Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0920G001 Amborella trichopoda HOM05D001552 ORTHO05D065591 1.4e-274 949.5 701 100.0
Nn1g04789 Nelumbo nucifera HOM05D001552 ORTHO05D003294 1.6e-31 142.1 422 46.9
Cc10_g14600 Coffea canephora HOM05D001552 ORTHO05D003294 1.5e-29 135.6 418 50.5
SEGI_17464 Sequoiadendron giganteum HOM05D001552 ORTHO05D003294 7.7e-26 123.2 583 40.7
Lalb_Chr06g0161531 Lupinus albus HOM05D001552 ORTHO05D003294 2.5e-24 118.2 393 43.0
Aqoxy5G01312 Aquilegia oxysepala HOM05D001552 ORTHO05D003294 2.7e-23 114.8 335 52.2
MBI14_g25242_MAGBIO Magnolia biondii HOM05D001552 ORTHO05D003294 2.7e-23 114.8 744 40.3
Dinv25851 Davidia involucrata HOM05D001552 ORTHO05D003294 3.6e-23 114.4 618 35.6
Prupe.8G027900 Prunus persica HOM05D001552 ORTHO05D003294 4.7e-23 114.0 773 32.5
Nn5g30352 Nelumbo nucifera HOM05D001552 ORTHO05D003294 7.9e-23 113.2 438 44.7
arahy.Tifrunner.gnm1.ann1.I67LVW Arachis hypogaea HOM05D001552 ORTHO05D003294 1.8e-22 112.1 483 42.4
arahy.Tifrunner.gnm1.ann1.41AL06 Arachis hypogaea HOM05D001552 ORTHO05D003294 2.3e-22 111.7 459 43.4
Duzib147G0536 Durio zibethinus HOM05D001552 ORTHO05D003294 5.1e-22 110.5 364 44.8
Rhsim06G0017900 Rhododendron simsii HOM05D001552 ORTHO05D003294 5.1e-22 110.5 430 45.8
Psat6g193320 Pisum sativum HOM05D001552 ORTHO05D003294 1.1e-21 109.4 637 37.0
TWI32G1172 Tripterygium wilfordii HOM05D001552 ORTHO05D003294 2.0e-21 108.6 760 32.0
PSO541G0812 Papaver somniferum HOM05D001552 ORTHO05D003294 7.4e-21 106.7 403 44.7
Dinv01061 Davidia involucrata HOM05D001552 ORTHO05D003294 9.7e-21 106.3 728 35.7
Nitab4.5_0000971g0010 Nicotiana tabacum HOM05D001552 ORTHO05D003294 1.7e-20 105.5 426 42.0
ECA247G0581 Erigeron canadensis HOM05D001552 ORTHO05D003294 3.7e-20 104.4 653 40.9
PSO675G0197 Papaver somniferum HOM05D001552 ORTHO05D003294 3.7e-20 104.4 403 45.7
Rhsim02G0210400 Rhododendron simsii HOM05D001552 ORTHO05D003294 3.7e-20 104.4 336 50.3
PGR042G3030 Punica granatum HOM05D001552 ORTHO05D003294 1.1e-19 102.8 344 47.7
PGR122G0003 Punica granatum HOM05D001552 ORTHO05D003294 1.1e-19 102.8 344 47.7
Lsat_1_v5_gn_1_6540 Lactuca sativa HOM05D001552 ORTHO05D003294 1.4e-19 102.4 227 55.1
Aqoxy5G00841 Aquilegia oxysepala HOM05D001552 ORTHO05D003294 1.8e-19 102.1 336 47.0
Phvul.007G079200 Phaseolus vulgaris HOM05D001552 ORTHO05D003294 2.4e-19 101.7 381 42.5
Atru.chr3.1471 Acer truncatum HOM05D001552 ORTHO05D003294 3.1e-19 101.3 352 49.4
CSS0040061 Camellia sinensis var. sinensis HOM05D001552 ORTHO05D003294 5.3e-19 100.5 676 36.7
Mapoly0112s0026 Marchantia polymorpha HOM05D001552 ORTHO05D003294 5.3e-19 100.5 422 49.3
Nitab4.5_0006298g0030 Nicotiana tabacum HOM05D001552 ORTHO05D003294 7.0e-19 100.1 427 41.0
CsaV3_7G025160 Cucumis sativus L. HOM05D001552 ORTHO05D003294 9.1e-19 99.8 421 41.1
Os05g0592600 Oryza sativa ssp. japonica HOM05D001552 ORTHO05D003294 9.1e-19 99.8 389 48.1
Gohir.A04G138500 Gossypium hirsutum HOM05D001552 ORTHO05D003294 1.2e-18 99.4 410 42.4
HanXRQChr10g0306561 Helianthus annuus HOM05D001552 ORTHO05D003294 1.6e-18 99.0 217 47.9
Thecc.01G142700 Theobroma cacao HOM05D001552 ORTHO05D003294 1.6e-18 99.0 435 41.4
Sc15g0007440 Simmondsia chinensis HOM05D001552 ORTHO05D003294 2.0e-18 98.6 431 45.2
VMungo0720G2262 Vigna mungo HOM05D001552 ORTHO05D003294 2.0e-18 98.6 353 44.5
Duzib248G1523 Durio zibethinus HOM05D001552 ORTHO05D003294 2.6e-18 98.2 364 47.5
Sed0008952 Sechium edule HOM05D001552 ORTHO05D003294 2.6e-18 98.2 590 38.6
Manes.02G178500 Manihot esculenta HOM05D001552 ORTHO05D003294 3.5e-18 97.8 438 41.6
TAR381G0343 Trochodendron aralioides HOM05D001552 ORTHO05D003294 3.5e-18 97.8 723 40.4
AagrBONN_evm.TU.Sc2ySwM_228.5643 Anthoceros agrestis HOM05D001552 ORTHO05D003294 7.7e-18 96.7 414 43.7
HanXRQChr16g0503421 Helianthus annuus HOM05D001552 ORTHO05D003294 7.7e-18 96.7 379 44.1
Pp3c4_28500 Physcomitrium patens HOM05D001552 ORTHO05D003294 1.3e-17 95.9 222 64.0
CAN.G1025.5 Capsicum annuum HOM05D001552 ORTHO05D003294 1.7e-17 95.5 631 34.7
Sabra12G0027700 Salix brachista HOM05D001552 ORTHO05D003294 2.2e-17 95.1 437 44.6
Lj9C478T4 Lonicera japonica HOM05D001552 ORTHO05D003294 2.9e-17 94.7 425 47.1
Zm00001eb345280 Zea mays HOM05D001552 ORTHO05D003294 3.8e-17 94.4 328 47.3
Sed0012093 Sechium edule HOM05D001552 ORTHO05D003294 5.0e-17 94.0 426 38.7
ClCG09G009640 Citrullus lanatus HOM05D001552 ORTHO05D003294 6.5e-17 93.6 434 39.6
HanXRQChr02g0040771 Helianthus annuus HOM05D001552 ORTHO05D003294 6.5e-17 93.6 441 42.2
Potri.012G039200 Populus trichocarpa HOM05D001552 ORTHO05D003294 8.5e-17 93.2 452 39.8
Hund21083 Selenicereus undatus HOM05D001552 ORTHO05D003294 1.1e-16 92.8 360 48.1
Cfa010518 Carpinus fangiana HOM05D001552 ORTHO05D003294 2.5e-16 91.7 219 55.3
Migut.N02939 Erythranthe guttata HOM05D001552 ORTHO05D003294 2.5e-16 91.7 348 47.4
THA.LOC104813715 Tarenaya hassleriana HOM05D001552 ORTHO05D003294 7.2e-16 90.1 379 41.4
MELO3C023716.2 Cucumis melo HOM05D001552 ORTHO05D003294 9.4e-16 89.7 430 39.3
Oeu036723.4 Olea europaea HOM05D001552 ORTHO05D003294 1.6e-15 89.0 623 33.5
Glyma.20G166200 Glycine max HOM05D001552 ORTHO05D003294 2.1e-15 88.6 481 40.5
Sc15g0007410 Simmondsia chinensis HOM05D001552 ORTHO05D003294 2.1e-15 88.6 431 44.3
CSS0002929 Camellia sinensis var. sinensis HOM05D001552 ORTHO05D003294 2.7e-15 88.2 350 41.4
Cpa.g.sc21.188 Carica papaya HOM05D001552 ORTHO05D003294 2.7e-15 88.2 151 42.4
Ciclev10000034m.g Citrus clementina HOM05D001552 ORTHO05D003294 6.1e-15 87.0 377 44.0
SGA_v2.0_scaffold166G38394 Striga asiatica HOM05D001552 ORTHO05D003294 6.1e-15 87.0 397 43.3
Ah.04g157390 Amaranthus hybridus HOM05D001552 ORTHO05D003294 8.0e-15 86.7 414 40.3
C02p32730 Brassica napus HOM05D001552 ORTHO05D003294 8.0e-15 86.7 353 42.2
SalBow6G3186 Salvia bowleyana HOM05D001552 ORTHO05D003294 1.4e-14 85.9 413 41.9
AT1G76720 Arabidopsis thaliana HOM05D001552 ORTHO05D003294 1.8e-14 85.5 556 32.2
Gohir.D04G181400 Gossypium hirsutum HOM05D001552 ORTHO05D003294 3.0e-14 84.7 412 43.0
MD10G1024100 Malus domestica HOM05D001552 ORTHO05D003294 3.0e-14 84.7 781 32.0
Peaxi162Scf00253g00825 Petunia axillaris HOM05D001552 ORTHO05D003294 5.2e-14 84.0 424 42.0
A02p20910 Brassica napus HOM05D001552 ORTHO05D003294 6.7e-14 83.6 353 41.4
AUR62005931 Chenopodium quinoa HOM05D001552 ORTHO05D003294 8.8e-14 83.2 359 35.1
AUR62005934 Chenopodium quinoa HOM05D001552 ORTHO05D003294 8.8e-14 83.2 359 35.1
BcaC03g15705 Brassica carinata HOM05D001552 ORTHO05D003294 1.5e-13 82.4 354 41.0
BolC2t09426H Brassica oleracea HOM05D001552 ORTHO05D003294 1.5e-13 82.4 354 41.0
MD05G1023200 Malus domestica HOM05D001552 ORTHO05D003294 2.6e-13 81.6 768 33.6
Sp5g31970 Schrenkiella parvula HOM05D001552 ORTHO05D003294 3.3e-13 81.3 401 40.6
BraA02t07123Z Brassica rapa HOM05D001552 ORTHO05D003294 4.4e-13 80.9 353 40.8
Potri.019G103600 Populus trichocarpa HOM05D001552 ORTHO05D003294 9.7e-13 79.7 284 49.3
SGA_v2.0_scaffold11G05845 Striga asiatica HOM05D001552 ORTHO05D003294 9.7e-13 79.7 333 45.6
CSS0046977 Camellia sinensis var. sinensis HOM05D001552 ORTHO05D003294 1.3e-12 79.3 162 46.9
FAN20G2090 Fragaria x ananassa HOM05D001552 ORTHO05D003294 1.3e-12 79.3 363 44.9
Thhalv10018018m.g Eutrema salsugineum HOM05D001552 ORTHO05D003294 1.7e-12 79.0 351 41.9
Glyma.10G225800 Glycine max HOM05D001552 ORTHO05D003294 1.7e-12 79.0 478 39.3
GSVIVG01034895001 Vitis vinifera HOM05D001552 ORTHO05D003294 1.7e-12 79.0 239 48.5
Aa31LG4G6880 Aethionema arabicum HOM05D001552 ORTHO05D003294 2.2e-12 78.6 360 45.3
FAN27G2666 Fragaria x ananassa HOM05D001552 ORTHO05D003294 2.2e-12 78.6 363 44.6
Carub.0002s2372 Capsella rubella HOM05D001552 ORTHO05D003294 2.8e-12 78.2 377 40.3
Gorai.012G174700 Gossypium raimondii HOM05D001552 ORTHO05D003294 2.8e-12 78.2 410 42.4
CARHR070350 Cardamine hirsuta HOM05D001552 ORTHO05D003294 3.7e-12 77.8 339 44.0
DCAR_014429 Daucus carota HOM05D001552 ORTHO05D003294 3.7e-12 77.8 428 40.0
Migut.B00286 Erythranthe guttata HOM05D001552 ORTHO05D003294 3.7e-12 77.8 443 37.7
Hund00531 Selenicereus undatus HOM05D001552 ORTHO05D003294 3.7e-12 77.8 346 46.8
Nitab4.5_0000113g0130 Nicotiana tabacum HOM05D001552 ORTHO05D003294 6.3e-12 77.0 393 42.0
Thecc.01G143000 Theobroma cacao HOM05D001552 ORTHO05D003294 8.2e-12 76.6 421 44.7
FvH4_2g13940 Fragaria vesca HOM05D001552 ORTHO05D003294 1.1e-11 76.3 366 44.8
FAN15G1427 Fragaria x ananassa HOM05D001552 ORTHO05D003294 1.1e-11 76.3 348 44.5
Medtr1g099000 Medicago truncatula HOM05D001552 ORTHO05D003294 1.8e-11 75.5 392 39.8
Atru.chr13.2171 Acer truncatum HOM05D001552 ORTHO05D003294 4.1e-11 74.3 785 34.6
FAN24G0455 Fragaria x ananassa HOM05D001552 ORTHO05D003294 5.3e-11 73.9 367 43.9
Ca_19934_v3 Cicer arietinum L. HOM05D001552 ORTHO05D003294 4.5e-10 70.9 170 36.5
Nitab4.5_0011697g0010 Nicotiana tabacum HOM05D001552 ORTHO05D003294 4.5e-10 70.9 432 37.3
Sopen06g019480 Solanum pennellii HOM05D001552 ORTHO05D003294 4.5e-10 70.9 424 37.7
Cc01_g07340 Coffea canephora HOM05D001552 ORTHO05D003294 5.9e-10 70.5 211 57.8
Haze_03453 Corylus avellana HOM05D001552 ORTHO05D003294 5.9e-10 70.5 122 68.0
Haze_03458 Corylus avellana HOM05D001552 ORTHO05D003294 5.9e-10 70.5 122 68.0
Carub.0002s2359 Capsella rubella HOM05D001552 ORTHO05D003294 1.3e-09 69.3 422 36.7
AL2G36950 Arabidopsis lyrata HOM05D001552 ORTHO05D003294 1.7e-09 68.9 451 33.9
CDE02G3560 Ceratophyllum demersum HOM05D001552 ORTHO05D003294 1.7e-09 68.9 745 33.2
AL2G36870 Arabidopsis lyrata HOM05D001552 ORTHO05D003294 2.2e-09 68.6 435 34.0
BcaB05g25013 Brassica carinata HOM05D001552 ORTHO05D003294 2.2e-09 68.6 391 41.7
RcHm_v2.0_Chr6g0275701 Rosa chinensis HOM05D001552 ORTHO05D003294 3.8e-09 67.8 460 39.6
Hund21082 Selenicereus undatus HOM05D001552 ORTHO05D003294 3.8e-09 67.8 354 47.2
EL10Ac7g16024 Beta vulgaris HOM05D001552 ORTHO05D003294 6.5e-09 67.0 424 42.7
COL.COLO4_12119 Corchorus olitorius HOM05D001552 ORTHO05D003294 1.9e-08 65.5 165 63.6
Lj5g0023968 Lotus japonicus HOM05D001552 ORTHO05D003294 1.9e-08 65.5 420 44.3
Peaxi162Scf01517g00142 Petunia axillaris HOM05D001552 ORTHO05D003294 2.5e-08 65.1 149 38.3
PGSC0003DMG400030793 Solanum tuberosum HOM05D001552 ORTHO05D003294 3.2e-08 64.7 629 30.2
Solyc06g054400.3 Solanum lycopersicum HOM05D001552 ORTHO05D003294 4.2e-08 64.3 414 37.4
Sed0008881 Sechium edule HOM05D001552 ORTHO05D003294 5.5e-08 63.9 418 37.3
Prupe.2G099300 Prunus persica HOM05D001552 ORTHO05D003294 9.4e-08 63.2 154 32.5
Eucgr.F02713 Eucalyptus grandis HOM05D001552 ORTHO05D003294 1.2e-07 62.8 449 38.1
DCAR_013502 Daucus carota HOM05D001552 ORTHO05D003294 8.0e-07 60.1 286 45.8
CiPaw.15G017000 Carya illinoinensis HOM05D001552 ORTHO05D003294 1.0e-06 59.7 721 37.4
CAN.G371.79 Capsicum annuum HOM05D001552 ORTHO05D003294 1.4e-06 59.3 219 44.3
CiPaw.16G013700 Carya illinoinensis HOM05D001552 ORTHO05D003294 1.4e-06 59.3 328 44.5
AT1G76810 Arabidopsis thaliana HOM05D001552 ORTHO05D003294 3.0e-06 58.2 403 34.2
PSO541G1760 Papaver somniferum HOM05D001552 ORTHO05D003294 4.0e-06 57.8 335 41.8
Sopen03g011870 Solanum pennellii HOM05D001552 ORTHO05D003294 4.0e-06 57.8 163 46.0
PGSC0003DMG400005489 Solanum tuberosum HOM05D001552 ORTHO05D003294 6.8e-06 57.0 155 41.3


User provided reference genes

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