Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0789G091 Amborella trichopoda HOM05D004177 ORTHO05D004826 2.8e-213 745.0 367 100.0
TAR636G0014 Trochodendron aralioides HOM05D004177 ORTHO05D004826 8.6e-170 600.5 366 78.1
vmacro00113 Vaccinium macrocarpon HOM05D004177 ORTHO05D004826 1.2e-168 596.7 369 78.6
MBI04_g06223_MAGBIO Magnolia biondii HOM05D004177 ORTHO05D004826 2.1e-168 595.9 377 76.7
Actinidia29891 Actinidia chinensis HOM05D004177 ORTHO05D004826 2.8e-168 595.5 366 78.4
Nn6g35409 Nelumbo nucifera HOM05D004177 ORTHO05D004826 3.6e-168 595.1 355 79.7
VMungo0464G2175 Vigna mungo HOM05D004177 ORTHO05D004826 3.6e-168 595.1 359 79.9
Phvul.004G172700 Phaseolus vulgaris HOM05D004177 ORTHO05D004826 8.0e-168 594.0 359 79.9
arahy.Tifrunner.gnm1.ann1.H1EJ8W Arachis hypogaea HOM05D004177 ORTHO05D004826 1.4e-167 593.2 369 77.0
arahy.Tifrunner.gnm1.ann1.TIR1N2 Arachis hypogaea HOM05D004177 ORTHO05D004826 1.4e-167 593.2 369 77.0
Ciclev10008698m.g Citrus clementina HOM05D004177 ORTHO05D004826 1.8e-167 592.8 357 79.0
Ca_18171_v3 Cicer arietinum L. HOM05D004177 ORTHO05D004826 2.3e-167 592.4 365 77.0
Glyma.07G127600 Glycine max HOM05D004177 ORTHO05D004826 2.3e-167 592.4 365 78.4
TPR.G38463 Trifolium pratense HOM05D004177 ORTHO05D004826 3.1e-167 592.0 364 77.7
Dinv36734 Davidia involucrata HOM05D004177 ORTHO05D004826 4.0e-167 591.7 362 77.1
Actinidia25277 Actinidia chinensis HOM05D004177 ORTHO05D004826 5.2e-167 591.3 363 76.9
GSVIVG01008468001 Vitis vinifera HOM05D004177 ORTHO05D004826 1.2e-166 590.1 359 78.3
Psat7g081120 Pisum sativum HOM05D004177 ORTHO05D004826 2.0e-166 589.3 365 77.8
PGR142G0935 Punica granatum HOM05D004177 ORTHO05D004826 2.0e-166 589.3 366 77.6
Aqoxy2G03855 Aquilegia oxysepala HOM05D004177 ORTHO05D004826 2.6e-166 589.0 367 76.8
THA.LOC104816571 Tarenaya hassleriana HOM05D004177 ORTHO05D004826 2.6e-166 589.0 362 77.9
Hma1.2p1_1074F.1_g254310 Hydrangea macrophylla HOM05D004177 ORTHO05D004826 3.4e-166 588.6 360 78.1
Hma1.2p1_0663F.1_g198701 Hydrangea macrophylla HOM05D004177 ORTHO05D004826 5.8e-166 587.8 361 77.0
CsaV3_5G024780 Cucumis sativus L. HOM05D004177 ORTHO05D004826 9.8e-166 587.0 363 76.3
QL02p063435 Quercus lobata HOM05D004177 ORTHO05D004826 1.7e-165 586.3 365 77.0
Eucgr.C00926 Eucalyptus grandis HOM05D004177 ORTHO05D004826 2.9e-165 585.5 362 76.8
Manes.15G104600 Manihot esculenta HOM05D004177 ORTHO05D004826 3.7e-165 585.1 360 77.2
Cfa003130 Carpinus fangiana HOM05D004177 ORTHO05D004826 4.9e-165 584.7 364 77.5
Potri.003G186900 Populus trichocarpa HOM05D004177 ORTHO05D004826 6.4e-165 584.3 359 76.9
AUR62003036 Chenopodium quinoa HOM05D004177 ORTHO05D004826 1.1e-164 583.6 356 78.4
MELO3C005126.2 Cucumis melo HOM05D004177 ORTHO05D004826 1.1e-164 583.6 357 77.3
TWI09G1015 Tripterygium wilfordii HOM05D004177 ORTHO05D004826 1.1e-164 583.6 360 77.5
Atru.chr7.1532 Acer truncatum HOM05D004177 ORTHO05D004826 1.4e-164 583.2 356 78.1
AUR62007842 Chenopodium quinoa HOM05D004177 ORTHO05D004826 1.9e-164 582.8 356 78.1
Lsat_1_v5_gn_8_88081 Lactuca sativa HOM05D004177 ORTHO05D004826 1.9e-164 582.8 362 76.5
CiPaw.03G219400 Carya illinoinensis HOM05D004177 ORTHO05D004826 2.4e-164 582.4 364 76.6
Duzib114G0142 Durio zibethinus HOM05D004177 ORTHO05D004826 2.4e-164 582.4 358 76.8
Cc06_g10990 Coffea canephora HOM05D004177 ORTHO05D004826 5.4e-164 581.3 364 76.1
THA.LOC104826863 Tarenaya hassleriana HOM05D004177 ORTHO05D004826 5.4e-164 581.3 356 77.5
BcaC06g32302 Brassica carinata HOM05D004177 ORTHO05D004826 7.0e-164 580.9 358 77.7
C09p70810 Brassica napus HOM05D004177 ORTHO05D004826 7.0e-164 580.9 358 77.7
MD15G1202800 Malus domestica HOM05D004177 ORTHO05D004826 9.2e-164 580.5 355 77.2
Rhsim03G0234600 Rhododendron simsii HOM05D004177 ORTHO05D004826 1.2e-163 580.1 369 77.5
Sabra03G0136900 Salix brachista HOM05D004177 ORTHO05D004826 1.6e-163 579.7 359 76.0
CANSAT11G0575 Cannabis sativa HOM05D004177 ORTHO05D004826 2.7e-163 578.9 357 75.6
HPP92_011031 Vanilla planifolia HOM05D004177 ORTHO05D004826 3.5e-163 578.6 367 75.5
AUR62027470 Chenopodium quinoa HOM05D004177 ORTHO05D004826 4.6e-163 578.2 357 76.5
Lalb_Chr24g0393931 Lupinus albus HOM05D004177 ORTHO05D004826 6.0e-163 577.8 367 75.7
SGA_v2.0_scaffold62G21577 Striga asiatica HOM05D004177 ORTHO05D004826 6.0e-163 577.8 365 75.3
Ah.09g228420 Amaranthus hybridus HOM05D004177 ORTHO05D004826 7.8e-163 577.4 362 74.9
Sp6g36980 Schrenkiella parvula HOM05D004177 ORTHO05D004826 7.8e-163 577.4 358 76.8
Sopen02g025490 Solanum pennellii HOM05D004177 ORTHO05D004826 7.8e-163 577.4 373 74.5
Thecc.10G003500 Theobroma cacao HOM05D004177 ORTHO05D004826 7.8e-163 577.4 360 75.6
TPR.G9556 Trifolium pratense HOM05D004177 ORTHO05D004826 7.8e-163 577.4 366 77.0
AL6G15840 Arabidopsis lyrata HOM05D004177 ORTHO05D004826 1.0e-162 577.0 357 76.8
Sc14g0000820 Simmondsia chinensis HOM05D004177 ORTHO05D004826 1.0e-162 577.0 357 77.6
Lj1g0019759 Lotus japonicus HOM05D004177 ORTHO05D004826 1.3e-162 576.6 361 77.3
Solyc02g080800.4 Solanum lycopersicum HOM05D004177 ORTHO05D004826 1.3e-162 576.6 373 74.8
AT5G05920 Arabidopsis thaliana HOM05D004177 ORTHO05D004826 2.3e-162 575.9 358 76.3
A10p30370 Brassica napus HOM05D004177 ORTHO05D004826 2.3e-162 575.9 365 76.2
ECA233G2252 Erigeron canadensis HOM05D004177 ORTHO05D004826 2.3e-162 575.9 363 75.5
Prupe.7G214500 Prunus persica HOM05D004177 ORTHO05D004826 3.0e-162 575.5 356 75.6
SalBow6G4427 Salvia bowleyana HOM05D004177 ORTHO05D004826 3.0e-162 575.5 362 76.0
Aa31LG11G6950 Aethionema arabicum HOM05D004177 ORTHO05D004826 3.9e-162 575.1 358 76.5
Migut.J00439 Erythranthe guttata HOM05D004177 ORTHO05D004826 5.0e-162 574.7 369 75.3
HanXRQChr09g0263461 Helianthus annuus HOM05D004177 ORTHO05D004826 5.0e-162 574.7 361 76.5
Thhalv10013870m.g Eutrema salsugineum HOM05D004177 ORTHO05D004826 6.6e-162 574.3 363 75.2
BraA10t45083Z Brassica rapa HOM05D004177 ORTHO05D004826 1.1e-161 573.5 378 74.3
Gohir.D10G201600 Gossypium hirsutum HOM05D004177 ORTHO05D004826 1.9e-161 572.8 358 76.3
MD02G1073000 Malus domestica HOM05D004177 ORTHO05D004826 3.3e-161 572.0 351 76.6
RcHm_v2.0_Chr2g0092611 Rosa chinensis HOM05D004177 ORTHO05D004826 3.3e-161 572.0 360 74.4
BolC9t59847H Brassica oleracea HOM05D004177 ORTHO05D004826 4.3e-161 571.6 385 72.7
Sed0022999 Sechium edule HOM05D004177 ORTHO05D004826 4.3e-161 571.6 357 76.5
CiPaw.12G022300 Carya illinoinensis HOM05D004177 ORTHO05D004826 7.3e-161 570.9 368 75.8
Gorai.011G226300 Gossypium raimondii HOM05D004177 ORTHO05D004826 1.2e-160 570.1 358 76.0
Ca_14076_v3 Cicer arietinum L. HOM05D004177 ORTHO05D004826 2.8e-160 568.9 365 75.3
Carub.0006s0480 Capsella rubella HOM05D004177 ORTHO05D004826 6.2e-160 567.8 363 74.7
CAN.G1014.11 Capsicum annuum HOM05D004177 ORTHO05D004826 6.2e-160 567.8 363 74.9
ClCG01G007700 Citrullus lanatus HOM05D004177 ORTHO05D004826 6.2e-160 567.8 373 73.5
FvH4_1g06830 Fragaria vesca HOM05D004177 ORTHO05D004826 6.2e-160 567.8 357 74.5
ECA236G1557 Erigeron canadensis HOM05D004177 ORTHO05D004826 1.1e-159 567.0 369 73.7
Lsat_1_v5_gn_8_88021 Lactuca sativa HOM05D004177 ORTHO05D004826 1.4e-159 566.6 362 74.0
PSO210G7296 Papaver somniferum HOM05D004177 ORTHO05D004826 1.8e-159 566.2 367 74.4
MSTRG.19533 Avicennia marina HOM05D004177 ORTHO05D004826 4.0e-159 565.1 366 74.6
PSO210G0074 Papaver somniferum HOM05D004177 ORTHO05D004826 5.2e-159 564.7 369 74.3
HanXRQChr04g0112631 Helianthus annuus HOM05D004177 ORTHO05D004826 2.6e-158 562.4 369 74.5
Nitab4.5_0002695g0050 Nicotiana tabacum HOM05D004177 ORTHO05D004826 2.6e-158 562.4 374 72.7
Oeu052128.1 Olea europaea HOM05D004177 ORTHO05D004826 1.3e-157 560.1 344 77.3
Nitab4.5_0007963g0020 Nicotiana tabacum HOM05D004177 ORTHO05D004826 2.2e-157 559.3 382 70.7
Gorai.011G226400 Gossypium raimondii HOM05D004177 ORTHO05D004826 3.7e-157 558.5 358 74.6
BcaB05g21688 Brassica carinata HOM05D004177 ORTHO05D004826 4.9e-157 558.1 363 73.3
Gohir.D10G201700 Gossypium hirsutum HOM05D004177 ORTHO05D004826 6.4e-157 557.8 358 74.6
CSS0022162 Camellia sinensis var. sinensis HOM05D004177 ORTHO05D004826 8.3e-157 557.4 387 70.3
BolC2t06219H Brassica oleracea HOM05D004177 ORTHO05D004826 2.4e-156 555.8 363 73.0
Os03g0740600 Oryza sativa ssp. japonica HOM05D004177 ORTHO05D004826 3.5e-155 552.0 364 73.4
FAN28G1160 Fragaria x ananassa HOM05D004177 ORTHO05D004826 1.3e-154 550.1 369 71.5
Solyc02g080790.4 Solanum lycopersicum HOM05D004177 ORTHO05D004826 1.3e-154 550.1 363 71.9
SHI02807 Sapria himalayana HOM05D004177 ORTHO05D004826 3.9e-154 548.5 376 69.7
Gohir.A10G194600 Gossypium hirsutum HOM05D004177 ORTHO05D004826 5.1e-154 548.1 358 73.7
Sopen02g025480 Solanum pennellii HOM05D004177 ORTHO05D004826 5.1e-154 548.1 363 71.6
DCAR_012005 Daucus carota HOM05D004177 ORTHO05D004826 8.6e-154 547.4 354 75.1
BraA02t04865Z Brassica rapa HOM05D004177 ORTHO05D004826 2.1e-152 542.7 370 71.4
SEGI_08410 Sequoiadendron giganteum HOM05D004177 ORTHO05D004826 2.8e-152 542.3 347 74.4
Zm00001eb215220 Zea mays HOM05D004177 ORTHO05D004826 6.8e-151 537.7 367 72.2
PSO596G0001 Papaver somniferum HOM05D004177 ORTHO05D004826 8.9e-151 537.3 360 71.9
FAN26G2529 Fragaria x ananassa HOM05D004177 ORTHO05D004826 1.2e-150 537.0 368 70.4
unitig_27.g24734 Utricularia gibba HOM05D001806 ORTHO05D004826 7.6e-150 534.3 347 74.4
HPP92_001732 Vanilla planifolia HOM05D004177 ORTHO05D004826 9.9e-150 533.9 362 69.1
SMO337G0022 Selaginella moellendorffii HOM05D004177 ORTHO05D004826 1.7e-149 533.1 354 71.5
Pp3c2_9490 Physcomitrium patens HOM05D004177 ORTHO05D004826 4.9e-149 531.6 358 71.8
HPP92_014582 Vanilla planifolia HOM05D004177 ORTHO05D004826 4.9e-149 531.6 351 70.1
EL10Ac6g14643 Beta vulgaris HOM05D004177 ORTHO05D004826 5.4e-148 528.1 358 71.8
Zm00001eb085620 Zea mays HOM05D004177 ORTHO05D004826 3.0e-146 522.3 371 68.7
Haze_25874 Corylus avellana HOM05D004177 ORTHO05D004826 6.6e-146 521.2 388 67.0
AagrBONN_evm.TU.Sc2ySwM_344.1392 Anthoceros agrestis HOM05D004177 ORTHO05D004826 1.1e-145 520.4 336 72.9
COL.COLO4_19342 Corchorus olitorius HOM05D004177 ORTHO05D004826 1.8e-143 513.1 360 69.7
Cpa.g.sc19.251 Carica papaya HOM05D004177 ORTHO05D004826 5.2e-143 511.5 358 70.9
Mapoly0001s0219 Marchantia polymorpha HOM05D004177 ORTHO05D004826 2.2e-141 506.1 344 68.9
AUR62031232 Chenopodium quinoa HOM05D004177 ORTHO05D004826 1.1e-140 503.8 357 68.9
FAN19G3030 Fragaria x ananassa HOM05D004177 ORTHO05D004826 1.7e-138 496.5 357 67.8
Gohir.A10G194500 Gossypium hirsutum HOM05D004177 ORTHO05D004826 8.7e-138 494.2 358 68.4
vmacro06273 Vaccinium macrocarpon HOM05D004177 ORTHO05D004826 1.1e-137 493.8 437 60.0
FAN23G1990 Fragaria x ananassa HOM05D004177 ORTHO05D004826 1.9e-137 493.0 357 66.7
AagrBONN_evm.TU.Sc2ySwM_344.3440 Anthoceros agrestis HOM05D004177 ORTHO05D004826 3.3e-137 492.3 364 66.2
CARHR207300 Cardamine hirsuta HOM05D004177 ORTHO05D004826 4.3e-137 491.9 295 78.3
FAN26G0736 Fragaria x ananassa HOM05D004177 ORTHO05D004826 4.9e-133 478.4 365 65.5
MCO16G096 Micromonas commoda HOM05D004177 ORTHO05D004826 7.1e-132 474.6 353 64.6
TWI12G1142 Tripterygium wilfordii HOM05D004177 ORTHO05D004826 9.3e-132 474.2 276 82.2
HPP92_016636 Vanilla planifolia HOM05D004177 ORTHO05D004826 9.3e-132 474.2 290 77.6
PRCOL_00001978 Prasinoderma coloniale HOM05D004177 ORTHO05D004826 6.0e-131 471.5 350 65.1
MELO3C025268.2 Cucumis melo HOM05D004177 ORTHO05D004826 3.0e-130 469.2 357 66.4
Cre08.g369800 Chlamydomonas reinhardtii HOM05D004177 ORTHO05D004826 5.8e-126 454.9 334 62.3
CDE04G2922 Ceratophyllum demersum HOM05D004177 ORTHO05D004826 4.6e-123 445.3 362 61.9
Dinv42291 Davidia involucrata HOM05D004177 ORTHO05D004826 1.2e-118 430.6 243 84.4
Cre01.g018950 Chlamydomonas reinhardtii HOM05D004177 ORTHO05D004826 3.4e-118 429.1 314 64.3
Peaxi162Scf00178g01719 Petunia axillaris HOM05D004177 ORTHO05D004826 1.3e-114 417.2 723 37.5
Haze_27186 Corylus avellana HOM05D004177 ORTHO05D004826 1.2e-110 404.1 361 54.3
Sed0017389 Sechium edule HOM05D004177 ORTHO05D004826 5.7e-105 385.2 266 68.8
Nn4g24829 Nelumbo nucifera HOM05D004177 ORTHO05D004826 3.4e-102 375.9 239 72.0
AagrBONN_evm.TU.Sc2ySwM_362.473 Anthoceros agrestis HOM05D004177 ORTHO05D004826 2.6e-97 359.8 336 57.7
Os09g0421100 Oryza sativa ssp. japonica HOM05D004177 ORTHO05D004826 5.7e-97 358.6 340 55.9
CBR_g31495 Chara braunii HOM05D004177 ORTHO05D004826 8.2e-96 354.8 250 66.0
SGA_v2.0_scaffold439G51649 Striga asiatica HOM05D004177 ORTHO05D004826 2.5e-92 343.2 228 70.2
SGA_v2.0_scaffold439G51638 Striga asiatica HOM05D004177 ORTHO05D004826 4.7e-75 285.8 202 70.3
Hund18418 Selenicereus undatus HOM05D004177 ORTHO05D004826 2.8e-72 276.6 291 52.6
CAN.G744.9 Capsicum annuum HOM05D004177 ORTHO05D004826 6.4e-48 195.7 138 67.4
AagrBONN_evm.TU.Sc2ySwM_117.1724 Anthoceros agrestis HOM05D004177 ORTHO05D004826 1.4e-42 177.9 200 49.5
Oeu062208.1 Olea europaea HOM05D004177 ORTHO05D004826 3.1e-42 176.8 129 72.1
Oeu062213.1 Olea europaea HOM05D004177 ORTHO05D004826 3.1e-42 176.8 129 72.1
Oeu062209.1 Olea europaea HOM05D004177 ORTHO05D004826 1.2e-41 174.9 129 72.1
Oeu062211.1 Olea europaea HOM05D004177 ORTHO05D004826 2.9e-40 170.2 128 69.5
HanXRQChr04g0126441 Helianthus annuus HOM05D004177 ORTHO05D004826 5.4e-39 166.0 100 84.0
HanXRQChr13g0409461 Helianthus annuus HOM05D004177 ORTHO05D004826 1.2e-38 164.9 124 71.8
Hund18419 Selenicereus undatus HOM05D004177 ORTHO05D004826 1.1e-36 158.3 113 66.4
Actinidia03786 Actinidia chinensis HOM05D004177 ORTHO05D004826 5.6e-36 156.0 99 80.8
HPP92_016662 Vanilla planifolia HOM05D004177 ORTHO05D004826 4.7e-35 152.9 98 74.5
C02p02540 Brassica napus HOM05D001260 ORTHO05D002424 8.9e-34 148.7 127 59.1
HPP92_016663 Vanilla planifolia HOM05D004177 ORTHO05D004826 1.2e-33 148.3 123 61.8
Aa31sc206G30 Aethionema arabicum HOM05D005780 ORTHO05D004826 3.3e-28 130.2 123 56.9
RcHm_v2.0_Chr6g0296851 Rosa chinensis HOM05D004177 ORTHO05D004826 6.0e-22 109.4 68 75.0
Actinidia39745 Actinidia chinensis HOM05D004177 ORTHO05D004826 1.7e-21 107.8 69 71.0
Oeu056107.1 Olea europaea HOM05D004177 ORTHO05D004826 1.7e-21 107.8 75 70.7
Oeu039826.4 Olea europaea HOM05D002851 ORTHO05D003084 2.5e-20 104.0 71 74.6
CDE02G3953 Ceratophyllum demersum HOM05D004177 ORTHO05D004826 3.2e-15 87.0 71 53.5
Peaxi162Scf00287g00176 Petunia axillaris HOM05D004177 ORTHO05D004826 5.4e-15 86.3 84 56.0
AUR62030112 Chenopodium quinoa HOM05D004177 ORTHO05D004826 5.1e-13 79.7 56 67.9
HanXRQChr13g0409471 Helianthus annuus HOM05D004177 ORTHO05D004826 2.1e-11 74.3 80 51.2
Pp3c1_32420 Physcomitrium patens HOM05D004177 ORTHO05D004826 4.0e-10 70.1 49 59.2
Nn4g24830 Nelumbo nucifera HOM05D004177 ORTHO05D004826 2.6e-09 67.4 124 41.9
Medtr8g079080 Medicago truncatula HOM05D004177 ORTHO05D004826 7.1e-07 59.3 46 63.0
VMungo0647G1164 Vigna mungo HOM05D004177 ORTHO05D004826 1.6e-06 58.2 58 53.4


User provided reference genes

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