Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0829G080 Amborella trichopoda HOM05D005820 ORTHO05D007116 0.0e+00 1369.0 690 100.0
Nn3g21157 Nelumbo nucifera HOM05D005820 ORTHO05D007116 9.4e-210 734.2 715 54.7
TAR633G0012 Trochodendron aralioides HOM05D005820 ORTHO05D007116 8.8e-208 727.6 716 54.6
TAR365G1018 Trochodendron aralioides HOM05D005820 ORTHO05D007116 2.2e-198 696.4 709 53.3
TAR365G1123 Trochodendron aralioides HOM05D005820 ORTHO05D007116 6.3e-198 694.9 709 52.9
PSO339G0775 Papaver somniferum HOM05D005820 ORTHO05D007116 2.0e-188 663.3 754 49.5
Cfa016076 Carpinus fangiana HOM05D005820 ORTHO05D007116 3.8e-187 659.1 710 50.7
Aqoxy2G01900 Aquilegia oxysepala HOM05D005820 ORTHO05D007116 8.5e-187 657.9 729 48.4
PSO384G2364 Papaver somniferum HOM05D005820 ORTHO05D007116 2.5e-186 656.4 786 47.8
PSO210G4891 Papaver somniferum HOM05D005820 ORTHO05D007116 3.2e-186 656.0 752 49.7
Atru.chr13.1435 Acer truncatum HOM05D005820 ORTHO05D007116 1.8e-184 650.2 719 50.2
CiPaw.05G212600 Carya illinoinensis HOM05D005820 ORTHO05D007116 5.2e-184 648.7 711 50.2
Atru.chr12.1871 Acer truncatum HOM05D005820 ORTHO05D007116 2.8e-182 642.9 719 49.0
CSS0036845 Camellia sinensis var. sinensis HOM05D005820 ORTHO05D007116 1.4e-181 640.6 708 49.4
QL09p020654 Quercus lobata HOM05D005820 ORTHO05D007116 2.0e-180 636.7 711 50.1
Thecc.05G222900 Theobroma cacao HOM05D005820 ORTHO05D007116 1.5e-178 630.6 716 49.7
Potri.013G077200 Populus trichocarpa HOM05D005820 ORTHO05D007116 2.7e-177 626.3 719 47.6
TWI53G1480 Tripterygium wilfordii HOM05D005820 ORTHO05D007116 5.7e-175 618.6 706 48.2
Gorai.003G057900 Gossypium raimondii HOM05D005820 ORTHO05D007116 8.6e-171 604.7 712 49.0
Gohir.D03G055100 Gossypium hirsutum HOM05D005820 ORTHO05D007116 3.3e-170 602.8 712 48.9
DCAR_020431 Daucus carota HOM05D005820 ORTHO05D007116 1.2e-169 600.9 694 48.3
COL.COLO4_15131 Corchorus olitorius HOM05D005820 ORTHO05D007116 3.0e-168 596.3 694 48.6
Gohir.A02G125300 Gossypium hirsutum HOM05D005820 ORTHO05D007116 5.2e-168 595.5 638 51.6
Duzib106G1003 Durio zibethinus HOM05D005820 ORTHO05D007116 5.4e-165 585.5 699 46.9
Actinidia08766 Actinidia chinensis HOM05D005820 ORTHO05D007116 7.0e-165 585.1 681 47.1
vmacro06371 Vaccinium macrocarpon HOM05D005820 ORTHO05D007116 5.9e-164 582.0 776 44.1
CsaV3_5G005010 Cucumis sativus L. HOM05D005820 ORTHO05D007116 7.8e-164 581.6 719 45.1
THA.LOC104821161 Tarenaya hassleriana HOM05D005820 ORTHO05D007116 1.9e-162 577.0 698 45.4
FAN03G2216 Fragaria x ananassa HOM05D005820 ORTHO05D007116 4.3e-162 575.9 704 47.7
MELO3C005455.2 Cucumis melo HOM05D005820 ORTHO05D007116 5.6e-162 575.5 719 45.1
HanXRQChr15g0492741 Helianthus annuus HOM05D005820 ORTHO05D007116 5.6e-162 575.5 697 46.2
Glyma.12G014600 Glycine max HOM05D005820 ORTHO05D007116 9.5e-162 574.7 716 44.4
Phvul.011G017500 Phaseolus vulgaris HOM05D005820 ORTHO05D007116 1.2e-161 574.3 720 45.1
AT5G16690 Arabidopsis thaliana HOM05D005820 ORTHO05D007116 2.8e-161 573.2 712 44.4
MD07G1032700 Malus domestica HOM05D005820 ORTHO05D007116 4.7e-161 572.4 689 48.8
RcHm_v2.0_Chr1g0384611 Rosa chinensis HOM05D005820 ORTHO05D007116 4.7e-161 572.4 705 47.9
Solyc12g013880.2 Solanum lycopersicum HOM05D005820 ORTHO05D007116 4.7e-161 572.4 696 47.0
FAN01G2368 Fragaria x ananassa HOM05D005820 ORTHO05D007116 8.0e-161 571.6 694 48.1
Sp6g27470 Schrenkiella parvula HOM05D005820 ORTHO05D007116 1.4e-160 570.9 720 44.4
Sopen12g007200 Solanum pennellii HOM05D005820 ORTHO05D007116 1.4e-160 570.9 696 46.8
VMungo1127G1342 Vigna mungo HOM05D005820 ORTHO05D007116 4.0e-160 569.3 729 44.4
ECA232G1869 Erigeron canadensis HOM05D005820 ORTHO05D007116 5.2e-160 568.9 707 45.7
FvH4_7g34260 Fragaria vesca HOM05D005820 ORTHO05D007116 1.2e-159 567.8 695 47.8
C09p60450 Brassica napus HOM05D005820 ORTHO05D007116 1.5e-159 567.4 709 44.3
Os10g0402200 Oryza sativa ssp. japonica HOM05D005820 ORTHO05D007116 1.5e-159 567.4 622 47.3
CANSAT54G2180 Cannabis sativa HOM05D005820 ORTHO05D007116 4.4e-159 565.8 678 47.3
Thhalv10012783m.g Eutrema salsugineum HOM05D005820 ORTHO05D007116 4.4e-159 565.8 721 44.5
ECA233G1554 Erigeron canadensis HOM05D005820 ORTHO05D007116 2.9e-158 563.1 688 45.9
AL6G27690 Arabidopsis lyrata HOM05D005820 ORTHO05D007116 3.7e-158 562.8 711 44.0
Sed0005542 Sechium edule HOM05D005820 ORTHO05D007116 1.9e-157 560.5 719 43.8
A10p22530 Brassica napus HOM05D005820 ORTHO05D007116 2.4e-157 560.1 710 44.4
CARHR196510 Cardamine hirsuta HOM05D005820 ORTHO05D007116 3.2e-157 559.7 712 43.7
Medtr5g082610 Medicago truncatula HOM05D005820 ORTHO05D007116 4.1e-157 559.3 713 43.5
Zm00001eb031810 Zea mays HOM05D005820 ORTHO05D007116 9.2e-157 558.1 640 46.6
BraA10t44315Z Brassica rapa HOM05D005820 ORTHO05D007116 1.2e-156 557.8 721 44.0
Carub.0006s1489 Capsella rubella HOM05D005820 ORTHO05D007116 2.7e-156 556.6 723 42.7
Peaxi162Scf00046g02624 Petunia axillaris HOM05D005820 ORTHO05D007116 3.5e-156 556.2 700 45.6
EL10Ac2g03131 Beta vulgaris HOM05D005820 ORTHO05D007116 7.8e-156 555.1 717 43.8
EL10Ac4g08387 Beta vulgaris HOM05D005820 ORTHO05D007116 1.7e-155 553.9 717 43.9
Lj3g0016493 Lotus japonicus HOM05D005820 ORTHO05D007116 1.7e-155 553.9 660 45.6
AUR62033087 Chenopodium quinoa HOM05D005820 ORTHO05D007116 9.5e-154 548.1 676 45.4
Haze_00369 Corylus avellana HOM05D005820 ORTHO05D007116 2.1e-153 547.0 768 43.8
BolC9t58877H Brassica oleracea HOM05D005820 ORTHO05D007116 2.8e-153 546.6 748 42.8
FAN10G1332 Fragaria x ananassa HOM05D005820 ORTHO05D007116 5.2e-152 542.3 684 46.9
PGR042G2204 Punica granatum HOM05D005820 ORTHO05D007116 6.8e-152 542.0 691 44.7
Lsat_1_v5_gn_9_46201 Lactuca sativa HOM05D005820 ORTHO05D007116 8.9e-152 541.6 714 43.6
Aa31LG11G12940 Aethionema arabicum HOM05D005820 ORTHO05D007116 1.3e-150 537.7 768 41.0
CDE02G0417 Ceratophyllum demersum HOM05D005820 ORTHO05D007116 1.3e-150 537.7 691 43.7
Cc10_g10830 Coffea canephora HOM05D005820 ORTHO05D007116 2.4e-149 533.5 699 44.6
Eucgr.A02992 Eucalyptus grandis HOM05D005820 ORTHO05D007116 3.2e-149 533.1 707 42.6
TPR.G19809 Trifolium pratense HOM05D005820 ORTHO05D007116 3.5e-148 529.6 617 44.7
MSTRG.19155 Avicennia marina HOM05D005820 ORTHO05D007116 6.0e-148 528.9 708 43.1
HPP92_000954 Vanilla planifolia HOM05D005820 ORTHO05D007116 1.7e-147 527.3 701 43.2
Prupe.2G329300 Prunus persica HOM05D005820 ORTHO05D007116 4.7e-145 519.2 688 45.5
BcaB08g36827 Brassica carinata HOM05D005820 ORTHO05D007116 8.9e-144 515.0 734 41.6
Rhsim03G0224500 Rhododendron simsii HOM05D005820 ORTHO05D007116 1.3e-142 511.1 709 42.3
Migut.J00550 Erythranthe guttata HOM05D005820 ORTHO05D007116 2.9e-142 510.0 669 43.6
SGA_v2.0_scaffold75G24867 Striga asiatica HOM05D005820 ORTHO05D007116 3.7e-142 509.6 700 43.0
Manes.08G160700 Manihot esculenta HOM05D005820 ORTHO05D007116 3.2e-141 506.5 609 47.6
Nitab4.5_0012358g0010 Nicotiana tabacum HOM05D005820 ORTHO05D007116 1.1e-138 498.0 644 44.6
Sc13g0011020 Simmondsia chinensis HOM05D005820 ORTHO05D007116 1.9e-122 444.1 521 46.3
Lalb_Chr01g0000781 Lupinus albus HOM05D005820 ORTHO05D007116 1.3e-121 441.4 580 43.3
PSO170G6050 Papaver somniferum HOM05D005820 ORTHO05D007116 1.8e-120 437.6 447 53.0
CAN.G103.20 Capsicum annuum HOM05D005820 ORTHO05D007116 7.1e-117 425.6 580 44.0
Nitab4.5_0010710g0030 Nicotiana tabacum HOM05D005820 ORTHO05D007116 1.3e-113 414.8 578 42.9
Psat5g135040 Pisum sativum HOM05D005820 ORTHO05D007116 4.8e-113 412.9 519 44.1
ClCG01G004810 Citrullus lanatus HOM05D005820 ORTHO05D007116 1.1e-112 411.8 450 48.7
Hma1.2p1_0419F.1_g149510 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 3.0e-107 393.7 438 48.6
unitig_749.g14271 Utricularia gibba HOM05D005820 ORTHO05D007116 7.4e-98 362.5 659 34.6
Ca_03104_v3 Cicer arietinum L. HOM05D005820 ORTHO05D007116 6.9e-96 355.9 423 45.4
Mapoly0140s0032 Marchantia polymorpha HOM05D005820 ORTHO05D007116 1.2e-95 355.1 727 32.5
AagrBONN_evm.TU.Sc2ySwM_368.2608 Anthoceros agrestis HOM05D005820 ORTHO05D007116 1.7e-94 351.3 655 33.0
Sabra13G0066100 Salix brachista HOM05D005820 ORTHO05D007116 3.8e-94 350.1 371 48.5
SalBow3G3950 Salvia bowleyana HOM05D005820 ORTHO05D007116 3.6e-92 343.6 535 39.4
Ciclev10033588m.g Citrus clementina HOM05D005820 ORTHO05D007116 1.0e-91 342.0 347 51.3
AUR62042764 Chenopodium quinoa HOM05D005820 ORTHO05D007116 1.8e-91 341.3 558 38.5
PGSC0003DMG402015362 Solanum tuberosum HOM05D005820 ORTHO05D007116 5.5e-85 319.7 344 51.2
SHI15005 Sapria himalayana HOM05D005820 ORTHO05D007116 7.2e-85 319.3 296 54.1
arahy.Tifrunner.gnm1.ann1.9S7XN2 Arachis hypogaea HOM05D005820 ORTHO05D007116 2.3e-83 314.3 349 49.0
COL.COLO4_22345 Corchorus olitorius HOM05D005820 ORTHO05D007116 1.5e-82 311.6 321 49.8
Pp3c16_7630 Physcomitrium patens HOM05D005820 ORTHO05D007116 5.3e-80 303.1 881 28.7
Hma1.2p1_0419F.1_g149500 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 7.0e-80 302.8 287 54.7
SMO203G0218 Selaginella moellendorffii HOM05D005820 ORTHO05D007116 1.1e-77 295.4 657 29.1
MD01G1239300 Malus domestica HOM05D005820 ORTHO05D007116 7.2e-69 266.2 449 38.3
PGSC0003DMG401015362 Solanum tuberosum HOM05D005820 ORTHO05D007116 8.0e-60 236.1 308 43.5
arahy.Tifrunner.gnm1.ann1.86ZX86 Arachis hypogaea HOM05D005820 ORTHO05D007116 4.4e-58 230.3 339 41.3
Lj3A884T58 Lonicera japonica HOM05D005820 ORTHO05D007116 1.4e-56 225.3 244 48.4
Cpa.g.sc43.140 Carica papaya HOM05D005820 ORTHO05D007116 9.2e-56 222.6 256 48.4
Oeu001352.2 Olea europaea HOM05D005820 ORTHO05D007116 1.8e-51 208.4 272 43.4
Lj3A884T57 Lonicera japonica HOM05D005820 ORTHO05D007116 1.7e-49 201.8 278 43.2
CBR_g52284 Chara braunii HOM05D005820 ORTHO05D007116 4.9e-49 200.3 827 23.3
Cpa.g.sc43.143 Carica papaya HOM05D005820 ORTHO05D007116 1.6e-47 195.3 253 43.9
Ciclev10032799m.g Citrus clementina HOM05D005820 ORTHO05D007116 4.7e-44 183.7 162 59.3
SEGI_39455 Sequoiadendron giganteum HOM05D005820 ORTHO05D007116 7.3e-37 159.8 163 49.7
Oeu046340.1 Olea europaea HOM05D005820 ORTHO05D007116 1.7e-33 148.7 128 57.8
Lalb_Chr01g0000771 Lupinus albus HOM05D005820 ORTHO05D007116 2.3e-30 138.3 107 60.7
CAN.G824.56 Capsicum annuum HOM05D005820 ORTHO05D007116 4.7e-28 130.6 128 53.9
arahy.Tifrunner.gnm1.ann1.9KL91U Arachis hypogaea HOM05D005820 ORTHO05D007116 3.2e-24 117.9 323 32.2
arahy.Tifrunner.gnm1.ann1.CH4JFK Arachis hypogaea HOM05D005820 ORTHO05D007116 5.4e-24 117.1 691 23.4
CAN.G557.3 Capsicum annuum HOM05D005820 ORTHO05D007116 9.2e-24 116.3 147 43.5
Hma1.2p1_0419F.1_g149520 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 5.1e-22 110.5 113 54.9
Nitab4.5_0010710g0040 Nicotiana tabacum HOM05D005820 ORTHO05D007116 6.6e-22 110.2 133 45.9
AUR62022348 Chenopodium quinoa HOM05D005820 ORTHO05D007116 7.6e-18 96.7 98 50.0
Ah.10g032150 Amaranthus hybridus HOM05D005820 ORTHO05D007116 4.2e-16 90.9 291 29.6
Cfa022750 Carpinus fangiana HOM05D005820 ORTHO05D007116 3.0e-14 84.7 484 22.3
CAN.G159.6 Capsicum annuum HOM05D001691 ORTHO05D007116 2.9e-09 68.2 169 27.8
CAN.G1793.2 Capsicum annuum HOM05D005820 ORTHO05D007116 1.4e-08 65.9 195 27.2
arahy.Tifrunner.gnm1.ann1.DVH85A Arachis hypogaea HOM05D005820 ORTHO05D007116 2.7e-07 61.6 60 53.3
MCO08G313 Micromonas commoda HOM05D005820 ORTHO05D007116 2.3e-06 58.5 130 27.7


User provided reference genes

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