Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0807G210 Amborella trichopoda HOM05D005561 ORTHO05D006834 0.0e+00 1330.5 648 100.0
Lj4C7T6 Lonicera japonica HOM05D005561 ORTHO05D006834 2.0e-166 590.1 613 51.5
CSS0019163 Camellia sinensis var. sinensis HOM05D005561 ORTHO05D006834 3.0e-165 586.3 613 50.4
PSO170G1066 Papaver somniferum HOM05D005561 ORTHO05D006834 1.9e-164 583.6 623 50.2
PSO210G6209 Papaver somniferum HOM05D005561 ORTHO05D006834 1.9e-164 583.6 600 51.3
Aqoxy5G00977 Aquilegia oxysepala HOM05D005561 ORTHO05D006834 1.6e-163 580.5 605 51.9
CSS0027936 Camellia sinensis var. sinensis HOM05D005561 ORTHO05D006834 1.1e-162 577.8 609 50.2
Dinv31967 Davidia involucrata HOM05D005561 ORTHO05D006834 1.1e-162 577.8 615 50.2
vmacro21786 Vaccinium macrocarpon HOM05D005561 ORTHO05D006834 2.6e-161 573.2 611 49.9
COL.COLO4_35541 Corchorus olitorius HOM05D005561 ORTHO05D006834 3.4e-161 572.8 612 49.8
Thecc.08G062600 Theobroma cacao HOM05D005561 ORTHO05D006834 1.7e-160 570.5 607 50.6
Nn5g31005 Nelumbo nucifera HOM05D005561 ORTHO05D006834 4.9e-160 568.9 603 50.1
Rhsim06G0005100 Rhododendron simsii HOM05D005561 ORTHO05D006834 4.9e-160 568.9 611 48.9
Gorai.002G114500 Gossypium raimondii HOM05D005561 ORTHO05D006834 8.3e-160 568.2 605 50.1
Gohir.A01G103500 Gossypium hirsutum HOM05D005561 ORTHO05D006834 1.1e-159 567.8 605 49.9
AUR62042576 Chenopodium quinoa HOM05D005561 ORTHO05D006834 1.4e-159 567.4 610 48.5
Gohir.D01G088800 Gossypium hirsutum HOM05D005561 ORTHO05D006834 1.9e-159 567.0 605 50.2
Manes.05G124800 Manihot esculenta HOM05D005561 ORTHO05D006834 1.9e-159 567.0 627 49.9
Haze_22832 Corylus avellana HOM05D005561 ORTHO05D006834 7.1e-159 565.1 613 50.6
AUR62035143 Chenopodium quinoa HOM05D005561 ORTHO05D006834 9.2e-159 564.7 611 48.4
QL02p015136 Quercus lobata HOM05D005561 ORTHO05D006834 9.2e-159 564.7 615 49.6
Eucgr.F01790 Eucalyptus grandis HOM05D005561 ORTHO05D006834 1.6e-158 563.9 609 49.8
Prupe.5G009000 Prunus persica HOM05D005561 ORTHO05D006834 2.1e-158 563.5 613 50.2
Cfa014114 Carpinus fangiana HOM05D005561 ORTHO05D006834 3.5e-158 562.8 613 50.6
Medtr3g115870 Medicago truncatula HOM05D005561 ORTHO05D006834 3.5e-158 562.8 603 49.9
PGSC0003DMG400009989 Solanum tuberosum HOM05D005561 ORTHO05D006834 1.0e-157 561.2 611 49.3
Duzib041G0482 Durio zibethinus HOM05D005561 ORTHO05D006834 1.3e-157 560.8 613 49.3
CANSAT78G2155 Cannabis sativa HOM05D005561 ORTHO05D006834 5.1e-157 558.9 615 49.4
FAN18G1577 Fragaria x ananassa HOM05D005561 ORTHO05D006834 5.1e-157 558.9 596 50.0
Sopen04g036210 Solanum pennellii HOM05D005561 ORTHO05D006834 5.1e-157 558.9 611 49.3
TWI56G0057 Tripterygium wilfordii HOM05D005561 ORTHO05D006834 6.6e-157 558.5 615 49.4
Sc02g0009190 Simmondsia chinensis HOM05D005561 ORTHO05D006834 8.6e-157 558.1 613 48.9
FAN13G3253 Fragaria x ananassa HOM05D005561 ORTHO05D006834 1.1e-156 557.8 617 49.3
Lj1g0007073 Lotus japonicus HOM05D005561 ORTHO05D006834 1.1e-156 557.8 606 50.3
Solyc04g082580.3 Solanum lycopersicum HOM05D005561 ORTHO05D006834 1.5e-156 557.4 603 49.4
Potri.002G007700 Populus trichocarpa HOM05D005561 ORTHO05D006834 2.5e-156 556.6 617 48.6
Sabra05G0196600 Salix brachista HOM05D005561 ORTHO05D006834 3.3e-156 556.2 621 49.8
EL10Ac1g01911 Beta vulgaris HOM05D005561 ORTHO05D006834 4.3e-156 555.8 615 48.1
FvH4_5g25640 Fragaria vesca HOM05D005561 ORTHO05D006834 7.3e-156 555.1 591 50.1
FAN04G1314 Fragaria x ananassa HOM05D005561 ORTHO05D006834 7.3e-156 555.1 601 49.6
Ciclev10000678m.g Citrus clementina HOM05D005561 ORTHO05D006834 1.6e-155 553.9 605 49.4
DCAR_016786 Daucus carota HOM05D005561 ORTHO05D006834 2.1e-155 553.5 615 47.5
CAN.G311.134 Capsicum annuum HOM05D005561 ORTHO05D006834 2.8e-155 553.1 613 48.6
ClCG08G009280 Citrullus lanatus HOM05D005561 ORTHO05D006834 2.8e-155 553.1 604 49.5
FAN08G1213 Fragaria x ananassa HOM05D005561 ORTHO05D006834 2.8e-155 553.1 601 49.4
Ah.11g041760 Amaranthus hybridus HOM05D005561 ORTHO05D006834 4.7e-155 552.4 613 47.3
arahy.Tifrunner.gnm1.ann1.NG9QQJ Arachis hypogaea HOM05D005561 ORTHO05D006834 4.7e-155 552.4 600 49.5
RcHm_v2.0_Chr7g0215931 Rosa chinensis HOM05D005561 ORTHO05D006834 6.2e-155 552.0 596 49.3
Psat5g009720 Pisum sativum HOM05D005561 ORTHO05D006834 1.1e-154 551.2 619 49.6
CiPaw.07G135900 Carya illinoinensis HOM05D005561 ORTHO05D006834 2.4e-154 550.1 612 49.2
Cc10_g00480 Coffea canephora HOM05D005561 ORTHO05D006834 2.4e-154 550.1 613 48.1
Potri.005G253500 Populus trichocarpa HOM05D005561 ORTHO05D006834 3.1e-154 549.7 617 48.9
VMungo1309G3038 Vigna mungo HOM05D005561 ORTHO05D006834 3.1e-154 549.7 604 49.7
Ca_15401_v3 Cicer arietinum L. HOM05D005561 ORTHO05D006834 4.0e-154 549.3 604 49.7
TPR.G38189 Trifolium pratense HOM05D005561 ORTHO05D006834 4.0e-154 549.3 613 50.2
MELO3C026526.2 Cucumis melo HOM05D005561 ORTHO05D006834 8.9e-154 548.1 607 49.1
Duzib116G0146 Durio zibethinus HOM05D005561 ORTHO05D006834 8.9e-154 548.1 604 48.8
CsaV3_6G031410 Cucumis sativus L. HOM05D005561 ORTHO05D006834 2.0e-153 547.0 607 49.1
MSTRG.22092 Avicennia marina HOM05D005561 ORTHO05D006834 7.6e-153 545.0 604 48.3
MD06G1007100 Malus domestica HOM05D005561 ORTHO05D006834 7.6e-153 545.0 607 48.8
MBI05_g33302_MAGBIO Magnolia biondii HOM05D005561 ORTHO05D006834 1.3e-152 544.3 670 46.4
Duzib093G0247 Durio zibethinus HOM05D005561 ORTHO05D006834 2.9e-152 543.1 609 48.6
Glyma.04G016300 Glycine max HOM05D005561 ORTHO05D006834 6.4e-152 542.0 603 48.8
Nitab4.5_0001208g0070 Nicotiana tabacum HOM05D005561 ORTHO05D006834 6.4e-152 542.0 611 48.6
Phvul.009G012500 Phaseolus vulgaris HOM05D005561 ORTHO05D006834 1.4e-151 540.8 604 48.5
Glyma.06G016400 Glycine max HOM05D005561 ORTHO05D006834 1.9e-151 540.4 601 48.9
TWI36G1622 Tripterygium wilfordii HOM05D005561 ORTHO05D006834 4.1e-151 539.3 615 48.3
MD00G1113700 Malus domestica HOM05D005561 ORTHO05D006834 5.4e-151 538.9 606 48.3
SalBow1G8439 Salvia bowleyana HOM05D005561 ORTHO05D006834 9.2e-151 538.1 617 47.8
PGR083G0762 Punica granatum HOM05D005561 ORTHO05D006834 1.6e-150 537.3 603 48.3
SalBow7G4605 Salvia bowleyana HOM05D005561 ORTHO05D006834 1.6e-150 537.3 617 47.6
Lalb_Chr11g0061481 Lupinus albus HOM05D005561 ORTHO05D006834 1.3e-149 534.3 611 48.3
Lalb_Chr23g0265661 Lupinus albus HOM05D005561 ORTHO05D006834 1.3e-149 534.3 608 48.8
Sed0010562 Sechium edule HOM05D005561 ORTHO05D006834 1.7e-149 533.9 601 48.8
Migut.N02971 Erythranthe guttata HOM05D005561 ORTHO05D006834 6.6e-149 531.9 601 47.3
Nitab4.5_0000383g0380 Nicotiana tabacum HOM05D005561 ORTHO05D006834 4.3e-148 529.3 614 47.9
Oeu016877.1 Olea europaea HOM05D005561 ORTHO05D006834 1.2e-147 527.7 582 48.5
ECA232G0027 Erigeron canadensis HOM05D005561 ORTHO05D006834 6.2e-147 525.4 606 46.7
Peaxi162Scf00680g00110 Petunia axillaris HOM05D005561 ORTHO05D006834 1.1e-146 524.6 552 49.1
MSTRG.992 Avicennia marina HOM05D005561 ORTHO05D006834 3.1e-146 523.1 558 49.5
SEGI_19604 Sequoiadendron giganteum HOM05D005561 ORTHO05D006834 5.8e-145 518.8 709 42.3
SalBow6G7068 Salvia bowleyana HOM05D005561 ORTHO05D006834 4.9e-144 515.8 603 46.4
HanXRQChr15g0492491 Helianthus annuus HOM05D005561 ORTHO05D006834 5.4e-143 512.3 617 45.7
SEGI_32322 Sequoiadendron giganteum HOM05D005561 ORTHO05D006834 1.6e-142 510.8 666 43.4
Sabra02G0006100 Salix brachista HOM05D005561 ORTHO05D006834 2.1e-142 510.4 578 47.9
Cpa.g.sc26.163 Carica papaya HOM05D005561 ORTHO05D006834 3.5e-142 509.6 618 47.4
Lsat_1_v5_gn_9_45721 Lactuca sativa HOM05D005561 ORTHO05D006834 6.0e-142 508.8 609 46.1
THA.LOC104801947 Tarenaya hassleriana HOM05D005561 ORTHO05D006834 3.9e-141 506.1 613 46.0
HanXRQChr05g0144831 Helianthus annuus HOM05D005561 ORTHO05D006834 5.1e-141 505.8 603 45.6
Aa31LG9G12500 Aethionema arabicum HOM05D005561 ORTHO05D006834 4.0e-138 496.1 602 47.2
Actinidia17061 Actinidia chinensis HOM05D005561 ORTHO05D006834 4.9e-136 489.2 537 49.0
unitig_22.g5815 Utricularia gibba HOM05D005561 ORTHO05D006834 7.1e-135 485.3 604 44.4
Thhalv10003171m.g Eutrema salsugineum HOM05D005561 ORTHO05D006834 6.0e-134 482.3 601 45.6
ECA238G1647 Erigeron canadensis HOM05D005561 ORTHO05D006834 4.0e-130 469.5 574 46.0
SGA_v2.0_scaffold54G19641 Striga asiatica HOM05D005561 ORTHO05D006834 2.9e-128 463.4 602 42.0
AL8G19230 Arabidopsis lyrata HOM05D005561 ORTHO05D006834 3.2e-127 459.9 602 43.2
Carub.0008s0680 Capsella rubella HOM05D005561 ORTHO05D006834 5.1e-125 452.6 602 42.9
AT5G42350 Arabidopsis thaliana HOM05D005561 ORTHO05D006834 1.1e-124 451.4 601 42.9
HanXRQChr06g0185211 Helianthus annuus HOM05D005561 ORTHO05D006834 1.1e-124 451.4 606 43.9
BcaC04g22001 Brassica carinata HOM05D005561 ORTHO05D006834 4.3e-124 449.5 603 43.4
AL8G19220 Arabidopsis lyrata HOM05D005561 ORTHO05D006834 5.6e-124 449.1 608 43.1
C09p24980 Brassica napus HOM05D005561 ORTHO05D006834 1.3e-123 448.0 604 43.2
BolC9t55390H Brassica oleracea HOM05D005561 ORTHO05D006834 4.8e-123 446.0 604 43.0
AT5G42360 Arabidopsis thaliana HOM05D005561 ORTHO05D006834 1.1e-122 444.9 601 42.4
CARHR284980 Cardamine hirsuta HOM05D005561 ORTHO05D006834 1.1e-122 444.9 601 42.4
Sp7g08210 Schrenkiella parvula HOM05D005561 ORTHO05D006834 5.3e-122 442.6 599 41.7
A09p19610 Brassica napus HOM05D005561 ORTHO05D006834 1.3e-120 438.0 604 42.5
BcaB07g31083 Brassica carinata HOM05D005561 ORTHO05D006834 2.9e-120 436.8 606 42.6
BraA09t37572Z Brassica rapa HOM05D005561 ORTHO05D006834 3.2e-119 433.3 604 42.2
Lsat_1_v5_gn_2_1901 Lactuca sativa HOM05D005561 ORTHO05D006834 3.3e-116 423.3 589 41.9
BcaNung05251 Brassica carinata HOM05D005561 ORTHO05D006834 3.4e-113 413.3 606 41.6
Oeu026110.1 Olea europaea HOM05D005561 ORTHO05D006834 2.9e-104 383.6 393 48.9
Zm00001eb320670 Zea mays HOM05D005561 ORTHO05D006834 1.9e-103 380.9 462 45.0
GSVIVG01013397001 Vitis vinifera HOM05D005561 ORTHO05D006834 6.7e-101 372.5 613 38.5
Os09g0555300 Oryza sativa ssp. japonica HOM05D005561 ORTHO05D006834 2.8e-99 367.1 464 42.7
Mapoly0107s0031 Marchantia polymorpha HOM05D005561 ORTHO05D006834 5.3e-98 362.8 536 40.3
AUR62042579 Chenopodium quinoa HOM05D005561 ORTHO05D006834 2.6e-97 360.5 610 36.9
CARHR284990 Cardamine hirsuta HOM05D005561 ORTHO05D006834 1.7e-88 331.3 458 37.3
CDE05G2424 Ceratophyllum demersum HOM05D005561 ORTHO05D006834 2.1e-78 297.7 600 33.8
Atru.chr13.103 Acer truncatum HOM05D005561 ORTHO05D006834 1.4e-77 295.0 214 65.4
Ciclev10009595m.g Citrus clementina HOM05D005561 ORTHO05D006834 2.6e-60 237.7 180 63.3
TAR376G1058 Trochodendron aralioides HOM05D005561 ORTHO05D006834 3.3e-55 220.7 256 47.3
Nitab4.5_0009646g0070 Nicotiana tabacum HOM05D005561 ORTHO05D006834 1.4e-50 205.3 611 28.6
TPR.G26790 Trifolium pratense HOM05D005561 ORTHO05D006834 2.3e-48 198.0 429 29.8
Atru.chr13.102 Acer truncatum HOM05D005561 ORTHO05D006834 1.8e-45 188.3 184 47.3
TAR376G0177 Trochodendron aralioides HOM05D005561 ORTHO05D006834 3.2e-34 151.0 114 64.0
SMO270G0041 Selaginella moellendorffii HOM05D005561 ORTHO05D006834 5.4e-34 150.2 171 40.9
Sc15g0004200 Simmondsia chinensis HOM05D005561 ORTHO05D006834 2.1e-33 148.3 291 31.6
TPR.G28384 Trifolium pratense HOM05D005561 ORTHO05D006834 2.5e-31 141.4 339 31.6
Mapoly1710s0002 Marchantia polymorpha HOM05D005561 ORTHO05D006834 2.4e-29 134.8 418 25.8
Medtr3g032780 Medicago truncatula HOM05D005561 ORTHO05D006834 3.1e-29 134.4 427 28.6
AagrBONN_evm.TU.Sc2ySwM_228.4410 Anthoceros agrestis HOM05D005561 ORTHO05D006834 3.0e-16 91.3 154 36.4
Mapoly0119s0024 Marchantia polymorpha HOM05D007853 ORTHO05D009873 3.5e-09 67.8 445 22.5
Medtr3g032830 Medicago truncatula HOM05D005561 ORTHO05D006834 6.0e-09 67.0 132 32.6
Medtr1g096890 Medicago truncatula HOM05D005561 ORTHO05D006834 2.3e-08 65.1 95 34.7
SEGI_10708 Sequoiadendron giganteum HOM05D000667 ORTHO05D003095 3.0e-08 64.7 199 30.2
AT3G61590 Arabidopsis thaliana HOM05D003005 ORTHO05D004170 1.5e-07 62.4 373 22.5
AagrBONN_evm.TU.Sc2ySwM_117.2857 Anthoceros agrestis HOM05D002809 ORTHO05D004939 4.3e-07 60.8 125 34.4
CSS0002746 Camellia sinensis var. sinensis HOM05D000667 ORTHO05D004096 5.6e-07 60.5 113 34.5
CSS0004812 Camellia sinensis var. sinensis HOM05D000667 ORTHO05D004096 5.6e-07 60.5 113 34.5
Lalb_Chr04g0261791 Lupinus albus HOM05D003005 ORTHO05D004170 5.6e-07 60.5 342 21.3
BcaC07g42677 Brassica carinata HOM05D003005 ORTHO05D004170 9.6e-07 59.7 332 22.0
Prupe.1G085800 Prunus persica HOM05D005561 ORTHO05D006834 9.6e-07 59.7 82 45.1
BolC4t24659H Brassica oleracea HOM05D003005 ORTHO05D004170 1.6e-06 58.9 319 23.2
BraA09t40787Z Brassica rapa HOM05D003005 ORTHO05D004170 1.6e-06 58.9 332 22.0
CARHR171900 Cardamine hirsuta HOM05D003005 ORTHO05D004170 1.6e-06 58.9 303 23.4
AagrBONN_evm.TU.Sc2ySwM_344.243 Anthoceros agrestis HOM05D005500 ORTHO05D006906 2.1e-06 58.5 98 34.7
C08p36430 Brassica napus HOM05D003005 ORTHO05D004170 2.1e-06 58.5 335 22.1
BolC8t51226H Brassica oleracea HOM05D003005 ORTHO05D004170 2.1e-06 58.5 335 22.1
Thhalv10005970m.g Eutrema salsugineum HOM05D003005 ORTHO05D004170 2.8e-06 58.2 165 24.2
AL5G43980 Arabidopsis lyrata HOM05D003005 ORTHO05D004170 3.7e-06 57.8 165 23.6
BcaC02g10235 Brassica carinata HOM05D003005 ORTHO05D004170 3.7e-06 57.8 319 22.6
THA.LOC104802052 Tarenaya hassleriana HOM05D003005 ORTHO05D004170 3.7e-06 57.8 139 24.5
VMungo1080G0280 Vigna mungo HOM05D005561 ORTHO05D006834 3.7e-06 57.8 96 41.7
AL6G26540 Arabidopsis lyrata HOM05D004302 ORTHO05D004939 4.8e-06 57.4 165 25.5
AT5G15710 Arabidopsis thaliana HOM05D004302 ORTHO05D004939 4.8e-06 57.4 165 25.5
BraA07t30201Z Brassica rapa HOM05D003005 ORTHO05D004170 6.2e-06 57.0 151 23.8
BcaB01g05031 Brassica carinata HOM05D004302 ORTHO05D004939 8.2e-06 56.6 151 27.2
BcaC07g42676 Brassica carinata HOM05D003005 ORTHO05D004170 8.2e-06 56.6 168 23.2
A07p25600 Brassica napus HOM05D003005 ORTHO05D004170 8.2e-06 56.6 151 23.8
Dinv37565 Davidia involucrata HOM05D003005 ORTHO05D004170 8.2e-06 56.6 157 27.4
Sp5g01820 Schrenkiella parvula HOM05D003005 ORTHO05D004170 8.2e-06 56.6 165 23.0
unitig_747.g21324 Utricularia gibba HOM05D003005 ORTHO05D004170 8.2e-06 56.6 318 23.9
HPP92_009599 Vanilla planifolia HOM05D000667 ORTHO05D002614 8.2e-06 56.6 148 26.4


User provided reference genes

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