e-71 272.7 208 61.1
Lalb_Chr01g0007751 Lupinus albus HOM05D005112 ORTHO05D006681 4.0e-71 272.3 208 60.6
THA.LOC104824194 Tarenaya hassleriana HOM05D005112 ORTHO05D006681 9.0e-71 271.2 208 59.6
Zm00001eb140720 Zea mays HOM05D005112 ORTHO05D006681 1.5e-70 270.4 208 59.1
SGA_v2.0_scaffold124G33611 Striga asiatica HOM05D005112 ORTHO05D006681 1.3e-69 267.3 208 60.6
arahy.Tifrunner.gnm1.ann1.2RH035 Arachis hypogaea HOM05D005112 ORTHO05D006681 1.7e-69 266.9 208 59.1
arahy.Tifrunner.gnm1.ann1.LQLC9G Arachis hypogaea HOM05D005112 ORTHO05D006681 1.7e-69 266.9 208 59.1
ECA238G0687 Erigeron canadensis HOM05D005112 ORTHO05D006681 4.9e-69 265.4 207 59.9
CAN.G176.1 Capsicum annuum HOM05D005112 ORTHO05D006681 6.4e-69 265.0 208 61.5
Pp3c7_1630 Physcomitrium patens HOM05D005112 ORTHO05D006681 1.2e-67 260.8 217 54.4
Solyc08g014480.4 Solanum lycopersicum HOM05D005112 ORTHO05D006681 1.2e-67 260.8 208 61.1
Sopen08g005470 Solanum pennellii HOM05D005112 ORTHO05D006681 3.5e-67 259.2 208 61.1
MELO3C012472.2 Cucumis melo HOM05D005112 ORTHO05D006681 1.0e-66 257.7 220 55.9
CBR_g32018 Chara braunii HOM05D005112 ORTHO05D006681 3.8e-61 239.2 215 52.1
AagrBONN_evm.TU.Sc2ySwM_368.212 Anthoceros agrestis HOM05D005112 ORTHO05D006681 5.5e-60 235.3 208 51.0
Aa31LG10G13430 Aethionema arabicum HOM05D005112 ORTHO05D006681 4.6e-59 232.3 208 54.3
SMO266G0060 Selaginella moellendorffii HOM05D005112 ORTHO05D006681 4.6e-59 232.3 209 53.1
Lj9C664G6 Lonicera japonica HOM05D005112 ORTHO05D006681 1.6e-56 223.8 132 74.2
HPP92_012095 Vanilla planifolia HOM05D005112 ORTHO05D006681 3.4e-54 216.1 120 79.2
FAN10G3804 Fragaria x ananassa HOM05D005112 ORTHO05D006681 1.6e-48 197.2 215 48.8
SEGI_06402 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 2.4e-47 193.4 153 58.8
Nitab4.5_0000013g0140 Nicotiana tabacum HOM05D005112 ORTHO05D006681 4.1e-47 192.6 208 49.0
CARHR164340 Cardamine hirsuta HOM05D005112 ORTHO05D006681 2.2e-45 186.8 108 77.8
Lsat_1_v5_gn_3_3641 Lactuca sativa HOM05D005112 ORTHO05D003508 1.4e-31 141.0 119 57.1
Lsat_1_v5_gn_3_132500 Lactuca sativa HOM05D005112 ORTHO05D001778 1.8e-31 140.6 107 58.9
Lsat_1_v5_gn_2_52800 Lactuca sativa HOM05D005112 ORTHO05D006681 3.5e-30 136.3 69 84.1
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 1.3e-29 134.4 80 75.0
Cre08.g379450 Chlamydomonas reinhardtii HOM05D005112 ORTHO05D006681 2.9e-29 133.3 107 56.1
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 3.8e-29 132.9 69 82.6
Oeu042660.1 Olea europaea HOM05D005112 ORTHO05D006681 9.7e-25 118.2 64 82.8
PRCOL_00006392 Prasinoderma coloniale HOM05D005112 ORTHO05D006681 9.1e-23 111.7 144 41.7
Thecc.10G156500 Theobroma cacao HOM05D005112 ORTHO05D006681 5.9e-22 109.0 150 42.0
Lsat_1_v5_gn_9_73420 Lactuca sativa HOM05D001315 ORTHO05D001618 2.9e-21 106.7 64 70.3
Haze_03042 Corylus avellana HOM05D005112 ORTHO05D006681 5.0e-21 105.9 124 44.4
Lsat_1_v5_gn_4_185820 Lactuca sativa HOM05D012196 ORTHO05D016147 6.3e-16 89.0 75 54.7
Lsat_1_v5_gn_8_105280 Lactuca sativa HOM05D000295 ORTHO05D000188 2.4e-15 87.0 89 49.4
Lsat_1_v5_gn_4_23800 Lactuca sativa HOM05D000069 ORTHO05D016147 3.1e-15 86.7 145 38.6
Lsat_1_v5_gn_4_82640 Lactuca sativa HOM05D001821 ORTHO05D001778 7.0e-15 85.5 44 79.5
Lsat_1_v5_gn_8_160861 Lactuca sativa HOM05D000295 ORTHO05D000188 7.0e-15 85.5 44 79.5
Lsat_1_v5_gn_9_100881 Lactuca sativa HOM05D005112 ORTHO05D016147 5.9e-14 82.4 81 51.9
Lsat_1_v5_gn_3_85321 Lactuca sativa HOM05D000295 ORTHO05D006681 3.8e-13 79.7 44 75.0
MCO01G649 Micromonas commoda HOM05D005112 ORTHO05D006681 1.4e-10 71.2 51 58.8
Lsat_1_v5_gn_3_137840 Lactuca sativa HOM05D005112 ORTHO05D036434 2.3e-10 70.5 56 58.9


User provided reference genes

Program Settings