Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0789G169 Amborella trichopoda HOM05D000001 ORTHO05D062513 2.9e-75 285.0 132 100.0
TAR371G0087 Trochodendron aralioides HOM05D000001 ORTHO05D030056 1.5e-07 60.1 57 40.4
HPP92_011060 Vanilla planifolia HOM05D000001 ORTHO05D000003 1.5e-07 60.1 56 42.9
MD09G1078400 Malus domestica HOM05D000001 ORTHO05D011591 2.0e-07 59.7 62 37.1
Nn3g18600 Nelumbo nucifera HOM05D000001 ORTHO05D000003 2.0e-07 59.7 63 41.3
Phvul.002G041500 Phaseolus vulgaris HOM05D000001 ORTHO05D010470 2.0e-07 59.7 60 41.7
Prupe.3G245900 Prunus persica HOM05D000001 ORTHO05D000003 2.0e-07 59.7 62 37.1
Sc03g0004390 Simmondsia chinensis HOM05D000001 ORTHO05D000003 2.0e-07 59.7 57 40.4
TAR371G0630 Trochodendron aralioides HOM05D000001 ORTHO05D000003 2.0e-07 59.7 57 42.1
MBI02_g18926_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 2.6e-07 59.3 58 36.2
Dinv09213 Davidia involucrata HOM05D000001 ORTHO05D010470 3.3e-07 58.9 60 40.0
Dinv17645 Davidia involucrata HOM05D000001 ORTHO05D000003 3.3e-07 58.9 59 40.7
Glyma.16G211900 Glycine max HOM05D000001 ORTHO05D010923 3.3e-07 58.9 97 27.8
Nn2g15857 Nelumbo nucifera HOM05D000001 ORTHO05D000003 3.3e-07 58.9 57 38.6
Os12g0256900 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D006265 3.3e-07 58.9 57 36.8
PSO541G4059 Papaver somniferum HOM05D000001 ORTHO05D000003 3.3e-07 58.9 59 37.3
Sopen01g041280 Solanum pennellii HOM05D000001 ORTHO05D000003 3.3e-07 58.9 62 37.1
CiPaw.03G243400 Carya illinoinensis HOM05D000001 ORTHO05D009097 4.4e-07 58.5 63 36.5
RcHm_v2.0_Chr2g0164221 Rosa chinensis HOM05D000001 ORTHO05D000003 4.4e-07 58.5 62 35.5
SEGI_31694 Sequoiadendron giganteum HOM05D000001 ORTHO05D000003 4.4e-07 58.5 57 40.4
PSO063G7653 Papaver somniferum HOM05D000001 ORTHO05D010470 5.7e-07 58.2 64 39.1
Prupe.3G143100 Prunus persica HOM05D000001 ORTHO05D000003 5.7e-07 58.2 57 40.4
ECA233G5333 Erigeron canadensis HOM05D000001 ORTHO05D000003 7.5e-07 57.8 58 36.2
Hma1.2p1_0538F.1_g174430 Hydrangea macrophylla HOM05D000001 ORTHO05D000003 7.5e-07 57.8 61 37.7
Peaxi162Scf00282g00132 Petunia axillaris HOM05D000001 ORTHO05D000003 7.5e-07 57.8 61 37.7
ATR0564G269 Amborella trichopoda HOM05D000001 ORTHO05D000003 9.7e-07 57.4 58 36.2
CAN.G134.126 Capsicum annuum HOM05D000001 ORTHO05D000003 9.7e-07 57.4 62 37.1
Eucgr.C01163 Eucalyptus grandis HOM05D000001 ORTHO05D009097 9.7e-07 57.4 63 33.3
Lj6C58T5 Lonicera japonica HOM05D000001 ORTHO05D000003 9.7e-07 57.4 57 38.6
Solyc01g097670.4 Solanum lycopersicum HOM05D000001 ORTHO05D000003 9.7e-07 57.4 62 37.1
TAR493G0001 Trochodendron aralioides HOM05D000001 ORTHO05D006265 9.7e-07 57.4 56 35.7
Zm00001eb243850 Zea mays HOM05D000001 ORTHO05D000003 9.7e-07 57.4 58 37.9
Nitab4.5_0005729g0100 Nicotiana tabacum HOM05D000001 ORTHO05D006702 1.3e-06 57.0 62 37.1
Phvul.011G000700 Phaseolus vulgaris HOM05D000001 ORTHO05D000003 1.3e-06 57.0 57 36.8
SalBow4G1184 Salvia bowleyana HOM05D000001 ORTHO05D000003 1.3e-06 57.0 61 37.7
SalBow4G1264 Salvia bowleyana HOM05D000001 ORTHO05D000003 1.3e-06 57.0 61 37.7
SEGI_30680 Sequoiadendron giganteum HOM05D000001 ORTHO05D000003 1.3e-06 57.0 58 34.5
TAR381G0345 Trochodendron aralioides HOM05D000001 ORTHO05D009545 1.3e-06 57.0 57 35.1
GSVIVG01036511001 Vitis vinifera HOM05D000001 ORTHO05D000003 1.3e-06 57.0 57 40.4
AL3G20100 Arabidopsis lyrata HOM05D000001 ORTHO05D000003 1.7e-06 56.6 85 30.6
CSS0003335 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 1.7e-06 56.6 62 40.3
CANSAT64G0996 Cannabis sativa HOM05D000001 ORTHO05D000003 1.7e-06 56.6 57 38.6
MD17G1068000 Malus domestica HOM05D000001 ORTHO05D000003 1.7e-06 56.6 57 38.6
SEGI_15757 Sequoiadendron giganteum HOM05D000001 ORTHO05D015419 1.7e-06 56.6 57 36.8
Thecc.05G199800 Theobroma cacao HOM05D000001 ORTHO05D010091 1.7e-06 56.6 57 38.6
Cpa.g.sc180.23 Carica papaya HOM05D000001 ORTHO05D011055 2.2e-06 56.2 62 37.1
CiPaw.14G011400 Carya illinoinensis HOM05D000001 ORTHO05D000003 2.2e-06 56.2 59 37.3
Eucgr.A00839 Eucalyptus grandis HOM05D000001 ORTHO05D000003 2.2e-06 56.2 57 38.6
Glyma.01G234100 Glycine max HOM05D000001 ORTHO05D010470 2.2e-06 56.2 63 38.1
Glyma.03G264700 Glycine max HOM05D000001 ORTHO05D000003 2.2e-06 56.2 62 33.9
Manes.14G156200 Manihot esculenta HOM05D000001 ORTHO05D010426 2.2e-06 56.2 58 36.2
PSO339G0075 Papaver somniferum HOM05D000001 ORTHO05D000003 2.2e-06 56.2 57 43.9
Phvul.004G137700 Phaseolus vulgaris HOM05D000001 ORTHO05D010923 2.2e-06 56.2 58 37.9
SEGI_14442 Sequoiadendron giganteum HOM05D000001 ORTHO05D019687 2.2e-06 56.2 57 36.8
THA.LOC104815050 Tarenaya hassleriana HOM05D000001 ORTHO05D010146 2.2e-06 56.2 57 40.4
GSVIVG01026141001 Vitis vinifera HOM05D000001 ORTHO05D000003 2.2e-06 56.2 62 37.1
AagrBONN_evm.TU.Sc2ySwM_344.5235 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.8e-06 55.8 55 43.6
CSS0001629 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 2.8e-06 55.8 57 36.8
CSS0020701 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 2.8e-06 55.8 57 36.8
SMO202G0085 Selaginella moellendorffii HOM05D000001 ORTHO05D376324 2.8e-06 55.8 62 35.5
VMungo0464G0252 Vigna mungo HOM05D000001 ORTHO05D010923 2.8e-06 55.8 58 36.2
AagrBONN_evm.TU.Sc2ySwM_117.3391 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.7e-06 55.5 60 43.3
CSS0031260 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 3.7e-06 55.5 57 36.8
Ciclev10018905m.g Citrus clementina HOM05D000001 ORTHO05D011055 3.7e-06 55.5 62 37.1
Migut.F00229 Erythranthe guttata HOM05D000001 ORTHO05D000003 3.7e-06 55.5 99 26.3
MBI04_g28025_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 3.7e-06 55.5 56 41.1
MD12G1028100 Malus domestica HOM05D000001 ORTHO05D000003 3.7e-06 55.5 61 34.4
Nn4g23581 Nelumbo nucifera HOM05D000001 ORTHO05D000003 3.7e-06 55.5 57 36.8
Oeu002959.1 Olea europaea HOM05D000001 ORTHO05D009961 3.7e-06 55.5 59 37.3
PSO063G2225 Papaver somniferum HOM05D000001 ORTHO05D000003 3.7e-06 55.5 62 37.1
PSO782G5756 Papaver somniferum HOM05D000001 ORTHO05D000003 3.7e-06 55.5 62 37.1
QL11p018247 Quercus lobata HOM05D000001 ORTHO05D000003 3.7e-06 55.5 57 35.1
Sp5g09690 Schrenkiella parvula HOM05D000001 ORTHO05D000003 3.7e-06 55.5 57 40.4
TAR374G1557 Trochodendron aralioides HOM05D000001 ORTHO05D000003 3.7e-06 55.5 67 32.8
Aa31LG9G2470 Aethionema arabicum HOM05D000001 ORTHO05D000003 4.8e-06 55.1 59 39.0
arahy.Tifrunner.gnm1.ann1.QNR046 Arachis hypogaea HOM05D000001 ORTHO05D000003 4.8e-06 55.1 61 34.4
Ciclev10024954m.g Citrus clementina HOM05D000001 ORTHO05D000003 4.8e-06 55.1 57 33.3
FAN23G0426 Fragaria x ananassa HOM05D000001 ORTHO05D022480 4.8e-06 55.1 62 37.1
Lsat_1_v5_gn_1_9920 Lactuca sativa HOM05D000001 ORTHO05D000003 4.8e-06 55.1 62 33.9
MD09G1077700 Malus domestica HOM05D000001 ORTHO05D015419 4.8e-06 55.1 57 40.4
Oeu007009.1 Olea europaea HOM05D000001 ORTHO05D000003 4.8e-06 55.1 56 33.9
Os05g0455900 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D000003 4.8e-06 55.1 57 33.3
PGR142G1477 Punica granatum HOM05D000001 ORTHO05D009097 4.8e-06 55.1 63 31.7
Rhsim13G0222900 Rhododendron simsii HOM05D000001 ORTHO05D000003 4.8e-06 55.1 59 39.0
Thecc.01G113200 Theobroma cacao HOM05D000001 ORTHO05D000003 4.8e-06 55.1 56 32.1
TPR.G2208 Trifolium pratense HOM05D000001 ORTHO05D000003 4.8e-06 55.1 57 33.3
TAR381G1478 Trochodendron aralioides HOM05D000001 ORTHO05D000003 4.8e-06 55.1 64 32.8
TAR629G0372 Trochodendron aralioides HOM05D000001 ORTHO05D048459 4.8e-06 55.1 62 35.5
CSS0024934 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 6.3e-06 54.7 57 31.6
CANSAT25G1295 Cannabis sativa HOM05D000001 ORTHO05D000003 6.3e-06 54.7 59 37.3
CiPaw.03G080800 Carya illinoinensis HOM05D000001 ORTHO05D000003 6.3e-06 54.7 57 36.8
COL.COLO4_11009 Corchorus olitorius HOM05D000001 ORTHO05D000003 6.3e-06 54.7 62 29.0
MELO3C030050.2 Cucumis melo HOM05D000001 ORTHO05D000003 6.3e-06 54.7 62 32.3
FvH4_6g45980 Fragaria vesca HOM05D000001 ORTHO05D000003 6.3e-06 54.7 62 35.5
FAN02G0375 Fragaria x ananassa HOM05D000001 ORTHO05D000003 6.3e-06 54.7 62 35.5
FAN05G1182 Fragaria x ananassa HOM05D000001 ORTHO05D000003 6.3e-06 54.7 62 35.5
FAN05G3610 Fragaria x ananassa HOM05D000001 ORTHO05D000003 6.3e-06 54.7 57 36.8
FAN08G2948 Fragaria x ananassa HOM05D000001 ORTHO05D000003 6.3e-06 54.7 62 35.5
FAN09G2532 Fragaria x ananassa HOM05D000001 ORTHO05D000003 6.3e-06 54.7 62 35.5
FAN11G0628 Fragaria x ananassa HOM05D000001 ORTHO05D000003 6.3e-06 54.7 62 35.5
FAN14G1225 Fragaria x ananassa HOM05D000001 ORTHO05D000003 6.3e-06 54.7 62 35.5
Gohir.A13G153900 Gossypium hirsutum HOM05D000001 ORTHO05D010923 6.3e-06 54.7 59 37.3
Lsat_1_v5_gn_8_17900 Lactuca sativa HOM05D000001 ORTHO05D000003 6.3e-06 54.7 58 32.8
MBI08_g09790_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D017495 6.3e-06 54.7 58 39.7
Manes.06G048800 Manihot esculenta HOM05D000001 ORTHO05D009097 6.3e-06 54.7 64 34.4
PGR004G0144 Punica granatum HOM05D000001 ORTHO05D000003 6.3e-06 54.7 58 41.4
PGR102G1171 Punica granatum HOM05D000001 ORTHO05D010162 6.3e-06 54.7 61 31.1
QL02p053805 Quercus lobata HOM05D000001 ORTHO05D000003 6.3e-06 54.7 62 37.1
SEGI_12881 Sequoiadendron giganteum HOM05D000001 ORTHO05D015419 6.3e-06 54.7 57 36.8
Sc16g0006110 Simmondsia chinensis HOM05D000001 ORTHO05D009857 6.3e-06 54.7 62 33.9
Zm00001eb293980 Zea mays HOM05D000001 ORTHO05D000003 6.3e-06 54.7 57 33.3
AagrBONN_evm.TU.Sc2ySwM_344.1840 Anthoceros agrestis HOM05D000001 ORTHO05D000003 8.2e-06 54.3 67 35.8
EL10Ac3g05477 Beta vulgaris HOM05D000001 ORTHO05D000003 8.2e-06 54.3 57 35.1
BcaC08g44233 Brassica carinata HOM05D000001 ORTHO05D000003 8.2e-06 54.3 57 40.4
C06p16400 Brassica napus HOM05D000001 ORTHO05D000003 8.2e-06 54.3 57 40.4
BolC6t36839H Brassica oleracea HOM05D000001 ORTHO05D000003 8.2e-06 54.3 57 40.4
COL.COLO4_03845 Corchorus olitorius HOM05D000001 ORTHO05D000003 8.2e-06 54.3 63 30.2
ECA246G1669 Erigeron canadensis HOM05D000001 ORTHO05D009961 8.2e-06 54.3 59 35.6
FAN09G4672 Fragaria x ananassa HOM05D000001 ORTHO05D010091 8.2e-06 54.3 63 33.3
Gohir.A12G057000 Gossypium hirsutum HOM05D000001 ORTHO05D000003 8.2e-06 54.3 57 35.1
Gorai.008G059500 Gossypium raimondii HOM05D000001 ORTHO05D000003 8.2e-06 54.3 57 35.1
HanXRQChr08g0219761 Helianthus annuus HOM05D000001 ORTHO05D000003 8.2e-06 54.3 58 34.5
Lsat_1_v5_gn_8_96760 Lactuca sativa HOM05D000001 ORTHO05D009485 8.2e-06 54.3 59 35.6
Lj7P709T35 Lonicera japonica HOM05D000001 ORTHO05D010146 8.2e-06 54.3 58 32.8
MBI16_g35807_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D011365 8.2e-06 54.3 89 29.2
Nn1g05913 Nelumbo nucifera HOM05D000001 ORTHO05D009961 8.2e-06 54.3 61 36.1
Nitab4.5_0009733g0010 Nicotiana tabacum HOM05D000001 ORTHO05D000003 8.2e-06 54.3 62 35.5
Os08g0340900 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D000003 8.2e-06 54.3 58 34.5
Peaxi162Scf00082g00025 Petunia axillaris HOM05D000001 ORTHO05D010162 8.2e-06 54.3 60 31.7
Psat7g227840 Pisum sativum HOM05D000001 ORTHO05D000003 8.2e-06 54.3 57 33.3
Rhsim09G0119800 Rhododendron simsii HOM05D000001 ORTHO05D000003 8.2e-06 54.3 57 35.1
SEGI_33166 Sequoiadendron giganteum HOM05D000001 ORTHO05D000003 8.2e-06 54.3 57 31.6
SEGI_41408 Sequoiadendron giganteum HOM05D000001 ORTHO05D000003 8.2e-06 54.3 57 31.6
PGSC0003DMG400019440 Solanum tuberosum HOM05D000001 ORTHO05D000003 8.2e-06 54.3 62 35.5
THA.LOC109116476 Tarenaya hassleriana HOM05D000001 ORTHO05D000003 8.2e-06 54.3 57 35.1
TAR628G0984 Trochodendron aralioides HOM05D000001 ORTHO05D000003 8.2e-06 54.3 63 34.9
VMungo1127G0647 Vigna mungo HOM05D000001 ORTHO05D000003 8.2e-06 54.3 131 24.4
GSVIVG01012938001 Vitis vinifera HOM05D000001 ORTHO05D010923 8.2e-06 54.3 57 38.6


User provided reference genes

Program Settings