Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0794G016 Amborella trichopoda HOM05D006187 ORTHO05D007621 4.2e-124 448.0 215 100.0
RcHm_v2.0_Chr5g0039431 Rosa chinensis HOM05D006187 ORTHO05D007621 4.5e-102 374.8 208 84.6
FvH4_3g22670 Fragaria vesca HOM05D006187 ORTHO05D007621 1.0e-101 373.6 208 84.6
CSS0049447 Camellia sinensis var. sinensis HOM05D006187 ORTHO05D007621 1.9e-100 369.4 208 83.2
DCAR_022562 Daucus carota HOM05D006187 ORTHO05D007621 3.2e-100 368.6 209 82.3
Dinv22262 Davidia involucrata HOM05D006187 ORTHO05D007621 3.2e-100 368.6 209 83.7
Haze_09689 Corylus avellana HOM05D006187 ORTHO05D007621 7.2e-100 367.5 209 83.7
Cc05_g13690 Coffea canephora HOM05D006187 ORTHO05D007621 9.4e-100 367.1 209 83.7
RhsimUnG0250600 Rhododendron simsii HOM05D006187 ORTHO05D007621 1.2e-99 366.7 209 83.3
COL.COLO4_09662 Corchorus olitorius HOM05D006187 ORTHO05D007621 6.1e-99 364.4 209 82.8
Oeu005532.1 Olea europaea HOM05D006187 ORTHO05D007621 7.9e-99 364.0 209 81.8
Gohir.D01G066500 Gossypium hirsutum HOM05D006187 ORTHO05D007621 1.0e-98 363.6 209 82.8
FAN16G3112 Fragaria x ananassa HOM05D006187 ORTHO05D007621 1.4e-98 363.2 220 80.0
Sed0017183 Sechium edule HOM05D006187 ORTHO05D007621 1.4e-98 363.2 209 81.3
Cfa020345 Carpinus fangiana HOM05D006187 ORTHO05D007621 1.8e-98 362.8 209 82.3
Prupe.4G212700 Prunus persica HOM05D006187 ORTHO05D007621 1.8e-98 362.8 208 81.2
CAN.G337.132 Capsicum annuum HOM05D006187 ORTHO05D007621 3.0e-98 362.1 209 81.3
CsaV3_7G021800 Cucumis sativus L. HOM05D006187 ORTHO05D007621 3.9e-98 361.7 209 81.3
ECA246G0646 Erigeron canadensis HOM05D006187 ORTHO05D007621 3.9e-98 361.7 209 81.3
MD11G1218600 Malus domestica HOM05D006187 ORTHO05D007621 6.7e-98 360.9 208 81.2
Thecc.07G036900 Theobroma cacao HOM05D006187 ORTHO05D007621 8.8e-98 360.5 209 81.8
Nn1g03532 Nelumbo nucifera HOM05D006187 ORTHO05D007621 2.5e-97 359.0 209 80.9
Dinv40753 Davidia involucrata HOM05D006187 ORTHO05D007621 3.3e-97 358.6 208 80.3
Gohir.A01G079500 Gossypium hirsutum HOM05D006187 ORTHO05D007621 3.3e-97 358.6 209 81.8
Peaxi162Scf00964g00021 Petunia axillaris HOM05D006187 ORTHO05D007621 4.3e-97 358.2 209 80.4
CiPaw.11G189300 Carya illinoinensis HOM05D006187 ORTHO05D007621 5.7e-97 357.8 208 81.7
Psat2g010920 Pisum sativum HOM05D006187 ORTHO05D007621 7.4e-97 357.5 209 80.9
THA.LOC104816937 Tarenaya hassleriana HOM05D006187 ORTHO05D007621 7.4e-97 357.5 209 81.3
FAN11G0395 Fragaria x ananassa HOM05D006187 ORTHO05D007621 9.7e-97 357.1 229 76.9
Gorai.002G088500 Gossypium raimondii HOM05D006187 ORTHO05D007621 9.7e-97 357.1 209 81.3
Potri.001G435500 Populus trichocarpa HOM05D006187 ORTHO05D007621 9.7e-97 357.1 209 80.4
Sopen07g032780 Solanum pennellii HOM05D006187 ORTHO05D007621 9.7e-97 357.1 209 80.4
VMungo0647G0583 Vigna mungo HOM05D006187 ORTHO05D007621 1.3e-96 356.7 209 81.3
Solyc07g064590.3 Solanum lycopersicum HOM05D006187 ORTHO05D007621 1.7e-96 356.3 209 80.4
PGSC0003DMG400022319 Solanum tuberosum HOM05D006187 ORTHO05D007621 1.7e-96 356.3 209 80.4
Duzib170G0579 Durio zibethinus HOM05D006187 ORTHO05D007621 2.2e-96 355.9 209 81.3
FAN25G1478 Fragaria x ananassa HOM05D006187 ORTHO05D007621 2.8e-96 355.5 229 76.9
Manes.15G071900 Manihot esculenta HOM05D006187 ORTHO05D007621 3.7e-96 355.1 209 80.4
Phvul.008G266900 Phaseolus vulgaris HOM05D006187 ORTHO05D007621 4.8e-96 354.8 209 80.4
PGR083G2749 Punica granatum HOM05D006187 ORTHO05D007621 4.8e-96 354.8 209 81.3
HPP92_016292 Vanilla planifolia HOM05D006187 ORTHO05D007621 6.3e-96 354.4 210 78.6
Aqoxy1G03401 Aquilegia oxysepala HOM05D006187 ORTHO05D007621 8.2e-96 354.0 209 78.5
Lalb_Chr10g0106971 Lupinus albus HOM05D006187 ORTHO05D007621 1.4e-95 353.2 209 79.4
TAR626G1058 Trochodendron aralioides HOM05D006187 ORTHO05D007621 1.8e-95 352.8 209 79.9
FAN21G2137 Fragaria x ananassa HOM05D006187 ORTHO05D007621 2.4e-95 352.4 239 73.6
C06p05930 Brassica napus HOM05D006187 ORTHO05D007621 3.1e-95 352.1 209 79.9
Ciclev10009486m.g Citrus clementina HOM05D006187 ORTHO05D007621 4.1e-95 351.7 209 79.4
BcaB07g33507 Brassica carinata HOM05D006187 ORTHO05D007621 6.9e-95 350.9 209 79.9
TWI39G1048 Tripterygium wilfordii HOM05D006187 ORTHO05D007621 6.9e-95 350.9 209 77.5
A06p02950 Brassica napus HOM05D006187 ORTHO05D007621 1.2e-94 350.1 209 79.9
Sp1g37520 Schrenkiella parvula HOM05D006187 ORTHO05D007621 1.5e-94 349.7 209 79.4
arahy.Tifrunner.gnm1.ann1.KHU2SV Arachis hypogaea HOM05D006187 ORTHO05D007621 4.5e-94 348.2 209 78.9
arahy.Tifrunner.gnm1.ann1.YIAG1Z Arachis hypogaea HOM05D006187 ORTHO05D007621 4.5e-94 348.2 209 78.9
MSTRG.26280 Avicennia marina HOM05D006187 ORTHO05D007621 4.5e-94 348.2 209 78.0
BcaC08g43245 Brassica carinata HOM05D006187 ORTHO05D007621 4.5e-94 348.2 209 79.4
CiPaw.12G129700 Carya illinoinensis HOM05D006187 ORTHO05D007621 4.5e-94 348.2 208 78.8
BraA06t23501Z Brassica rapa HOM05D006187 ORTHO05D007621 5.9e-94 347.8 210 80.0
Thhalv10011780m.g Eutrema salsugineum HOM05D006187 ORTHO05D007621 5.9e-94 347.8 209 79.4
TPR.G1184 Trifolium pratense HOM05D006187 ORTHO05D007621 5.9e-94 347.8 209 78.9
unitig_746.g26546 Utricularia gibba HOM05D006187 ORTHO05D007621 5.9e-94 347.8 209 78.5
CSS0042680 Camellia sinensis var. sinensis HOM05D006187 ORTHO05D007621 7.7e-94 347.4 209 78.5
LjContig00272g0005891 Lotus japonicus HOM05D006187 ORTHO05D007621 1.0e-93 347.1 209 78.0
PSO210G0259 Papaver somniferum HOM05D006187 ORTHO05D007621 1.7e-93 346.3 209 76.6
PSO832G1277 Papaver somniferum HOM05D006187 ORTHO05D007621 1.7e-93 346.3 209 76.6
Zm00001eb207490 Zea mays HOM05D006187 ORTHO05D007621 1.7e-93 346.3 209 78.5
AL1G58340 Arabidopsis lyrata HOM05D006187 ORTHO05D007621 2.9e-93 345.5 209 78.5
Eucgr.F00764 Eucalyptus grandis HOM05D006187 ORTHO05D007621 2.9e-93 345.5 209 78.0
Potri.011G139500 Populus trichocarpa HOM05D006187 ORTHO05D007621 2.9e-93 345.5 209 78.5
Aa31LG10G3660 Aethionema arabicum HOM05D006187 ORTHO05D007621 6.5e-93 344.4 209 78.9
CARHR040720 Cardamine hirsuta HOM05D006187 ORTHO05D007621 6.5e-93 344.4 209 78.5
Ca_06320_v3 Cicer arietinum L. HOM05D006187 ORTHO05D007621 2.5e-92 342.4 209 78.9
Ca_30809_v3 Cicer arietinum L. HOM05D006187 ORTHO05D007621 2.5e-92 342.4 209 78.9
EL10Ac4g07806 Beta vulgaris HOM05D006187 ORTHO05D007621 4.2e-92 341.7 208 75.0
SalBow5G2755 Salvia bowleyana HOM05D006187 ORTHO05D007621 4.2e-92 341.7 225 73.8
Carub.0001s3971 Capsella rubella HOM05D006187 ORTHO05D007621 5.5e-92 341.3 209 78.0
AT1G50670 Arabidopsis thaliana HOM05D006187 ORTHO05D007621 7.2e-92 340.9 209 77.0
Migut.K00331 Erythranthe guttata HOM05D006187 ORTHO05D007621 7.2e-92 340.9 208 77.4
GSVIVG01037647001 Vitis vinifera HOM05D006187 ORTHO05D007621 1.2e-91 340.1 209 76.1
CANSAT11G0252 Cannabis sativa HOM05D006187 ORTHO05D007621 1.6e-91 339.7 209 76.6
AUR62020447 Chenopodium quinoa HOM05D006187 ORTHO05D007621 1.6e-91 339.7 209 77.0
CDE05G0514 Ceratophyllum demersum HOM05D006187 ORTHO05D007621 6.1e-91 337.8 208 76.0
Ah.06g186030 Amaranthus hybridus HOM05D006187 ORTHO05D007621 1.4e-90 336.7 209 74.2
SGA_v2.0_scaffold347G49550 Striga asiatica HOM05D006187 ORTHO05D007621 6.7e-90 334.3 206 75.2
AUR62015764 Chenopodium quinoa HOM05D006187 ORTHO05D007621 1.5e-89 333.2 209 75.1
Oeu062696.2 Olea europaea HOM05D006187 ORTHO05D007621 1.5e-89 333.2 243 67.5
SEGI_20110 Sequoiadendron giganteum HOM05D006187 ORTHO05D007621 2.6e-89 332.4 206 75.7
MELO3C013167.2 Cucumis melo HOM05D006187 ORTHO05D007621 6.3e-88 327.8 189 80.4
Actinidia35344 Actinidia chinensis HOM05D006187 ORTHO05D007621 8.2e-88 327.4 213 73.2
HanXRQChr08g0233871 Helianthus annuus HOM05D006187 ORTHO05D007621 1.4e-87 326.6 187 82.9
Sc16g0006050 Simmondsia chinensis HOM05D006187 ORTHO05D007621 5.3e-87 324.7 209 74.2
Lalb_Chr17g0348481 Lupinus albus HOM05D006187 ORTHO05D007621 9.1e-87 323.9 190 81.1
ClCG09G010800 Citrullus lanatus HOM05D006187 ORTHO05D007621 1.2e-86 323.6 196 77.6
Lsat_1_v5_gn_5_3960 Lactuca sativa HOM05D006187 ORTHO05D007621 2.6e-86 322.4 191 81.2
HanXRQChr05g0159371 Helianthus annuus HOM05D006187 ORTHO05D007621 4.5e-86 321.6 187 81.8
Mapoly0105s0022 Marchantia polymorpha HOM05D006187 ORTHO05D007621 7.7e-86 320.9 209 71.3
Pp3c26_11120 Physcomitrium patens HOM05D006187 ORTHO05D007621 1.9e-84 316.2 206 71.8
Glyma.02G291000 Glycine max HOM05D006187 ORTHO05D007621 4.2e-84 315.1 193 78.2
TWI38G1854 Tripterygium wilfordii HOM05D006187 ORTHO05D007621 4.2e-84 315.1 187 78.6
Glyma.14G023700 Glycine max HOM05D006187 ORTHO05D007621 1.6e-83 313.2 185 80.5
Medtr5g092720 Medicago truncatula HOM05D006187 ORTHO05D007621 2.1e-83 312.8 190 78.4
SMO201G0052 Selaginella moellendorffii HOM05D006187 ORTHO05D007621 3.0e-82 308.9 208 68.3
Sabra11G0125500 Salix brachista HOM05D006187 ORTHO05D007621 5.2e-82 308.1 288 56.6
AagrBONN_evm.TU.Sc2ySwM_344.4367 Anthoceros agrestis HOM05D004720 ORTHO05D007621 6.3e-80 301.2 205 67.8
Nitab4.5_0011129g0020 Nicotiana tabacum HOM05D006187 ORTHO05D007621 5.0e-77 291.6 208 69.2
QL08p010320 Quercus lobata HOM05D006187 ORTHO05D007621 6.1e-75 284.6 196 69.4
vmacro09715 Vaccinium macrocarpon HOM05D006187 ORTHO05D007621 4.4e-73 278.5 172 77.9
BolC6t35706H Brassica oleracea HOM05D006187 ORTHO05D007621 1.0e-69 267.3 165 77.6
Lj1A872G52 Lonicera japonica HOM05D006187 ORTHO05D007621 1.0e-69 267.3 144 86.8
MCO07G461 Micromonas commoda HOM05D006187 ORTHO05D007621 2.3e-66 256.1 210 60.0
Cre09.g409050 Chlamydomonas reinhardtii HOM05D006187 ORTHO05D007621 1.2e-65 253.8 202 59.4
SHI26611 Sapria himalayana HOM05D006187 ORTHO05D007621 2.6e-65 252.7 178 66.3
Hma1.2p1_0673F.1_g201350 Hydrangea macrophylla HOM05D006187 ORTHO05D007621 6.6e-61 238.0 209 59.3
CBR_g54108 Chara braunii HOM05D006187 ORTHO05D007621 3.6e-59 232.3 167 67.1
PSO675G5262 Papaver somniferum HOM05D006187 ORTHO05D007621 3.4e-57 225.7 210 52.4
PRCOL_00006206 Prasinoderma coloniale HOM05D006187 ORTHO05D007621 2.7e-54 216.1 207 53.1
HPP92_016312 Vanilla planifolia HOM05D006187 ORTHO05D007621 3.5e-54 215.7 135 75.6
Cpa.g.sc97.3 Carica papaya HOM05D006187 ORTHO05D007621 4.3e-44 182.2 151 62.3
PSO541G4439 Papaver somniferum HOM05D006187 ORTHO05D007621 1.4e-42 177.2 206 44.7
Haze_26155 Corylus avellana HOM05D006187 ORTHO05D007621 1.2e-41 174.1 206 41.3
MBI18_g14476_MAGBIO Magnolia biondii HOM05D006187 ORTHO05D007621 4.7e-35 152.1 150 57.3
Cre06.g274700 Chlamydomonas reinhardtii HOM05D006187 ORTHO05D007621 6.2e-35 151.8 170 42.9
Prupe.4G233700 Prunus persica HOM05D006187 ORTHO05D007621 4.0e-34 149.1 127 59.1
Cfa025770 Carpinus fangiana HOM05D006187 ORTHO05D007621 7.6e-33 144.8 226 37.2
HPP92_016311 Vanilla planifolia HOM05D006187 ORTHO05D007621 4.3e-28 129.0 76 76.3
Nitab4.5_0001913g0160 Nicotiana tabacum HOM05D006187 ORTHO05D007621 5.6e-28 128.6 84 70.2
Os02g0164800 Oryza sativa ssp. japonica HOM05D006187 ORTHO05D007621 1.8e-26 123.6 84 70.2
PSO675G9324 Papaver somniferum HOM05D006187 ORTHO05D007621 5.2e-26 122.1 135 45.2
AUR62015776 Chenopodium quinoa HOM05D006187 ORTHO05D007621 2.4e-18 96.7 76 63.2
QL08p010315 Quercus lobata HOM05D006187 ORTHO05D007621 1.1e-15 87.8 57 68.4


User provided reference genes

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