Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0789G167 Amborella trichopoda HOM05D002705 ORTHO05D004955 0.0e+00 1374.8 680 100.0
Mapoly0020s0153 Marchantia polymorpha HOM05D002705 ORTHO05D004955 1.1e-85 322.0 590 34.1
AagrBONN_evm.TU.Sc2ySwM_368.2221 Anthoceros agrestis HOM05D002705 ORTHO05D004955 4.2e-85 320.1 588 35.0
MCO05G634 Micromonas commoda HOM05D002705 ORTHO05D004955 9.3e-61 239.2 610 29.5
Pp3s32_280 Physcomitrium patens HOM05D020685 ORTHO05D022318 8.7e-59 232.6 576 29.7
PRCOL_00004767 Prasinoderma coloniale HOM05D002705 ORTHO05D004955 5.1e-43 180.3 556 29.1
Pp3s70_120 Physcomitrium patens HOM05D002705 ORTHO05D004955 4.3e-42 177.2 618 26.9
Cfa026800 Carpinus fangiana HOM05D002705 ORTHO05D004955 4.8e-41 173.7 614 26.4
Cre07.g314400 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 6.3e-41 173.3 619 26.5
PSO675G1384 Papaver somniferum HOM05D002705 ORTHO05D004955 1.1e-34 152.5 488 27.0
DCAR_014643 Daucus carota HOM05D002705 ORTHO05D004955 7.4e-34 149.8 491 25.1
Pp3c1_29170 Physcomitrium patens HOM05D002705 ORTHO05D004955 2.8e-33 147.9 475 25.5
EL10As1g23078 Beta vulgaris HOM05D002705 ORTHO05D004955 6.3e-33 146.7 484 25.8
Atru.chr6.2006 Acer truncatum HOM05D002705 ORTHO05D004955 8.2e-33 146.4 487 26.1
Aqoxy7G00864 Aquilegia oxysepala HOM05D002705 ORTHO05D004955 1.1e-32 146.0 487 25.7
Haze_22224 Corylus avellana HOM05D002705 ORTHO05D004955 1.1e-32 146.0 489 25.2
Atru.chr6.1980 Acer truncatum HOM05D002705 ORTHO05D004955 1.4e-32 145.6 487 26.1
Sed0003657 Sechium edule HOM05D002705 ORTHO05D004955 1.4e-32 145.6 488 26.2
Cfa013602 Carpinus fangiana HOM05D002705 ORTHO05D004955 3.1e-32 144.4 482 25.3
Ciclev10033740m.g Citrus clementina HOM05D002705 ORTHO05D004955 5.3e-32 143.7 483 25.3
Nn1g00769 Nelumbo nucifera HOM05D002705 ORTHO05D004955 5.3e-32 143.7 490 26.3
ClCG01G004930 Citrullus lanatus HOM05D002705 ORTHO05D004955 1.2e-31 142.5 485 27.0
MELO3C005443.2 Cucumis melo HOM05D002705 ORTHO05D004955 1.2e-31 142.5 485 26.2
Glyma.20G198400 Glycine max HOM05D002705 ORTHO05D004955 1.2e-31 142.5 580 24.1
PGR142G4199 Punica granatum HOM05D002705 ORTHO05D004955 1.2e-31 142.5 482 25.1
THA.LOC104825051 Tarenaya hassleriana HOM05D002705 ORTHO05D004955 1.5e-31 142.1 475 26.1
Phvul.L001885 Phaseolus vulgaris HOM05D002705 ORTHO05D004955 2.0e-31 141.7 578 23.5
Mapoly0067s0049 Marchantia polymorpha HOM05D002705 ORTHO05D004955 2.6e-31 141.4 470 25.3
QL09p027408 Quercus lobata HOM05D002705 ORTHO05D004955 2.6e-31 141.4 489 25.6
Cpa.g.sc13.232 Carica papaya HOM05D002705 ORTHO05D004955 3.5e-31 141.0 486 25.7
Ah.02g115400 Amaranthus hybridus HOM05D002705 ORTHO05D004955 4.5e-31 140.6 488 27.0
Lsat_1_v5_gn_0_9880 Lactuca sativa HOM05D002705 ORTHO05D004955 4.5e-31 140.6 491 24.0
Potri.012G114100 Populus trichocarpa HOM05D002705 ORTHO05D004955 4.5e-31 140.6 490 25.1
Sabra12G0083000 Salix brachista HOM05D002705 ORTHO05D004955 4.5e-31 140.6 488 25.4
CsaV3_5G005160 Cucumis sativus L. HOM05D002705 ORTHO05D004955 5.9e-31 140.2 485 26.2
AL7G28030 Arabidopsis lyrata HOM05D002705 ORTHO05D004955 7.7e-31 139.8 489 25.8
BcaC06g32837 Brassica carinata HOM05D002705 ORTHO05D004955 7.7e-31 139.8 487 26.1
Hma1.2p1_2119F.1_g314370 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 7.7e-31 139.8 475 25.3
Sp7g23120 Schrenkiella parvula HOM05D002705 ORTHO05D004955 1.0e-30 139.4 487 25.9
TPR.G18561 Trifolium pratense HOM05D002705 ORTHO05D004955 1.0e-30 139.4 499 23.4
Psat6g140240 Pisum sativum HOM05D002705 ORTHO05D004955 1.3e-30 139.0 492 24.4
Eucgr.K00116 Eucalyptus grandis HOM05D002705 ORTHO05D004955 1.7e-30 138.7 494 24.3
TAR636G2282 Trochodendron aralioides HOM05D002705 ORTHO05D004955 1.7e-30 138.7 515 25.0
CiPaw.07G183200 Carya illinoinensis HOM05D002705 ORTHO05D004955 2.2e-30 138.3 487 25.1
AT4G25120 Arabidopsis thaliana HOM05D002705 ORTHO05D004955 3.8e-30 137.5 485 25.6
GSVIVG01013853001 Vitis vinifera HOM05D002705 ORTHO05D004955 3.8e-30 137.5 487 26.7
Aa31LG7G10510 Aethionema arabicum HOM05D002705 ORTHO05D004955 5.0e-30 137.1 485 25.8
Rhsim03G0158700 Rhododendron simsii HOM05D002705 ORTHO05D004955 5.0e-30 137.1 483 25.1
Cc00_g24340 Coffea canephora HOM05D002705 ORTHO05D004955 6.5e-30 136.7 478 25.1
Medtr1g072800 Medicago truncatula HOM05D002705 ORTHO05D004955 6.5e-30 136.7 492 24.2
Os07g0492100 Oryza sativa ssp. japonica HOM05D002705 ORTHO05D004955 8.5e-30 136.3 489 25.4
Actinidia13623 Actinidia chinensis HOM05D002705 ORTHO05D004955 1.4e-29 135.6 487 24.2
SalBow2G1886 Salvia bowleyana HOM05D002705 ORTHO05D004955 1.9e-29 135.2 479 26.3
Thecc.03G145700 Theobroma cacao HOM05D002705 ORTHO05D004955 2.5e-29 134.8 479 26.7
AagrBONN_evm.TU.Sc2ySwM_117.709 Anthoceros agrestis HOM05D002705 ORTHO05D004955 3.2e-29 134.4 592 23.8
Thhalv10024258m.g Eutrema salsugineum HOM05D002705 ORTHO05D004955 3.2e-29 134.4 494 26.3
Lalb_Chr06g0169611 Lupinus albus HOM05D002705 ORTHO05D004955 3.2e-29 134.4 475 23.8
HanXRQChr15g0493601 Helianthus annuus HOM05D002705 ORTHO05D004955 4.2e-29 134.0 485 24.1
Solyc03g093850.2 Solanum lycopersicum HOM05D002705 ORTHO05D004955 5.5e-29 133.7 481 25.6
Sopen03g024730 Solanum pennellii HOM05D002705 ORTHO05D004955 5.5e-29 133.7 481 25.6
SGA_v2.0_scaffold352G49687 Striga asiatica HOM05D002705 ORTHO05D004955 7.2e-29 133.3 479 25.5
Carub.0007s1591 Capsella rubella HOM05D002705 ORTHO05D004955 9.4e-29 132.9 487 26.7
RcHm_v2.0_Chr1g0373301 Rosa chinensis HOM05D002705 ORTHO05D004955 1.6e-28 132.1 484 24.8
vmacro06848 Vaccinium macrocarpon HOM05D002705 ORTHO05D004955 1.6e-28 132.1 514 25.1
ECA232G4016 Erigeron canadensis HOM05D002705 ORTHO05D004955 2.7e-28 131.3 522 23.8
HPP92_003517 Vanilla planifolia HOM05D002705 ORTHO05D004955 2.7e-28 131.3 482 25.1
SMO118G0423 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 3.6e-28 131.0 482 25.9
CANSAT56G1220 Cannabis sativa HOM05D002705 ORTHO05D004955 4.7e-28 130.6 488 24.8
TWI39G0103 Tripterygium wilfordii HOM05D002705 ORTHO05D004955 4.7e-28 130.6 491 24.8
ATR0665G329 Amborella trichopoda HOM05D002705 ORTHO05D004955 6.1e-28 130.2 477 27.3
Oeu044165.1 Olea europaea HOM05D002705 ORTHO05D004955 6.1e-28 130.2 490 25.1
Gohir.D09G249500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 1.0e-27 129.4 506 25.9
Gorai.006G273800 Gossypium raimondii HOM05D002705 ORTHO05D004955 1.0e-27 129.4 506 25.9
Gohir.A09G248500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 1.4e-27 129.0 501 25.9
Prupe.2G270600 Prunus persica HOM05D002705 ORTHO05D004955 1.4e-27 129.0 489 24.5
Migut.F01210 Erythranthe guttata HOM05D002705 ORTHO05D004955 1.8e-27 128.6 494 25.1
AagrBONN_evm.TU.Sc2ySwM_362.2714 Anthoceros agrestis HOM05D002705 ORTHO05D004955 3.0e-27 127.9 481 28.3
Lj5g0005183 Lotus japonicus HOM05D002705 ORTHO05D004955 3.0e-27 127.9 573 23.4
MD07G1244800 Malus domestica HOM05D002705 ORTHO05D004955 3.0e-27 127.9 486 24.3
FvH4_7g26710 Fragaria vesca HOM05D002705 ORTHO05D004955 5.2e-27 127.1 484 24.6
FAN01G0508 Fragaria x ananassa HOM05D002705 ORTHO05D004955 5.2e-27 127.1 479 25.5
Dinv34540 Davidia involucrata HOM05D002705 ORTHO05D004955 6.7e-27 126.7 478 23.2
SMO263G0015 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 8.8e-27 126.3 479 24.0
CBR_g22322 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-26 125.9 375 28.3
Nitab4.5_0010058g0010 Nicotiana tabacum HOM05D002705 ORTHO05D004955 1.1e-26 125.9 492 24.6
Ca_09785_v3 Cicer arietinum L. HOM05D002705 ORTHO05D004955 1.5e-26 125.6 493 23.9
FAN06G0843 Fragaria x ananassa HOM05D002705 ORTHO05D004955 1.5e-26 125.6 484 24.4
FAN03G2179 Fragaria x ananassa HOM05D002705 ORTHO05D004955 2.0e-26 125.2 484 24.4
AUR62042388 Chenopodium quinoa HOM05D002705 ORTHO05D004955 1.3e-25 122.5 371 26.7
Manes.14G040900 Manihot esculenta HOM05D002705 ORTHO05D004955 1.7e-25 122.1 449 23.4
MD07G1243100 Malus domestica HOM05D002705 ORTHO05D004955 2.0e-23 115.2 499 23.6
Cre07.g343333 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 5.9e-23 113.6 272 30.5
MD07G1243600 Malus domestica HOM05D002705 ORTHO05D004955 1.7e-22 112.1 402 25.1
Lj8C49G2 Lonicera japonica HOM05D002705 ORTHO05D004955 6.5e-22 110.2 284 26.1
Hma1.2p1_2119F.1_g314360 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 1.1e-21 109.4 529 24.0
MD07G1244300 Malus domestica HOM05D002705 ORTHO05D004955 1.6e-20 105.5 494 22.9
unitig_578.g16613 Utricularia gibba HOM05D002705 ORTHO05D004955 1.6e-20 105.5 496 22.0
BraA03t14645Z Brassica rapa HOM05D002705 ORTHO05D004955 3.6e-20 104.4 485 23.3
A03p55770 Brassica napus HOM05D002705 ORTHO05D004955 4.7e-20 104.0 485 23.3
C07p54050 Brassica napus HOM05D002705 ORTHO05D004955 1.0e-19 102.8 484 22.3
BolC7t45891H Brassica oleracea HOM05D002705 ORTHO05D004955 1.0e-19 102.8 484 22.3
CSS0042603 Camellia sinensis var. sinensis HOM05D002705 ORTHO05D004955 1.0e-19 102.8 515 23.1
MSTRG.8400 Avicennia marina HOM05D002705 ORTHO05D004955 1.8e-19 102.1 238 28.2
CAN.G408.1 Capsicum annuum HOM05D002705 ORTHO05D004955 1.8e-19 102.1 233 28.3
Nitab4.5_0000103g0340 Nicotiana tabacum HOM05D002705 ORTHO05D004955 4.4e-18 97.4 234 27.8
arahy.Tifrunner.gnm1.ann1.WYM0Y2 Arachis hypogaea HOM05D002705 ORTHO05D004955 7.5e-18 96.7 312 26.6
arahy.Tifrunner.gnm1.ann1.ZG0SUW Arachis hypogaea HOM05D002705 ORTHO05D004955 9.7e-18 96.3 312 26.6
Sc11g0004220 Simmondsia chinensis HOM05D002705 ORTHO05D004955 5.3e-16 90.5 200 29.5
FAN10G0038 Fragaria x ananassa HOM05D002705 ORTHO05D004955 9.1e-16 89.7 516 22.5
SEGI_13522 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 1.2e-15 89.4 420 22.9
MD07G1245700 Malus domestica HOM05D002705 ORTHO05D004955 2.7e-15 88.2 255 25.1
Peaxi162Scf00073g01729 Petunia axillaris HOM05D002705 ORTHO05D004955 2.7e-15 88.2 243 26.7
MD07G1241700 Malus domestica HOM05D002705 ORTHO05D004955 5.9e-15 87.0 325 24.0
SEGI_17474 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 5.9e-15 87.0 111 44.1
AagrBONN_evm.TU.Sc2ySwM_340.578 Anthoceros agrestis HOM05D002705 ORTHO05D004955 3.2e-13 81.3 127 34.6
CAN.G1654.1 Capsicum annuum HOM05D002705 ORTHO05D004955 3.2e-13 81.3 275 24.0
Cre07.g312250 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 5.5e-13 80.5 101 43.6
CAN.G1406.2 Capsicum annuum HOM05D002705 ORTHO05D004955 6.1e-12 77.0 233 24.9
Cre07.g312150 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 6.1e-12 77.0 85 45.9
Medtr0675s0010 Medicago truncatula HOM05D002705 ORTHO05D004955 1.4e-11 75.9 456 22.1
COL.COLO4_37311 Corchorus olitorius HOM05D002705 ORTHO05D004955 6.8e-11 73.6 187 28.9
SEGI_14932 Sequoiadendron giganteum HOM05D016114 ORTHO05D017362 8.8e-11 73.2 47 68.1
CBR_g46888 Chara braunii HOM05D002705 ORTHO05D004955 1.2e-10 72.8 121 36.4
SMO119G0107 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 3.4e-10 71.2 214 27.1
FAN05G3181 Fragaria x ananassa HOM05D002705 ORTHO05D004955 4.4e-10 70.9 321 22.4
SEGI_26843 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 4.8e-09 67.4 127 30.7
HPP92_027816 Vanilla planifolia HOM05D002705 ORTHO05D004955 2.4e-08 65.1 98 33.7
SEGI_07071 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 1.6e-07 62.4 111 30.6
Pp3s70_20 Physcomitrium patens HOM05D002705 ORTHO05D313936 1.3e-06 59.3 228 25.9
CAN.G1654.2 Capsicum annuum HOM05D002705 ORTHO05D004955 3.8e-06 57.8 75 34.7


User provided reference genes

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