Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0824G173 Amborella trichopoda HOM05D004694 ORTHO05D006576 0.0e+00 1180.6 576 100.0
Thecc.03G124900 Theobroma cacao HOM05D004694 ORTHO05D006576 1.5e-256 889.4 546 76.7
Eucgr.K02748 Eucalyptus grandis HOM05D004694 ORTHO05D006576 1.9e-256 889.0 544 77.0
FAN08G1582 Fragaria x ananassa HOM05D004694 ORTHO05D006576 1.0e-254 883.2 554 76.0
CSS0001791 Camellia sinensis var. sinensis HOM05D004694 ORTHO05D006576 6.7e-254 880.6 551 76.8
Prupe.5G154600 Prunus persica HOM05D004694 ORTHO05D006576 8.8e-254 880.2 552 76.1
TAR622G1078 Trochodendron aralioides HOM05D004694 ORTHO05D006576 8.8e-254 880.2 578 74.4
FAN04G1296 Fragaria x ananassa HOM05D004694 ORTHO05D006576 1.2e-253 879.8 554 75.5
FvH4_5g07710 Fragaria vesca HOM05D004694 ORTHO05D006576 1.5e-253 879.4 554 75.6
Potri.015G092000 Populus trichocarpa HOM05D004694 ORTHO05D006576 1.5e-253 879.4 552 76.3
MD06G1147700 Malus domestica HOM05D004694 ORTHO05D006576 5.7e-253 877.5 556 76.1
CAN.G352.42 Capsicum annuum HOM05D004694 ORTHO05D006576 2.2e-252 875.5 551 75.9
THA.LOC104825008 Tarenaya hassleriana HOM05D004694 ORTHO05D006576 2.8e-252 875.2 546 77.1
Dinv04852 Davidia involucrata HOM05D004694 ORTHO05D006576 6.3e-252 874.0 565 75.2
FAN18G1141 Fragaria x ananassa HOM05D004694 ORTHO05D006576 6.3e-252 874.0 554 75.1
RcHm_v2.0_Chr7g0190721 Rosa chinensis HOM05D004694 ORTHO05D006576 6.3e-252 874.0 557 75.2
Duzib205G1411 Durio zibethinus HOM05D004694 ORTHO05D006576 8.2e-252 873.6 546 75.5
Ciclev10019499m.g Citrus clementina HOM05D004694 ORTHO05D006576 1.4e-251 872.8 551 76.4
Medtr8g028225 Medicago truncatula HOM05D004694 ORTHO05D006576 1.4e-251 872.8 544 75.2
TPR.G21293 Trifolium pratense HOM05D004694 ORTHO05D006576 1.8e-251 872.5 544 75.2
Nitab4.5_0001664g0050 Nicotiana tabacum HOM05D004694 ORTHO05D006576 7.0e-251 870.5 551 75.0
Atru.chr9.1027_Atru.chr9.1028 Acer truncatum HOM05D004694 ORTHO05D006576 9.1e-251 870.2 557 74.9
Cfa018868 Carpinus fangiana HOM05D004694 ORTHO05D006576 1.6e-250 869.4 567 74.4
Nitab4.5_0003680g0030 Nicotiana tabacum HOM05D004694 ORTHO05D006576 5.9e-250 867.5 551 75.0
Sopen03g030290 Solanum pennellii HOM05D004694 ORTHO05D006576 5.9e-250 867.5 551 74.6
Peaxi162Scf00089g00419 Petunia axillaris HOM05D004694 ORTHO05D006576 1.7e-249 865.9 551 75.1
Nn4g22401 Nelumbo nucifera HOM05D004694 ORTHO05D006576 2.9e-249 865.1 545 74.5
Solyc03g111130.1 Solanum lycopersicum HOM05D004694 ORTHO05D006576 2.9e-249 865.1 551 74.8
MELO3C002350.2 Cucumis melo HOM05D004694 ORTHO05D006576 3.8e-249 864.8 544 75.6
Solyc03g111140.3 Solanum lycopersicum HOM05D004694 ORTHO05D006576 5.0e-249 864.4 551 74.4
AL6G13430 Arabidopsis lyrata HOM05D004694 ORTHO05D006576 6.5e-249 864.0 545 75.2
Carub.0006s0280 Capsella rubella HOM05D004694 ORTHO05D006576 6.5e-249 864.0 545 75.6
CiPaw.11G010700 Carya illinoinensis HOM05D004694 ORTHO05D006576 6.5e-249 864.0 560 73.9
Rhsim12G0172800 Rhododendron simsii HOM05D004694 ORTHO05D006576 6.5e-249 864.0 569 73.3
arahy.Tifrunner.gnm1.ann1.C9ULKZ Arachis hypogaea HOM05D004694 ORTHO05D006576 8.5e-249 863.6 544 74.4
HanXRQChr05g0154041 Helianthus annuus HOM05D004694 ORTHO05D006576 8.5e-249 863.6 553 74.7
PGR044G1202 Punica granatum HOM05D004694 ORTHO05D006576 8.5e-249 863.6 546 75.3
Sp6g38870 Schrenkiella parvula HOM05D004694 ORTHO05D006576 8.5e-249 863.6 545 75.0
AT5G03860 Arabidopsis thaliana HOM05D004694 ORTHO05D006576 1.1e-248 863.2 545 75.4
arahy.Tifrunner.gnm1.ann1.EW3HTN Arachis hypogaea HOM05D004694 ORTHO05D006576 1.1e-248 863.2 544 74.6
ClCG03G003600 Citrullus lanatus HOM05D004694 ORTHO05D006576 1.1e-248 863.2 550 74.4
Aqoxy3G01456 Aquilegia oxysepala HOM05D004694 ORTHO05D006576 1.5e-248 862.8 548 74.6
arahy.Tifrunner.gnm1.ann1.18QE6Y Arachis hypogaea HOM05D004694 ORTHO05D006576 1.5e-248 862.8 544 74.4
CsaV3_1G009520 Cucumis sativus L. HOM05D004694 ORTHO05D006576 1.9e-248 862.4 544 75.4
Thhalv10015335m.g Eutrema salsugineum HOM05D004694 ORTHO05D006576 2.5e-248 862.1 545 75.0
Lj4g0028142 Lotus japonicus HOM05D004694 ORTHO05D006576 2.5e-248 862.1 554 73.6
arahy.Tifrunner.gnm1.ann1.J1V7G3 Arachis hypogaea HOM05D004694 ORTHO05D006576 3.2e-248 861.7 544 74.4
DCAR_016413 Daucus carota HOM05D004694 ORTHO05D006576 3.2e-248 861.7 552 74.8
Sopen03g030280 Solanum pennellii HOM05D004694 ORTHO05D006576 3.2e-248 861.7 551 74.2
arahy.Tifrunner.gnm1.ann1.HVKI9W Arachis hypogaea HOM05D004694 ORTHO05D006576 4.2e-248 861.3 544 74.4
ECA246G0215 Erigeron canadensis HOM05D004694 ORTHO05D006576 4.2e-248 861.3 549 75.0
Gohir.A07G053000 Gossypium hirsutum HOM05D004694 ORTHO05D006576 4.2e-248 861.3 546 74.2
Sabra15G0113800 Salix brachista HOM05D004694 ORTHO05D006576 4.2e-248 861.3 552 75.2
Gorai.001G060900 Gossypium raimondii HOM05D004694 ORTHO05D006576 7.2e-248 860.5 546 74.0
Lsat_1_v5_gn_5_13501 Lactuca sativa HOM05D004694 ORTHO05D006576 1.6e-247 859.4 559 74.8
Lalb_Chr07g0183271 Lupinus albus HOM05D004694 ORTHO05D006576 1.6e-247 859.4 544 74.3
VMungo1215G0651 Vigna mungo HOM05D004694 ORTHO05D006576 1.6e-247 859.4 547 74.0
Sed0009275 Sechium edule HOM05D004694 ORTHO05D006576 3.6e-247 858.2 544 74.6
BraA02t04789Z Brassica rapa HOM05D004694 ORTHO05D006576 4.7e-247 857.8 545 75.0
TWI39G0550 Tripterygium wilfordii HOM05D004694 ORTHO05D006576 4.7e-247 857.8 545 74.5
Gohir.D07G057400 Gossypium hirsutum HOM05D004694 ORTHO05D006576 6.1e-247 857.4 546 73.8
PGSC0003DMG400015192 Solanum tuberosum HOM05D004694 ORTHO05D006576 1.0e-246 856.7 551 73.9
CANSAT11G0344 Cannabis sativa HOM05D004694 ORTHO05D006576 2.3e-246 855.5 544 74.4
BolC2t06123H Brassica oleracea HOM05D004694 ORTHO05D006576 3.0e-246 855.1 545 74.7
PSO478G2802 Papaver somniferum HOM05D004694 ORTHO05D006576 5.2e-246 854.4 544 74.1
Hma1.2p1_0014F.1_g009775 Hydrangea macrophylla HOM05D004694 ORTHO05D006576 8.8e-246 853.6 548 73.7
Glyma.17G128000 Glycine max HOM05D004694 ORTHO05D006576 2.6e-245 852.0 544 73.3
C02p01580 Brassica napus HOM05D004694 ORTHO05D006576 3.4e-245 851.7 545 74.9
PSO017G1181 Papaver somniferum HOM05D004694 ORTHO05D006576 1.3e-244 849.7 544 73.7
vmacro16662 Vaccinium macrocarpon HOM05D004694 ORTHO05D006576 1.7e-244 849.4 586 70.5
CARHR209400 Cardamine hirsuta HOM05D004694 ORTHO05D006576 4.8e-244 847.8 545 73.8
Aa31LG1G21410 Aethionema arabicum HOM05D004694 ORTHO05D006576 1.4e-243 846.3 546 73.6
Migut.I00493 Erythranthe guttata HOM05D004694 ORTHO05D006576 2.0e-242 842.4 551 73.3
Lj5C97G9 Lonicera japonica HOM05D004694 ORTHO05D006576 1.0e-241 840.1 583 70.5
CDE09G0730 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 1.7e-241 839.3 544 72.8
VMungo1215G1303 Vigna mungo HOM05D004694 ORTHO05D006576 2.3e-241 839.0 544 73.7
Sc14g0007560 Simmondsia chinensis HOM05D004694 ORTHO05D006576 2.9e-241 838.6 544 72.4
Glyma.05G045900 Glycine max HOM05D004694 ORTHO05D006576 1.5e-240 836.3 544 72.4
Sopen03g030270 Solanum pennellii HOM05D004694 ORTHO05D006576 1.5e-240 836.3 551 72.4
BcaB05g21798 Brassica carinata HOM05D004694 ORTHO05D006576 5.5e-240 834.3 553 72.7
unitig_21.g20324 Utricularia gibba HOM05D004694 ORTHO05D006576 7.2e-240 833.9 544 73.0
PGSC0003DMG400015194 Solanum tuberosum HOM05D004694 ORTHO05D006576 1.6e-239 832.8 551 72.1
Glyma.17G128100 Glycine max HOM05D004694 ORTHO05D006576 2.8e-239 832.0 543 72.2
AUR62025866 Chenopodium quinoa HOM05D004694 ORTHO05D006576 2.3e-238 828.9 546 70.9
AUR62029660 Chenopodium quinoa HOM05D004694 ORTHO05D006576 2.3e-238 828.9 546 71.4
arahy.Tifrunner.gnm1.ann1.U91AM5 Arachis hypogaea HOM05D004694 ORTHO05D006576 5.2e-238 827.8 547 72.2
SGA_v2.0_scaffold80G25701 Striga asiatica HOM05D004694 ORTHO05D006576 8.9e-238 827.0 557 70.9
Phvul.003G209200 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 1.2e-237 826.6 547 71.8
QL10p004544 Quercus lobata HOM05D004694 ORTHO05D006576 5.7e-237 824.3 507 77.5
EL10As4g23460 Beta vulgaris HOM05D004694 ORTHO05D006576 9.8e-237 823.5 551 70.1
SalBow5G3571 Salvia bowleyana HOM05D004694 ORTHO05D006576 2.2e-236 822.4 551 72.1
CAN.G352.43 Capsicum annuum HOM05D004694 ORTHO05D006576 2.4e-235 818.9 544 71.5
Zm00001eb079170 Zea mays HOM05D004694 ORTHO05D006576 4.1e-235 818.1 547 71.7
HPP92_023361 Vanilla planifolia HOM05D004694 ORTHO05D006576 7.8e-234 813.9 546 70.5
Cpa.g.sc4.107 Carica papaya HOM05D004694 ORTHO05D006576 3.3e-232 808.5 573 69.1
Oeu044618.1 Olea europaea HOM05D004694 ORTHO05D006576 4.7e-231 804.7 538 72.3
SEGI_27575 Sequoiadendron giganteum HOM05D004694 ORTHO05D006576 1.8e-230 802.7 547 70.4
Os04g0486950 Oryza sativa ssp. japonica HOM05D004694 ORTHO05D006576 5.8e-229 797.7 552 70.5
MSTRG.9318 Avicennia marina HOM05D004694 ORTHO05D006576 3.7e-228 795.0 496 74.8
FAN13G0009 Fragaria x ananassa HOM05D004694 ORTHO05D006576 6.4e-228 794.3 580 67.4
Ah.11g044960 Amaranthus hybridus HOM05D004694 ORTHO05D006576 2.0e-226 789.3 544 67.8
SalBow1G3673 Salvia bowleyana HOM05D004694 ORTHO05D006576 5.0e-225 784.6 549 68.7
SalBow1G5430 Salvia bowleyana HOM05D004694 ORTHO05D006576 6.6e-225 784.3 549 68.7
Ca_23552_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 4.3e-224 781.6 544 69.5
Pp3c20_22510 Physcomitrium patens HOM05D004694 ORTHO05D006576 1.8e-222 776.2 546 67.6
SMO367G0555 Selaginella moellendorffii HOM05D004694 ORTHO05D006576 4.4e-221 771.5 545 68.4
Haze_07250 Corylus avellana HOM05D004694 ORTHO05D006576 2.9e-220 768.8 567 68.4
Actinidia08860 Actinidia chinensis HOM05D004694 ORTHO05D006576 8.3e-220 767.3 553 67.5
Cc04_g10080 Coffea canephora HOM05D004694 ORTHO05D006576 1.1e-219 766.9 561 68.3
Mapoly0154s0035 Marchantia polymorpha HOM05D004694 ORTHO05D006576 9.2e-219 763.8 546 67.8
AagrBONN_evm.TU.Sc2ySwM_117.2387 Anthoceros agrestis HOM05D004694 ORTHO05D006576 1.2e-215 753.4 543 67.8
MBI11_g05409_MAGBIO Magnolia biondii HOM05D004694 ORTHO05D006576 1.1e-214 750.4 558 67.4
GSVIVG01008494001 Vitis vinifera HOM05D004694 ORTHO05D006576 5.8e-213 744.6 542 67.7
CBR_g26132 Chara braunii HOM05D004694 ORTHO05D006576 2.9e-212 742.3 568 63.2
CDE08G1017 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 3.9e-209 731.9 508 69.7
AagrBONN_evm.TU.Sc2ySwM_228.3843 Anthoceros agrestis HOM05D004694 ORTHO05D006576 9.5e-208 727.2 546 65.2
Dinv11097 Davidia involucrata HOM05D004694 ORTHO05D006576 5.2e-206 721.5 449 77.1
COL.COLO4_28061 Corchorus olitorius HOM05D004694 ORTHO05D006576 5.4e-195 684.9 546 62.6
Manes.14G054100 Manihot esculenta HOM05D004694 ORTHO05D006576 1.4e-190 670.2 426 75.4
QL10p004639 Quercus lobata HOM05D004694 ORTHO05D006576 1.2e-189 667.2 419 76.4
SalBow1G1465 Salvia bowleyana HOM05D004694 ORTHO05D006576 7.6e-181 637.9 539 60.3
SalBow1G5822 Salvia bowleyana HOM05D004694 ORTHO05D006576 7.6e-181 637.9 539 60.3
TAR374G0737 Trochodendron aralioides HOM05D004694 ORTHO05D002940 3.8e-172 609.0 610 54.9
Cre03.g144807 Chlamydomonas reinhardtii HOM05D004694 ORTHO05D006576 7.4e-152 541.6 548 52.9
Phvul.003G209101 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 8.8e-145 518.1 328 74.7
Psat4g158240 Pisum sativum HOM05D004694 ORTHO05D006576 1.8e-142 510.4 324 75.0
Actinidia36796 Actinidia chinensis HOM05D004694 ORTHO05D006576 1.5e-139 500.7 554 51.3
arahy.Tifrunner.gnm1.ann1.SX4PQT Arachis hypogaea HOM05D004694 ORTHO05D006576 2.9e-124 449.9 286 73.4
HPP92_023371 Vanilla planifolia HOM05D004694 ORTHO05D006576 9.5e-123 444.9 305 70.8
Ca_23555_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 3.7e-111 406.4 260 72.7
Hund10205 Selenicereus undatus HOM05D004694 ORTHO05D006576 7.0e-110 402.1 360 59.2
Potri.012G094532 Populus trichocarpa HOM05D004694 ORTHO05D006576 2.6e-96 357.1 199 83.9
SalBow1G0618 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.0e-76 292.0 505 39.0
AagrBONN_evm.TU.Sc2ySwM_344.4962 Anthoceros agrestis HOM05D004694 ORTHO05D006576 2.6e-72 277.3 335 45.1
BcaB01g05780 Brassica carinata HOM05D004694 ORTHO05D006576 1.6e-61 241.5 188 62.2
Duzib068G0556 Durio zibethinus HOM05D004694 ORTHO05D006576 4.2e-54 216.9 139 72.7
PGSC0003DMG402015193 Solanum tuberosum HOM05D004694 ORTHO05D016782 1.7e-47 194.9 134 70.9
arahy.Tifrunner.gnm1.ann1.0V01Q6 Arachis hypogaea HOM05D004694 ORTHO05D006576 2.8e-42 177.6 111 71.2
SalBow1G0228 Salvia bowleyana HOM05D004694 ORTHO05D006576 8.2e-42 176.0 119 71.4
VMungo1383G1618 Vigna mungo HOM05D004694 ORTHO05D046692 3.4e-40 170.6 110 68.2
Ca_29801_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 1.7e-39 168.3 111 66.7
PGSC0003DMG401015193 Solanum tuberosum HOM05D004694 ORTHO05D006576 1.0e-36 159.1 76 92.1
BcaC08g44622 Brassica carinata HOM05D004694 ORTHO05D016782 1.4e-36 158.7 125 60.8
BraA09t39454Z Brassica rapa HOM05D002984 ORTHO05D003561 8.8e-36 156.0 128 59.4
Glyma.05G045851 Glycine max HOM05D004694 ORTHO05D046692 6.3e-34 149.8 96 70.8
A03p11210 Brassica napus HOM05D004694 ORTHO05D016782 1.4e-33 148.7 125 57.6
C06p36560 Brassica napus HOM05D004694 ORTHO05D016782 1.4e-33 148.7 125 57.6
C06p20980 Brassica napus HOM05D004694 ORTHO05D016782 1.1e-30 139.0 116 56.9
BolC6t37284H Brassica oleracea HOM05D004694 ORTHO05D016782 1.1e-30 139.0 116 56.9
A09p39550 Brassica napus HOM05D004694 ORTHO05D016782 4.7e-29 133.7 117 55.6
BraA01t01659Z Brassica rapa HOM05D004694 ORTHO05D016782 4.7e-29 133.7 117 55.6
Ca_28596_v3 Cicer arietinum L. HOM05D004694 ORTHO05D148954 2.2e-26 124.8 124 48.4
SalBow1G3079 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.5e-22 112.1 72 70.8
Ca_03499_v3 Cicer arietinum L. HOM05D004694 ORTHO05D016782 2.3e-20 104.8 80 62.5
MD14G1161700 Malus domestica HOM05D004694 ORTHO05D248771 1.2e-19 102.4 189 37.6
AUR62040389 Chenopodium quinoa HOM05D003382 ORTHO05D003930 4.8e-18 97.1 74 63.5
Glyma.19G088650 Glycine max HOM05D004694 ORTHO05D213888 5.4e-17 93.6 60 66.7
Pp3s42_50 Physcomitrium patens HOM05D065563 ORTHO05D309536 1.6e-08 65.5 286 23.4
MD14G1161800 Malus domestica HOM05D004694 ORTHO05D016782 4.3e-06 57.4 52 51.9


User provided reference genes

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