Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0807G053 Amborella trichopoda HOM05D004013 ORTHO05D004710 6.6e-50 200.3 93 100.0
ATR0706G248 Amborella trichopoda HOM05D004013 ORTHO05D004710 3.1e-15 85.1 47 83.0
Nn1g09391 Nelumbo nucifera HOM05D004013 ORTHO05D004710 2.9e-13 78.6 47 74.5
MBI15_g08971_MAGBIO Magnolia biondii HOM05D004013 ORTHO05D004710 1.9e-12 75.9 53 66.0
CSS0003826 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 5.4e-12 74.3 47 72.3
Lalb_Chr01g0021691 Lupinus albus HOM05D004013 ORTHO05D004710 7.1e-12 73.9 45 73.3
Potri.017G000500 Populus trichocarpa HOM05D004013 ORTHO05D004710 7.1e-12 73.9 48 70.8
arahy.Tifrunner.gnm1.ann1.AL59ZJ Arachis hypogaea HOM05D004013 ORTHO05D004710 1.2e-11 73.2 52 63.5
Rhsim09G0091900 Rhododendron simsii HOM05D004013 ORTHO05D004710 1.2e-11 73.2 47 72.3
vmacro09116 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 1.2e-11 73.2 47 70.2
CSS0004368 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 1.6e-11 72.8 47 70.2
CSS0048139 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 1.6e-11 72.8 47 70.2
Glyma.18G248400 Glycine max HOM05D004013 ORTHO05D004710 2.1e-11 72.4 47 66.0
Sabra17G0005400 Salix brachista HOM05D004013 ORTHO05D004710 2.1e-11 72.4 48 68.8
arahy.Tifrunner.gnm1.ann1.M4STP7 Arachis hypogaea HOM05D004013 ORTHO05D004710 2.7e-11 72.0 50 66.0
Ciclev10019906m.g Citrus clementina HOM05D004013 ORTHO05D004710 2.7e-11 72.0 50 66.0
Os04g0682000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 2.7e-11 72.0 47 66.0
vmacro10687 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 2.7e-11 72.0 47 68.1
Potri.007G147100 Populus trichocarpa HOM05D004013 ORTHO05D004710 3.5e-11 71.6 47 70.2
TAR633G1686 Trochodendron aralioides HOM05D004013 ORTHO05D004710 3.5e-11 71.6 50 66.0
Zm00001eb433950 Zea mays HOM05D004013 ORTHO05D004710 3.5e-11 71.6 47 63.8
Ca_08048_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 4.6e-11 71.2 47 66.0
Ca_08054_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 4.6e-11 71.2 47 66.0
MELO3C008520.2 Cucumis melo HOM05D004013 ORTHO05D004710 4.6e-11 71.2 47 70.2
Medtr7g081230 Medicago truncatula HOM05D004013 ORTHO05D004710 4.6e-11 71.2 47 66.0
Phvul.008G048900 Phaseolus vulgaris HOM05D004013 ORTHO05D004710 4.6e-11 71.2 47 68.1
Psat0s3112g0040 Pisum sativum HOM05D004013 ORTHO05D004710 4.6e-11 71.2 47 66.0
TPR.G29111 Trifolium pratense HOM05D004013 ORTHO05D004710 4.6e-11 71.2 47 66.0
TAR365G0341 Trochodendron aralioides HOM05D004013 ORTHO05D004710 4.6e-11 71.2 50 64.0
VMungo1383G0353 Vigna mungo HOM05D004013 ORTHO05D004710 4.6e-11 71.2 47 68.1
Glyma.09G244800 Glycine max HOM05D004013 ORTHO05D004710 6.0e-11 70.9 47 66.0
Actinidia29461 Actinidia chinensis HOM05D004013 ORTHO05D004710 7.8e-11 70.5 47 68.1
Zm00001eb065800 Zea mays HOM05D004013 ORTHO05D004710 1.0e-10 70.1 47 63.8
Os03g0391000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 1.7e-10 69.3 47 63.8
arahy.Tifrunner.gnm1.ann1.ERJ0Z2 Arachis hypogaea HOM05D004013 ORTHO05D004710 2.3e-10 68.9 47 66.0
arahy.Tifrunner.gnm1.ann1.LVD0DC Arachis hypogaea HOM05D004013 ORTHO05D004710 2.3e-10 68.9 47 66.0
CsaV3_2G011360 Cucumis sativus L. HOM05D004013 ORTHO05D004710 2.3e-10 68.9 47 68.1
Sed0016347 Sechium edule HOM05D004013 ORTHO05D004710 2.3e-10 68.9 47 66.0
THA.LOC104808419 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 2.3e-10 68.9 47 66.0
Zm00001eb419970 Zea mays HOM05D004013 ORTHO05D004710 2.3e-10 68.9 47 63.8
Gohir.D12G001900 Gossypium hirsutum HOM05D004013 ORTHO05D004710 3.0e-10 68.6 47 66.0
Gorai.008G001300 Gossypium raimondii HOM05D004013 ORTHO05D004710 3.0e-10 68.6 47 66.0
BcaB02g08204 Brassica carinata HOM05D004013 ORTHO05D004710 3.9e-10 68.2 47 66.0
A09p52290 Brassica napus HOM05D004013 ORTHO05D004710 3.9e-10 68.2 47 68.1
BraA04t15923Z Brassica rapa HOM05D004013 ORTHO05D004710 3.9e-10 68.2 47 68.1
BraA09t40658Z Brassica rapa HOM05D004013 ORTHO05D004710 3.9e-10 68.2 47 68.1
Duzib147G1378 Durio zibethinus HOM05D004013 ORTHO05D004710 3.9e-10 68.2 50 62.0
Lj1g0014615 Lotus japonicus HOM05D004013 ORTHO05D004710 3.9e-10 68.2 47 63.8
Atru.chr3.2025 Acer truncatum HOM05D004013 ORTHO05D004710 5.1e-10 67.8 45 68.9
AT3G59950 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 5.1e-10 67.8 47 66.0
Cpa.g.sc9.235 Carica papaya HOM05D004013 ORTHO05D004710 6.6e-10 67.4 47 63.8
Dinv28066 Davidia involucrata HOM05D004013 ORTHO05D004710 6.6e-10 67.4 50 60.0
Thhalv10001432m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 6.6e-10 67.4 63 54.0
FAN15G0687 Fragaria x ananassa HOM05D004013 ORTHO05D004710 6.6e-10 67.4 45 66.7
FAN20G2928 Fragaria x ananassa HOM05D004013 ORTHO05D004710 6.6e-10 67.4 45 66.7
FAN27G1923 Fragaria x ananassa HOM05D004013 ORTHO05D004710 6.6e-10 67.4 45 66.7
Sed0011939 Sechium edule HOM05D004013 ORTHO05D004710 6.6e-10 67.4 47 66.0
Gohir.A12G002200 Gossypium hirsutum HOM05D004013 ORTHO05D004710 8.7e-10 67.0 47 63.8
Sp5g03230 Schrenkiella parvula HOM05D004013 ORTHO05D004710 8.7e-10 67.0 47 66.0
SGA_v2.0_scaffold37G14795 Striga asiatica HOM05D004013 ORTHO05D004710 8.7e-10 67.0 47 61.7
ClCG06G010000 Citrullus lanatus HOM05D004013 ORTHO05D004710 1.1e-09 66.6 47 66.0
PSO732G0206 Papaver somniferum HOM05D004013 ORTHO05D004710 1.1e-09 66.6 47 59.6
QL05p046231 Quercus lobata HOM05D004013 ORTHO05D004710 1.1e-09 66.6 50 60.0
SHI01175 Sapria himalayana HOM05D004013 ORTHO05D004710 1.1e-09 66.6 47 66.0
TWI15G0551 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 1.1e-09 66.6 47 63.8
TWI63G0479 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 1.1e-09 66.6 47 63.8
GSVIVG01003913001 Vitis vinifera HOM05D004013 ORTHO05D004710 1.1e-09 66.6 47 61.7
BcaC02g10096 Brassica carinata HOM05D004013 ORTHO05D004710 1.5e-09 66.2 47 66.0
A04p01980 Brassica napus HOM05D004013 ORTHO05D004710 1.5e-09 66.2 45 68.9
C04p32840 Brassica napus HOM05D004013 ORTHO05D004710 1.5e-09 66.2 47 66.0
BolC4t24846H Brassica oleracea HOM05D004013 ORTHO05D004710 1.5e-09 66.2 47 66.0
Lj3C865T7 Lonicera japonica HOM05D004013 ORTHO05D004710 1.5e-09 66.2 47 61.7
CAN.G140.48 Capsicum annuum HOM05D004013 ORTHO05D004710 1.9e-09 65.9 52 63.5
Haze_06261 Corylus avellana HOM05D004013 ORTHO05D004710 1.9e-09 65.9 50 60.0
Dinv18636 Davidia involucrata HOM05D004013 ORTHO05D004710 1.9e-09 65.9 50 58.0
ECA233G0032 Erigeron canadensis HOM05D004013 ORTHO05D004710 1.9e-09 65.9 47 59.6
FvH4_2g06800 Fragaria vesca HOM05D004013 ORTHO05D004710 1.9e-09 65.9 45 64.4
HanXRQChr08g0212421 Helianthus annuus HOM05D004013 ORTHO05D004710 1.9e-09 65.9 47 61.7
PGSC0003DMG400032144 Solanum tuberosum HOM05D004013 ORTHO05D004710 1.9e-09 65.9 52 61.5
BcaC07g40400 Brassica carinata HOM05D004013 ORTHO05D004710 2.5e-09 65.5 47 63.8
BolC8t51099H Brassica oleracea HOM05D004013 ORTHO05D004710 2.5e-09 65.5 47 66.0
Cfa000589 Carpinus fangiana HOM05D004013 ORTHO05D004710 2.5e-09 65.5 47 63.8
CiPaw.09G068100 Carya illinoinensis HOM05D004013 ORTHO05D004710 2.5e-09 65.5 50 60.0
Hma1.2p1_0940F.1_g239620 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 2.5e-09 65.5 50 58.0
Thecc.01G234100 Theobroma cacao HOM05D004013 ORTHO05D004710 2.5e-09 65.5 50 58.0
HPP92_020809 Vanilla planifolia HOM05D004013 ORTHO05D004710 2.5e-09 65.5 47 61.7
AL5G42130 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 3.3e-09 65.1 47 63.8
Duzib264G0158 Durio zibethinus HOM05D004013 ORTHO05D004710 3.3e-09 65.1 46 65.2
Nitab4.5_0001568g0070 Nicotiana tabacum HOM05D004013 ORTHO05D004710 3.3e-09 65.1 47 63.8
Peaxi162Scf00441g00621 Petunia axillaris HOM05D004013 ORTHO05D004710 3.3e-09 65.1 47 63.8
SalBow7G0073 Salvia bowleyana HOM05D004013 ORTHO05D004710 3.3e-09 65.1 47 61.7
BcaC02g12335 Brassica carinata HOM05D004013 ORTHO05D004710 4.3e-09 64.7 61 52.5
BcaC07g40539 Brassica carinata HOM05D004013 ORTHO05D004710 4.3e-09 64.7 42 71.4
C04p05030 Brassica napus HOM05D004013 ORTHO05D004710 4.3e-09 64.7 61 52.5
BolC4t22136H Brassica oleracea HOM05D004013 ORTHO05D004710 4.3e-09 64.7 61 52.5
FAN24G3388 Fragaria x ananassa HOM05D004013 ORTHO05D004710 4.3e-09 64.7 45 64.4
HanXRQChr12g0363401 Helianthus annuus HOM05D004013 ORTHO05D004710 4.3e-09 64.7 47 59.6
Manes.01G009000 Manihot esculenta HOM05D004013 ORTHO05D004710 4.3e-09 64.7 47 63.8
PSO675G0050 Papaver somniferum HOM05D004013 ORTHO05D004710 4.3e-09 64.7 47 59.6
Prupe.2G000200 Prunus persica HOM05D004013 ORTHO05D004710 4.3e-09 64.7 47 61.7
CANSAT78G0639 Cannabis sativa HOM05D004013 ORTHO05D004710 5.6e-09 64.3 50 56.0
Oeu011024.1 Olea europaea HOM05D004013 ORTHO05D004710 5.6e-09 64.3 47 61.7
ECA232G0201 Erigeron canadensis HOM05D004013 ORTHO05D004710 7.3e-09 63.9 47 57.4
Lalb_Chr03g0040611 Lupinus albus HOM05D004013 ORTHO05D004710 7.3e-09 63.9 48 58.3
Nitab4.5_0005132g0050 Nicotiana tabacum HOM05D004013 ORTHO05D004710 7.3e-09 63.9 47 61.7
A05p04250 Brassica napus HOM05D004013 ORTHO05D004710 9.6e-09 63.5 61 52.5
Thhalv10005940m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 9.6e-09 63.5 47 63.8
CiPaw.10G057600 Carya illinoinensis HOM05D004013 ORTHO05D004710 1.3e-08 63.2 45 64.4
EL10Ac3g06192 Beta vulgaris HOM05D004013 ORTHO05D004710 1.6e-08 62.8 45 64.4
BraA05t19410Z Brassica rapa HOM05D004013 ORTHO05D004710 1.6e-08 62.8 61 52.5
CDE04G0030 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 1.6e-08 62.8 46 58.7
CDE06G1594 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 1.6e-08 62.8 46 58.7
Migut.L00278 Erythranthe guttata HOM05D004013 ORTHO05D004710 1.6e-08 62.8 47 59.6
Migut.L00578 Erythranthe guttata HOM05D004013 ORTHO05D004710 1.6e-08 62.8 47 59.6
Oeu053147.1 Olea europaea HOM05D004013 ORTHO05D004710 1.6e-08 62.8 47 61.7
Sp4g26220 Schrenkiella parvula HOM05D004013 ORTHO05D004710 1.6e-08 62.8 47 59.6
Solyc01g006230.3 Solanum lycopersicum HOM05D004013 ORTHO05D004710 1.6e-08 62.8 52 59.6
Sopen01g002230 Solanum pennellii HOM05D004013 ORTHO05D004710 1.6e-08 62.8 52 59.6
COL.COLO4_06916 Corchorus olitorius HOM05D004013 ORTHO05D004710 2.1e-08 62.4 50 56.0
Eucgr.K03157 Eucalyptus grandis HOM05D004013 ORTHO05D004710 2.1e-08 62.4 47 57.4
Hma1.2p1_1910F.1_g307280 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 2.1e-08 62.4 45 62.2
MSTRG.23493 Avicennia marina HOM05D004013 ORTHO05D004710 2.8e-08 62.0 47 59.6
Ah.13g073110 Amaranthus hybridus HOM05D004013 ORTHO05D004710 3.6e-08 61.6 42 69.0
Carub.0005s2667 Capsella rubella HOM05D004013 ORTHO05D004710 3.6e-08 61.6 45 64.4
CARHR170260 Cardamine hirsuta HOM05D004013 ORTHO05D004710 3.6e-08 61.6 43 65.1
AUR62002510 Chenopodium quinoa HOM05D004013 ORTHO05D004710 3.6e-08 61.6 45 62.2
AUR62023683 Chenopodium quinoa HOM05D004013 ORTHO05D004710 3.6e-08 61.6 45 62.2
Lj6A740G51 Lonicera japonica HOM05D004013 ORTHO05D004710 3.6e-08 61.6 43 62.8
SGA_v2.0_scaffold3G01797 Striga asiatica HOM05D004013 ORTHO05D004710 3.6e-08 61.6 45 60.0
MD00G1055200 Malus domestica HOM05D004013 ORTHO05D004710 4.8e-08 61.2 47 59.6
Aa31LG1G25800 Aethionema arabicum HOM05D004013 ORTHO05D004710 6.2e-08 60.8 47 59.6
AL4G43020 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 6.2e-08 60.8 45 60.0
BcaB02g08917 Brassica carinata HOM05D004013 ORTHO05D004710 6.2e-08 60.8 45 60.0
CARHR139300 Cardamine hirsuta HOM05D004013 ORTHO05D004710 6.2e-08 60.8 61 50.8
Oeu034368.2 Olea europaea HOM05D004013 ORTHO05D004710 6.2e-08 60.8 45 57.8
Hund22667 Selenicereus undatus HOM05D004013 ORTHO05D004710 6.2e-08 60.8 45 60.0
Oeu037862.1 Olea europaea HOM05D004013 ORTHO05D004710 8.1e-08 60.5 47 57.4
RcHm_v2.0_Chr6g0259021 Rosa chinensis HOM05D004013 ORTHO05D004710 8.1e-08 60.5 45 62.2
Sc08g0007990 Simmondsia chinensis HOM05D004013 ORTHO05D004710 1.1e-07 60.1 45 57.8
Carub.0004s2669 Capsella rubella HOM05D004013 ORTHO05D004710 1.8e-07 59.3 45 57.8
SEGI_37986 Sequoiadendron giganteum HOM05D004013 ORTHO05D004710 1.8e-07 59.3 49 59.2
AT2G44140 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 2.4e-07 58.9 45 60.0
Lsat_1_v5_gn_8_45601 Lactuca sativa HOM05D004013 ORTHO05D004710 2.4e-07 58.9 44 56.8
Pp3c7_280 Physcomitrium patens HOM05D004013 ORTHO05D004710 2.4e-07 58.9 43 60.5
MD07G1000400 Malus domestica HOM05D004013 ORTHO05D004710 3.1e-07 58.5 47 57.4
Pp3c11_22820 Physcomitrium patens HOM05D004013 ORTHO05D004710 4.0e-07 58.2 47 55.3
DCAR_026793 Daucus carota HOM05D004013 ORTHO05D004710 5.3e-07 57.8 52 51.9
PGR142G2472 Punica granatum HOM05D004013 ORTHO05D004710 1.2e-06 56.6 43 55.8
unitig_748.g8760 Utricularia gibba HOM05D004013 ORTHO05D004710 1.2e-06 56.6 47 55.3
Ah.07g203370 Amaranthus hybridus HOM05D004013 ORTHO05D004710 3.4e-06 55.1 42 61.9


User provided reference genes

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