Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0827G043 Amborella trichopoda HOM05D004929 ORTHO05D006492 2.8e-216 755.0 378 100.0
Nn8g40033 Nelumbo nucifera HOM05D004929 ORTHO05D006492 3.0e-157 558.9 370 75.4
TAR633G2310 Trochodendron aralioides HOM05D004929 ORTHO05D006492 4.1e-151 538.5 369 73.4
Aqoxy4G03095 Aquilegia oxysepala HOM05D004929 ORTHO05D006492 4.3e-148 528.5 372 70.7
Hund23289 Selenicereus undatus HOM05D004929 ORTHO05D006492 7.3e-148 527.7 373 70.2
PSO384G0906 Papaver somniferum HOM05D004929 ORTHO05D006492 1.2e-147 526.9 368 71.2
PSO699G0033 Papaver somniferum HOM05D004929 ORTHO05D006492 1.2e-147 526.9 368 71.2
Ciclev10015593m.g Citrus clementina HOM05D004929 ORTHO05D006492 2.1e-147 526.2 368 70.4
Thecc.04G019500 Theobroma cacao HOM05D004929 ORTHO05D006492 3.6e-147 525.4 376 69.9
Aqoxy5G00914 Aquilegia oxysepala HOM05D004929 ORTHO05D006492 4.7e-147 525.0 372 70.4
GSVIVG01032385001 Vitis vinifera HOM05D004929 ORTHO05D006492 6.2e-147 524.6 377 69.8
Gorai.006G034800 Gossypium raimondii HOM05D004929 ORTHO05D006492 2.3e-146 522.7 372 69.4
Gohir.A09G030100 Gossypium hirsutum HOM05D004929 ORTHO05D006492 3.1e-146 522.3 372 68.8
Gohir.D09G029800 Gossypium hirsutum HOM05D004929 ORTHO05D006492 8.9e-146 520.8 372 68.8
Potri.001G343400 Populus trichocarpa HOM05D004929 ORTHO05D006492 1.5e-145 520.0 369 68.8
PGR142G3088 Punica granatum HOM05D004929 ORTHO05D006492 2.0e-145 519.6 371 69.5
Dinv25726 Davidia involucrata HOM05D004929 ORTHO05D006492 3.4e-145 518.8 372 69.6
Rhsim10G0014700 Rhododendron simsii HOM05D004929 ORTHO05D006492 3.4e-145 518.8 369 70.2
Cc09_g04510 Coffea canephora HOM05D004929 ORTHO05D006492 5.8e-145 518.1 372 69.6
Migut.K01411 Erythranthe guttata HOM05D004929 ORTHO05D006492 5.8e-145 518.1 362 70.4
Duzib147G0164 Durio zibethinus HOM05D004929 ORTHO05D006492 7.5e-145 517.7 373 69.7
MBI05_g22077_MAGBIO Magnolia biondii HOM05D004929 ORTHO05D006492 7.5e-145 517.7 368 71.7
CiPaw.04G029600 Carya illinoinensis HOM05D004929 ORTHO05D006492 9.8e-145 517.3 367 70.3
vmacro05876 Vaccinium macrocarpon HOM05D004929 ORTHO05D006492 9.8e-145 517.3 377 67.9
Actinidia05982 Actinidia chinensis HOM05D004929 ORTHO05D006492 1.7e-144 516.5 370 68.6
Manes.15G151900 Manihot esculenta HOM05D004929 ORTHO05D006492 3.7e-144 515.4 369 69.9
Peaxi162Scf00129g01650 Petunia axillaris HOM05D004929 ORTHO05D006492 4.9e-144 515.0 374 68.4
Thhalv10020980m.g Eutrema salsugineum HOM05D004929 ORTHO05D006492 6.4e-144 514.6 368 67.4
CiPaw.03G045500 Carya illinoinensis HOM05D004929 ORTHO05D006492 8.3e-144 514.2 369 69.6
Sabra16G0222700 Salix brachista HOM05D004929 ORTHO05D006492 8.3e-144 514.2 366 68.6
Nitab4.5_0001860g0030 Nicotiana tabacum HOM05D004929 ORTHO05D006492 1.1e-143 513.8 375 68.3
Peaxi162Scf03028g00012 Petunia axillaris HOM05D004929 ORTHO05D006492 1.1e-143 513.8 374 68.4
MELO3C021592.2 Cucumis melo HOM05D004929 ORTHO05D006492 1.9e-143 513.1 375 67.7
Aa31LG5G10780 Aethionema arabicum HOM05D004929 ORTHO05D006492 2.4e-143 512.7 376 67.6
QL02p074005 Quercus lobata HOM05D004929 ORTHO05D006492 2.4e-143 512.7 366 69.7
AL3G10510 Arabidopsis lyrata HOM05D004929 ORTHO05D006492 3.2e-143 512.3 364 67.9
C03p39500 Brassica napus HOM05D004929 ORTHO05D006492 3.2e-143 512.3 368 66.6
Prupe.3G293800 Prunus persica HOM05D004929 ORTHO05D006492 3.2e-143 512.3 362 70.7
MSTRG.3138 Avicennia marina HOM05D004929 ORTHO05D006492 4.1e-143 511.9 365 69.9
THA.LOC104821096 Tarenaya hassleriana HOM05D004929 ORTHO05D006492 4.1e-143 511.9 362 69.3
CAN.G473.20 Capsicum annuum HOM05D004929 ORTHO05D006492 5.4e-143 511.5 372 68.5
Solyc02g093440.4 Solanum lycopersicum HOM05D004929 ORTHO05D006492 5.4e-143 511.5 372 68.8
PGSC0003DMG400012608 Solanum tuberosum HOM05D004929 ORTHO05D006492 5.4e-143 511.5 375 68.3
ClCG09G019380 Citrullus lanatus HOM05D004929 ORTHO05D006492 1.2e-142 510.4 375 67.7
Haze_14758 Corylus avellana HOM05D004929 ORTHO05D006492 1.2e-142 510.4 369 68.8
SalBow7G3047 Salvia bowleyana HOM05D004929 ORTHO05D006492 1.2e-142 510.4 370 68.9
BcaC01g04530 Brassica carinata HOM05D004929 ORTHO05D006492 2.1e-142 509.6 368 66.3
FvH4_6g51800 Fragaria vesca HOM05D004929 ORTHO05D006492 2.7e-142 509.2 367 69.2
Sopen02g038230 Solanum pennellii HOM05D004929 ORTHO05D006492 3.5e-142 508.8 372 68.5
BolC3t16218H Brassica oleracea HOM05D004929 ORTHO05D006492 6.0e-142 508.1 368 65.8
Cfa007339 Carpinus fangiana HOM05D004929 ORTHO05D006492 7.8e-142 507.7 369 68.0
FAN09G2944 Fragaria x ananassa HOM05D004929 ORTHO05D006492 1.0e-141 507.3 367 68.9
MD09G1023000 Malus domestica HOM05D004929 ORTHO05D006492 1.0e-141 507.3 361 69.8
Sp3g00410 Schrenkiella parvula HOM05D004929 ORTHO05D006492 1.0e-141 507.3 368 66.8
FAN14G2766 Fragaria x ananassa HOM05D004929 ORTHO05D006492 1.3e-141 506.9 367 68.9
Peaxi162Scf00080g01316 Petunia axillaris HOM05D004929 ORTHO05D005557 1.3e-141 506.9 371 67.7
Sed0020215 Sechium edule HOM05D004929 ORTHO05D006492 1.7e-141 506.5 375 67.2
TWI12G0632 Tripterygium wilfordii HOM05D004929 ORTHO05D006492 1.7e-141 506.5 366 67.5
CsaV3_5G027030 Cucumis sativus L. HOM05D004929 ORTHO05D006492 2.3e-141 506.1 371 67.4
AT3G01640 Arabidopsis thaliana HOM05D004929 ORTHO05D006492 3.0e-141 505.8 368 66.6
HPP92_015407 Vanilla planifolia HOM05D004929 ORTHO05D006492 3.0e-141 505.8 368 68.2
BraA03t12414Z Brassica rapa HOM05D004929 ORTHO05D006492 1.1e-140 503.8 364 66.5
CANSAT64G1903 Cannabis sativa HOM05D004929 ORTHO05D006492 1.1e-140 503.8 368 67.7
Lju41A43T26 Lonicera japonica HOM05D004929 ORTHO05D006492 3.3e-140 502.3 365 67.9
Carub.0003s0042 Capsella rubella HOM05D004929 ORTHO05D006492 4.3e-140 501.9 364 67.0
Cpa.g.sc108.76 Carica papaya HOM05D003450 ORTHO05D004150 4.3e-140 501.9 370 65.7
RcHm_v2.0_Chr2g0173281 Rosa chinensis HOM05D004929 ORTHO05D006492 4.3e-140 501.9 369 69.1
EL10Ac6g14097 Beta vulgaris HOM05D004929 ORTHO05D006492 5.6e-140 501.5 362 68.0
Ah.03g137000 Amaranthus hybridus HOM05D004929 ORTHO05D006492 7.3e-140 501.1 372 65.6
A03p32440 Brassica napus HOM05D004929 ORTHO05D006492 3.6e-139 498.8 364 65.9
DCAR_021732 Daucus carota HOM05D004929 ORTHO05D006492 3.6e-139 498.8 349 70.8
CARHR075280 Cardamine hirsuta HOM05D004929 ORTHO05D006492 6.2e-139 498.0 364 66.8
FAN05G4087 Fragaria x ananassa HOM05D004929 ORTHO05D006492 6.2e-139 498.0 367 68.1
TWI56G0780 Tripterygium wilfordii HOM05D004929 ORTHO05D006492 5.2e-138 495.0 366 66.1
Lsat_1_v5_gn_0_18301 Lactuca sativa HOM05D004929 ORTHO05D006492 6.8e-138 494.6 374 66.6
MD17G1022300 Malus domestica HOM05D004929 ORTHO05D006492 6.8e-138 494.6 367 68.1
Sed0027438 Sechium edule HOM05D004929 ORTHO05D006492 8.9e-138 494.2 374 65.8
AT5G14470 Arabidopsis thaliana HOM05D004929 ORTHO05D006492 1.5e-137 493.4 376 64.9
FAN02G0047 Fragaria x ananassa HOM05D004929 ORTHO05D006492 2.0e-137 493.0 379 66.0
AL6G25200 Arabidopsis lyrata HOM05D004929 ORTHO05D006492 2.6e-137 492.7 366 66.4
Zm00001eb025800 Zea mays HOM05D004929 ORTHO05D006492 3.4e-137 492.3 364 67.3
Carub.0006s1265 Capsella rubella HOM05D004929 ORTHO05D006492 4.4e-137 491.9 374 65.5
BraA10t44472Z Brassica rapa HOM05D004929 ORTHO05D006492 1.7e-136 490.0 367 65.7
AUR62008872 Chenopodium quinoa HOM05D004929 ORTHO05D006492 2.2e-136 489.6 367 66.5
Thhalv10013912m.g Eutrema salsugineum HOM05D004929 ORTHO05D006492 3.8e-136 488.8 367 63.8
HanXRQChr17g0548651 Helianthus annuus HOM05D004929 ORTHO05D006492 1.1e-135 487.3 358 68.7
Os11g0217300 Oryza sativa ssp. japonica HOM05D004929 ORTHO05D006492 1.4e-135 486.9 360 67.8
CARHR198840 Cardamine hirsuta HOM05D004929 ORTHO05D006492 2.4e-135 486.1 375 64.5
Phvul.004G004700 Phaseolus vulgaris HOM05D004929 ORTHO05D006492 2.7e-134 482.6 366 65.8
Lj2g0024676 Lotus japonicus HOM05D004929 ORTHO05D006492 6.0e-134 481.5 348 69.5
arahy.Tifrunner.gnm1.ann1.NF5K9F Arachis hypogaea HOM05D004929 ORTHO05D006492 1.0e-133 480.7 372 65.1
arahy.Tifrunner.gnm1.ann1.FEY4ZS Arachis hypogaea HOM05D004929 ORTHO05D006492 1.3e-133 480.3 372 65.1
HanXRQChr17g0548641 Helianthus annuus HOM05D004929 ORTHO05D006492 1.3e-133 480.3 362 67.1
Medtr6g004430 Medicago truncatula HOM05D004929 ORTHO05D006492 1.3e-133 480.3 367 66.5
AUR62031837 Chenopodium quinoa HOM05D004929 ORTHO05D006492 1.7e-133 479.9 407 60.7
Glyma.05G002500 Glycine max HOM05D004929 ORTHO05D006492 3.9e-133 478.8 366 64.5
BcaB08g36997 Brassica carinata HOM05D004929 ORTHO05D006492 6.6e-133 478.0 365 64.7
TPR.G31950 Trifolium pratense HOM05D004929 ORTHO05D006492 6.6e-133 478.0 369 65.9
VMungo0464G1388 Vigna mungo HOM05D004929 ORTHO05D006492 8.6e-133 477.6 366 66.1
ECA246G1179 Erigeron canadensis HOM05D004929 ORTHO05D006492 1.5e-132 476.9 372 65.9
Duzib264G0638 Durio zibethinus HOM05D004929 ORTHO05D006492 5.6e-132 474.9 407 61.9
Lalb_Chr06g0176621 Lupinus albus HOM05D004929 ORTHO05D006492 7.3e-132 474.6 372 62.4
Ca_04143_v3 Cicer arietinum L. HOM05D004929 ORTHO05D006492 1.2e-131 473.8 350 67.7
ATR0681G379 Amborella trichopoda HOM05D004929 ORTHO05D006492 1.8e-130 469.9 281 87.2
arahy.Tifrunner.gnm1.ann1.BJ3QP1 Arachis hypogaea HOM05D004929 ORTHO05D006492 3.4e-129 465.7 347 67.1
Oeu018151.1 Olea europaea HOM05D004929 ORTHO05D006492 1.2e-126 457.2 375 63.5
BcaC04g19032 Brassica carinata HOM05D004929 ORTHO05D006492 3.9e-125 452.2 367 62.9
Dinv33427 Davidia involucrata HOM05D004929 ORTHO05D006492 2.5e-124 449.5 273 78.8
SMO145G0043 Selaginella moellendorffii HOM05D004929 ORTHO05D006492 3.6e-123 445.7 359 61.3
BcaB08g36995 Brassica carinata HOM05D004929 ORTHO05D006492 4.8e-123 445.3 373 61.9
SHI00354 Sapria himalayana HOM05D004929 ORTHO05D006492 1.3e-120 437.2 366 60.1
SGA_v2.0_scaffold30G12409 Striga asiatica HOM05D004929 ORTHO05D006492 1.4e-119 433.7 268 78.4
COL.COLO4_29172 Corchorus olitorius HOM05D004929 ORTHO05D006492 8.7e-117 424.5 374 59.4
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 1.5e-116 423.7 272 73.9
Sc03g0007290 Simmondsia chinensis HOM05D004929 ORTHO05D006492 3.1e-114 416.0 274 70.8
Eucgr.I01731 Eucalyptus grandis HOM05D004929 ORTHO05D006492 9.0e-114 414.5 300 69.3
AagrBONN_evm.TU.Sc2ySwM_228.449 Anthoceros agrestis HOM05D000718 ORTHO05D002712 2.2e-112 409.8 342 60.8
A10p24090 Brassica napus HOM05D004929 ORTHO05D006492 4.8e-107 392.1 366 54.9
HPP92_026990 Vanilla planifolia HOM05D004929 ORTHO05D006492 6.2e-107 391.7 286 69.2
Mapoly0023s0058 Marchantia polymorpha HOM05D004929 ORTHO05D006492 1.1e-106 391.0 360 57.2
CBR_g3618 Chara braunii HOM05D004929 ORTHO05D006492 7.1e-103 378.3 366 54.1
Nitab4.5_0006683g0060 Nicotiana tabacum HOM05D004929 ORTHO05D006492 1.6e-102 377.1 373 54.7
Pp3c22_9380 Physcomitrium patens HOM05D004929 ORTHO05D006492 4.3e-100 369.0 267 64.0
Psat1g053480 Pisum sativum HOM05D004929 ORTHO05D006492 1.2e-97 360.9 272 66.9
SGA_v2.0_scaffold47G17516 Striga asiatica HOM05D004929 ORTHO05D006492 2.9e-96 356.3 352 55.7
Atru.chr6.2430 Acer truncatum HOM05D004929 ORTHO05D006492 1.1e-90 337.8 251 68.1
CDE07G0337 Ceratophyllum demersum HOM05D004929 ORTHO05D006492 4.6e-86 322.4 204 73.5
SHI25478 Sapria himalayana HOM05D004929 ORTHO05D006492 1.8e-85 320.5 304 57.6
Cre02.g107600 Chlamydomonas reinhardtii HOM05D004929 ORTHO05D006492 2.0e-84 317.0 370 48.4
BolC9t59108H Brassica oleracea HOM05D004929 ORTHO05D006492 2.1e-78 297.0 375 44.8
C09p62710 Brassica napus HOM05D004929 ORTHO05D006492 3.6e-78 296.2 366 44.8
MCO09G795 Micromonas commoda HOM05D004929 ORTHO05D006492 5.2e-77 292.4 370 45.4
PRCOL_00005101 Prasinoderma coloniale HOM05D004929 ORTHO05D006492 9.7e-76 288.1 372 46.2
Nitab4.5_0000040g0670 Nicotiana tabacum HOM05D004929 ORTHO05D006492 2.6e-73 280.0 375 45.6
Oeu033729.3 Olea europaea HOM05D004929 ORTHO05D006492 3.5e-65 253.1 231 60.6
Nitab4.5_0001550g0030 Nicotiana tabacum HOM05D004929 ORTHO05D006492 7.2e-63 245.4 257 54.5
MBI05_g01825_MAGBIO Magnolia biondii HOM05D004929 ORTHO05D006492 1.5e-60 237.7 217 56.7
BcaB08g36982 Brassica carinata HOM05D004929 ORTHO05D006492 1.4e-50 204.5 183 57.9
MSTRG.3285 Avicennia marina HOM05D004929 ORTHO05D006492 2.0e-49 200.7 131 74.8
Atru.chr6.2429 Acer truncatum HOM05D004929 ORTHO05D006492 2.6e-44 183.7 112 73.2
BolC9t59344H Brassica oleracea HOM05D004929 ORTHO05D006492 1.2e-41 174.9 210 48.1
CDE07G1161 Ceratophyllum demersum HOM05D004929 ORTHO05D043891 3.1e-29 133.7 133 56.4
BcaNung06761 Brassica carinata HOM05D004929 ORTHO05D006492 6.2e-22 109.4 70 70.0
MD17G1022500 Malus domestica HOM05D004929 ORTHO05D006492 3.1e-21 107.1 69 71.0
Sopen02g038030 Solanum pennellii HOM05D004929 ORTHO05D006492 5.4e-18 96.3 68 64.7
A10p26090 Brassica napus HOM05D004929 ORTHO05D006492 1.9e-15 87.8 207 33.8
arahy.Tifrunner.gnm1.ann1.6CI6DX Arachis hypogaea HOM05D004929 ORTHO05D031499 2.4e-10 70.9 44 70.5
Sp6g29550 Schrenkiella parvula HOM05D004929 ORTHO05D043891 4.2e-10 70.1 62 54.8
arahy.Tifrunner.gnm1.ann1.XQCE19 Arachis hypogaea HOM05D004929 ORTHO05D031499 6.0e-09 66.2 43 65.1
GSVIVG01027188001 Vitis vinifera HOM05D006425 ORTHO05D007312 3.6e-06 57.0 161 28.6
Cpa.g.sc139.7 Carica papaya HOM05D006425 ORTHO05D007312 8.1e-06 55.8 160 28.1


User provided reference genes

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