Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0794G107 Amborella trichopoda HOM05D004784 ORTHO05D005762 8.1e-249 863.2 417 100.0
CiPaw.09G093700 Carya illinoinensis HOM05D004784 ORTHO05D005762 2.5e-202 708.8 415 83.1
TAR629G2745 Trochodendron aralioides HOM05D004784 ORTHO05D005762 4.3e-202 708.0 415 83.4
MBI02_g15378_MAGBIO Magnolia biondii HOM05D004784 ORTHO05D005762 5.7e-202 707.6 415 82.9
QL05p072692 Quercus lobata HOM05D004784 ORTHO05D005762 1.6e-201 706.1 416 82.5
CiPaw.10G073000 Carya illinoinensis HOM05D004784 ORTHO05D005762 2.8e-201 705.3 415 83.4
CDE05G1701 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 8.2e-201 703.7 417 82.7
Dinv13913 Davidia involucrata HOM05D004784 ORTHO05D005762 1.4e-200 703.0 415 83.1
TWI38G1114 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 1.4e-200 703.0 415 83.4
Haze_06821 Corylus avellana HOM05D004784 ORTHO05D005762 2.4e-200 702.2 415 82.2
Nitab4.5_0002695g0040 Nicotiana tabacum HOM05D004784 ORTHO05D005762 2.4e-200 702.2 415 82.7
Thecc.06G223500 Theobroma cacao HOM05D004784 ORTHO05D005762 2.4e-200 702.2 417 82.3
Cfa000202 Carpinus fangiana HOM05D004784 ORTHO05D005762 3.1e-200 701.8 415 82.2
MELO3C002444.2 Cucumis melo HOM05D004784 ORTHO05D005762 3.1e-200 701.8 417 82.3
Sed0006727 Sechium edule HOM05D004784 ORTHO05D005762 4.1e-200 701.4 417 82.3
Dinv20065 Davidia involucrata HOM05D004784 ORTHO05D005762 6.9e-200 700.7 415 82.4
Oeu002744.1 Olea europaea HOM05D004784 ORTHO05D005762 6.9e-200 700.7 415 81.9
PGSC0003DMG400016444 Solanum tuberosum HOM05D004784 ORTHO05D005762 6.9e-200 700.7 415 81.7
Cc09_g01490 Coffea canephora HOM05D004784 ORTHO05D005762 9.0e-200 700.3 417 82.5
Sopen02g025500 Solanum pennellii HOM05D004784 ORTHO05D005762 2.0e-199 699.1 415 81.4
ClCG03G004610 Citrullus lanatus HOM05D004784 ORTHO05D005762 2.6e-199 698.7 417 82.3
Duzib192G0808 Durio zibethinus HOM05D004784 ORTHO05D005762 2.6e-199 698.7 417 82.3
TWI63G0560 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 2.6e-199 698.7 415 82.9
CsaV3_1G010620 Cucumis sativus L. HOM05D004784 ORTHO05D005762 3.4e-199 698.4 417 82.0
Hma1.2p1_0298F.1_g117720 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 3.4e-199 698.4 414 82.9
Solyc02g080810.3 Solanum lycopersicum HOM05D004784 ORTHO05D005762 3.4e-199 698.4 415 81.2
Nitab4.5_0007963g0010 Nicotiana tabacum HOM05D004784 ORTHO05D005762 4.5e-199 698.0 415 82.2
Sed0013135 Sechium edule HOM05D004784 ORTHO05D005762 4.5e-199 698.0 417 81.8
Peaxi162Scf00131g01117 Petunia axillaris HOM05D004784 ORTHO05D005762 5.9e-199 697.6 416 81.5
CDE02G4424 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 1.0e-198 696.8 417 82.0
Lj1A1232G87 Lonicera japonica HOM05D004784 ORTHO05D005762 2.2e-198 695.7 413 82.1
COL.COLO4_31797 Corchorus olitorius HOM05D004784 ORTHO05D005762 2.9e-198 695.3 417 81.3
Oeu013835.1 Olea europaea HOM05D004784 ORTHO05D005762 2.9e-198 695.3 415 81.2
CAN.G1014.12 Capsicum annuum HOM05D004784 ORTHO05D005762 3.8e-198 694.9 415 81.7
QL02p099920 Quercus lobata HOM05D004784 ORTHO05D005762 3.8e-198 694.9 417 81.5
Hund21422 Selenicereus undatus HOM05D004784 ORTHO05D005762 3.8e-198 694.9 415 81.4
Ciclev10015433m.g Citrus clementina HOM05D004784 ORTHO05D005762 5.0e-198 694.5 415 81.2
Gohir.D05G174600 Gossypium hirsutum HOM05D004784 ORTHO05D005762 1.1e-197 693.3 417 81.1
Ah.09g234740 Amaranthus hybridus HOM05D004784 ORTHO05D005762 1.4e-197 693.0 415 80.5
Glyma.17G012000 Glycine max HOM05D004784 ORTHO05D005762 2.5e-197 692.2 417 80.8
Manes.17G025900 Manihot esculenta HOM05D004784 ORTHO05D005762 2.5e-197 692.2 417 81.8
arahy.Tifrunner.gnm1.ann1.EH8QHL Arachis hypogaea HOM05D004784 ORTHO05D005762 3.2e-197 691.8 417 81.5
Hma1.2p1_0091F.1_g046500 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 3.2e-197 691.8 415 81.4
Prupe.4G018500 Prunus persica HOM05D004784 ORTHO05D005762 3.2e-197 691.8 418 81.3
Aqoxy1G03119 Aquilegia oxysepala HOM05D004784 ORTHO05D005762 4.2e-197 691.4 415 80.5
Glyma.07G262100 Glycine max HOM05D004784 ORTHO05D005762 4.2e-197 691.4 417 80.1
Rhsim13G0152700 Rhododendron simsii HOM05D004784 ORTHO05D005762 4.2e-197 691.4 415 82.2
Sc24g0000220 Simmondsia chinensis HOM05D004784 ORTHO05D005762 4.2e-197 691.4 416 79.6
Gohir.A06G149200 Gossypium hirsutum HOM05D004784 ORTHO05D005762 7.2e-197 690.6 417 81.5
Glyma.09G004700 Glycine max HOM05D004784 ORTHO05D005762 9.4e-197 690.3 417 80.6
CANSAT56G2555 Cannabis sativa HOM05D004784 ORTHO05D005762 1.2e-196 689.9 417 81.5
MSTRG.7197 Avicennia marina HOM05D004784 ORTHO05D005762 1.6e-196 689.5 415 81.7
VMungo1215G1817 Vigna mungo HOM05D004784 ORTHO05D005762 1.6e-196 689.5 417 81.5
Gohir.D06G155300 Gossypium hirsutum HOM05D004784 ORTHO05D005762 2.1e-196 689.1 417 80.6
Gorai.010G181500 Gossypium raimondii HOM05D004784 ORTHO05D005762 2.1e-196 689.1 417 81.1
Nn1g03473 Nelumbo nucifera HOM05D004784 ORTHO05D005762 2.1e-196 689.1 459 75.4
Ah.14g087950 Amaranthus hybridus HOM05D004784 ORTHO05D005762 2.7e-196 688.7 415 80.7
Gohir.A05G171500 Gossypium hirsutum HOM05D004784 ORTHO05D005762 2.7e-196 688.7 417 80.8
Atru.chr10.2254 Acer truncatum HOM05D004784 ORTHO05D005762 7.9e-196 687.2 415 80.7
Sabra11G0005900 Salix brachista HOM05D004784 ORTHO05D005762 1.8e-195 686.0 415 80.7
FvH4_3g01820 Fragaria vesca HOM05D004784 ORTHO05D005762 2.3e-195 685.6 415 80.7
Lalb_Chr18g0056491 Lupinus albus HOM05D004784 ORTHO05D005762 3.0e-195 685.3 415 80.5
Phvul.003G080400 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 3.0e-195 685.3 417 80.1
FAN25G0478 Fragaria x ananassa HOM05D004784 ORTHO05D005762 3.9e-195 684.9 415 80.7
Lj6g0010262 Lotus japonicus HOM05D004784 ORTHO05D005762 3.9e-195 684.9 417 80.1
Potri.004G009600 Populus trichocarpa HOM05D004784 ORTHO05D005762 3.9e-195 684.9 415 80.2
PGR142G1596 Punica granatum HOM05D004784 ORTHO05D005762 5.1e-195 684.5 415 80.2
Ca_21072_v3 Cicer arietinum L. HOM05D004784 ORTHO05D005762 6.7e-195 684.1 417 79.4
Medtr4g132360 Medicago truncatula HOM05D004784 ORTHO05D005762 6.7e-195 684.1 417 79.4
unitig_92.g28113 Utricularia gibba HOM05D004784 ORTHO05D005762 6.7e-195 684.1 417 80.6
Eucgr.L02773 Eucalyptus grandis HOM05D004784 ORTHO05D005762 8.8e-195 683.7 415 80.5
Glyma.15G109300 Glycine max HOM05D004784 ORTHO05D005762 8.8e-195 683.7 417 79.6
PSO541G3045 Papaver somniferum HOM05D004784 ORTHO05D005762 8.8e-195 683.7 415 79.3
Psat4g005920 Pisum sativum HOM05D004784 ORTHO05D005762 8.8e-195 683.7 417 78.9
RcHm_v2.0_Chr5g0002651 Rosa chinensis HOM05D004784 ORTHO05D005762 8.8e-195 683.7 415 80.5
PSO675G1799 Papaver somniferum HOM05D004784 ORTHO05D005762 1.1e-194 683.3 415 79.3
MD10G1323700 Malus domestica HOM05D004784 ORTHO05D005762 1.5e-194 682.9 418 80.6
SGA_v2.0_scaffold7G03812 Striga asiatica HOM05D004784 ORTHO05D005762 1.5e-194 682.9 441 76.9
AUR62022970 Chenopodium quinoa HOM05D004784 ORTHO05D005762 2.5e-194 682.2 417 78.7
AUR62012328 Chenopodium quinoa HOM05D004784 ORTHO05D005762 3.3e-194 681.8 417 78.7
SalBow8G0639 Salvia bowleyana HOM05D004784 ORTHO05D005762 3.3e-194 681.8 415 80.2
Hund23455 Selenicereus undatus HOM05D004784 ORTHO05D005762 3.3e-194 681.8 415 79.3
TPR.G37066 Trifolium pratense HOM05D004784 ORTHO05D005762 5.7e-194 681.0 417 78.9
Phvul.006G148700 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 7.4e-194 680.6 417 79.1
MSTRG.14637 Avicennia marina HOM05D004784 ORTHO05D005762 9.7e-194 680.2 418 79.9
Potri.011G006800 Populus trichocarpa HOM05D004784 ORTHO05D005762 9.7e-194 680.2 415 80.0
THA.LOC104809494 Tarenaya hassleriana HOM05D004784 ORTHO05D005762 1.3e-193 679.9 415 78.6
FAN21G1227 Fragaria x ananassa HOM05D004784 ORTHO05D005762 1.7e-193 679.5 415 80.2
HPP92_004130 Vanilla planifolia HOM05D004784 ORTHO05D005762 1.7e-193 679.5 419 79.7
Migut.M01336 Erythranthe guttata HOM05D004784 ORTHO05D005762 6.3e-193 677.6 413 79.2
Lalb_Chr15g0087671 Lupinus albus HOM05D004784 ORTHO05D005762 1.1e-192 676.8 419 78.8
Aa31LG1G2870 Aethionema arabicum HOM05D004784 ORTHO05D005762 3.1e-192 675.2 415 78.3
AT1G11860 Arabidopsis thaliana HOM05D004784 ORTHO05D005762 4.1e-192 674.9 415 77.8
Thhalv10007781m.g Eutrema salsugineum HOM05D004784 ORTHO05D005762 1.2e-191 673.3 415 78.1
Sp1g10470 Schrenkiella parvula HOM05D004784 ORTHO05D005762 2.0e-191 672.5 415 77.8
A09p64310 Brassica napus HOM05D004784 ORTHO05D005762 4.5e-191 671.4 415 78.3
C08p14960 Brassica napus HOM05D004784 ORTHO05D005762 4.5e-191 671.4 415 78.1
BolC8t49127H Brassica oleracea HOM05D004784 ORTHO05D005762 4.5e-191 671.4 415 78.1
BraA09t41774Z Brassica rapa HOM05D004784 ORTHO05D005762 4.5e-191 671.4 415 78.3
AL1G23030 Arabidopsis lyrata HOM05D004784 ORTHO05D005762 5.9e-191 671.0 415 77.6
C08p47920 Brassica napus HOM05D004784 ORTHO05D005762 5.9e-191 671.0 415 78.1
CARHR012170 Cardamine hirsuta HOM05D004784 ORTHO05D005762 7.7e-191 670.6 415 77.3
RhsimUnG0232700 Rhododendron simsii HOM05D004784 ORTHO05D005762 7.7e-191 670.6 458 74.5
Sc05g0009310 Simmondsia chinensis HOM05D004784 ORTHO05D005762 1.0e-190 670.2 416 77.9
BraA08t35239Z Brassica rapa HOM05D004784 ORTHO05D005762 1.3e-190 669.8 415 78.1
Carub.0001s1151 Capsella rubella HOM05D004784 ORTHO05D005762 1.7e-190 669.5 415 77.3
vmacro03682 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 1.7e-190 669.5 431 77.5
DCAR_008168 Daucus carota HOM05D004784 ORTHO05D005762 2.9e-190 668.7 430 77.7
arahy.Tifrunner.gnm1.ann1.PLZ2LX Arachis hypogaea HOM05D004784 ORTHO05D005762 3.8e-190 668.3 407 80.8
BolC8t52329H Brassica oleracea HOM05D004784 ORTHO05D005762 8.5e-190 667.2 415 77.6
EL10Ac6g15683 Beta vulgaris HOM05D004784 ORTHO05D005762 1.0e-187 660.2 458 71.6
Nn030s41595 Nelumbo nucifera HOM05D004784 ORTHO05D005762 3.0e-187 658.7 388 82.7
SEGI_27497 Sequoiadendron giganteum HOM05D004784 ORTHO05D005762 4.4e-186 654.8 415 75.7
GSVIVG01012702001 Vitis vinifera HOM05D004784 ORTHO05D005762 2.2e-185 652.5 359 86.9
vmacro22539 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 1.1e-184 650.2 482 69.3
Oeu040336.3 Olea europaea HOM05D004784 ORTHO05D005762 1.6e-183 646.4 526 64.3
Sabra04G0005000 Salix brachista HOM05D004784 ORTHO05D005762 2.0e-183 646.0 391 80.3
Gorai.009G179900 Gossypium raimondii HOM05D004784 ORTHO05D005762 2.6e-183 645.6 394 79.7
Zm00001eb070250 Zea mays HOM05D004784 ORTHO05D005762 5.9e-183 644.4 376 81.4
Os04g0623800 Oryza sativa ssp. japonica HOM05D004784 ORTHO05D005762 5.0e-182 641.3 376 80.9
Lsat_1_v5_gn_7_16480 Lactuca sativa HOM05D004784 ORTHO05D005762 9.4e-181 637.1 396 78.3
HanXRQChr15g0470421 Helianthus annuus HOM05D004784 ORTHO05D005762 2.7e-180 635.6 357 84.9
A08p33210 Brassica napus HOM05D004784 ORTHO05D005762 1.1e-178 630.2 415 74.7
BcaB03g13227 Brassica carinata HOM05D004784 ORTHO05D005762 9.7e-178 627.1 359 83.0
Pp3c12_9500 Physcomitrium patens HOM05D004784 ORTHO05D005762 2.8e-169 599.0 415 68.4
AagrBONN_evm.TU.Sc2ySwM_344.1952 Anthoceros agrestis HOM05D004784 ORTHO05D005762 2.4e-168 595.9 408 72.1
Pp3c4_15010 Physcomitrium patens HOM05D004784 ORTHO05D005762 2.7e-167 592.4 416 68.3
Mapoly0129s0024 Marchantia polymorpha HOM05D004784 ORTHO05D005762 1.3e-166 590.1 391 70.3
ECA236G1893 Erigeron canadensis HOM05D004784 ORTHO05D005762 8.0e-164 580.9 417 70.5
SMO352G0047 Selaginella moellendorffii HOM05D004784 ORTHO05D005762 3.5e-159 565.5 407 66.1
TAR627G1106 Trochodendron aralioides HOM05D004784 ORTHO05D005762 1.5e-154 550.1 325 81.8
CSS0014504 Camellia sinensis var. sinensis HOM05D004784 ORTHO05D005762 1.9e-144 516.5 398 67.1
TAR626G0807 Trochodendron aralioides HOM05D004784 ORTHO05D005762 6.0e-143 511.5 315 79.0
Cre03.g193750 Chlamydomonas reinhardtii HOM05D004784 ORTHO05D005762 1.3e-142 510.4 399 63.7
A06p08340 Brassica napus HOM05D004784 ORTHO05D005762 4.3e-141 505.4 415 62.9
Actinidia26902 Actinidia chinensis HOM05D004784 ORTHO05D005762 9.2e-136 487.6 330 74.8
PRCOL_00007041 Prasinoderma coloniale HOM05D004784 ORTHO05D005762 7.3e-125 451.4 369 61.2
Eucgr.E03909 Eucalyptus grandis HOM05D004784 ORTHO05D005762 8.9e-123 444.5 245 86.5
MCO15G045 Micromonas commoda HOM05D004784 ORTHO05D005762 1.6e-116 423.7 389 54.5
Atru.chr8.533 Acer truncatum HOM05D004784 ORTHO05D005762 2.0e-114 416.8 263 77.6
MD05G1348800 Malus domestica HOM05D004784 ORTHO05D005762 4.3e-101 372.5 246 74.8
Lalb_Chr20g0118761 Lupinus albus HOM05D004784 ORTHO05D005762 9.6e-101 371.3 235 76.6
BraA06t24032Z Brassica rapa HOM05D000911 ORTHO05D001266 2.1e-92 343.6 244 67.6
Cpa.g.sc152.29 Carica papaya HOM05D004784 ORTHO05D005762 1.8e-91 340.5 198 84.3
Cfa026602 Carpinus fangiana HOM05D004784 ORTHO05D005762 8.5e-81 305.1 390 44.9
CBR_g24348 Chara braunii HOM05D004784 ORTHO05D005762 9.4e-72 275.0 183 73.8
Haze_26660 Corylus avellana HOM05D004784 ORTHO05D005762 1.2e-71 274.6 384 42.2
Sopen07g011340 Solanum pennellii HOM05D004784 ORTHO05D005762 3.0e-62 243.4 181 65.7
EL10Ac1g01135 Beta vulgaris HOM05D004784 ORTHO05D005762 9.4e-56 221.9 142 73.9
EL10Ac2g03767 Beta vulgaris HOM05D004784 ORTHO05D005762 1.6e-55 221.1 141 74.5
Atru.chr8.531 Acer truncatum HOM05D004784 ORTHO05D005762 5.7e-53 212.6 131 77.1
Actinidia05506 Actinidia chinensis HOM05D004784 ORTHO05D005762 3.2e-48 196.8 104 90.4
Actinidia11861 Actinidia chinensis HOM05D004784 ORTHO05D005762 1.7e-20 104.8 75 65.3
Actinidia15969 Actinidia chinensis HOM05D004784 ORTHO05D058202 9.5e-16 89.0 64 62.5
Lsat_1_v5_gn_9_118621 Lactuca sativa HOM05D006894 ORTHO05D008724 2.4e-11 74.3 333 23.1
PGR042G0448 Punica granatum HOM05D006894 ORTHO05D008724 2.3e-09 67.8 326 23.0


User provided reference genes

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