Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0782G239 Amborella trichopoda HOM05D004737 ORTHO05D005623 5.3e-93 344.4 175 100.0
HPP92_015901 Vanilla planifolia HOM05D004737 ORTHO05D005623 3.2e-58 228.8 170 64.1
Nn5g30495 Nelumbo nucifera HOM05D004737 ORTHO05D005623 1.0e-56 223.8 174 65.5
TAR625G0056 Trochodendron aralioides HOM05D004737 ORTHO05D005623 3.0e-56 222.2 166 65.7
MSTRG.25602 Avicennia marina HOM05D004737 ORTHO05D005623 8.8e-56 220.7 172 62.8
QL12p034121 Quercus lobata HOM05D000005 ORTHO05D000833 4.4e-55 218.4 176 62.5
QL12p034148 Quercus lobata HOM05D004737 ORTHO05D005623 4.4e-55 218.4 171 63.7
Hma1.2p1_0896F.1_g233940 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 9.8e-55 217.2 171 61.4
QL12p033263 Quercus lobata HOM05D004737 ORTHO05D005623 9.8e-55 217.2 171 63.7
QL12p034065 Quercus lobata HOM05D004737 ORTHO05D005623 9.8e-55 217.2 171 63.7
MD14G1103600 Malus domestica HOM05D004737 ORTHO05D005623 1.7e-54 216.5 167 63.5
CDE04G2100 Ceratophyllum demersum HOM05D004737 ORTHO05D005623 2.8e-54 215.7 166 60.2
Potri.001G104800 Populus trichocarpa HOM05D004737 ORTHO05D005623 1.4e-53 213.4 171 60.8
GSVIVG01019762001 Vitis vinifera HOM05D004737 ORTHO05D005623 1.4e-53 213.4 168 62.5
Dinv38949 Davidia involucrata HOM05D004737 ORTHO05D005623 2.4e-53 212.6 171 60.8
EL10Ac6g13984 Beta vulgaris HOM05D004737 ORTHO05D005623 7.0e-53 211.1 169 62.1
vmacro11322 Vaccinium macrocarpon HOM05D004737 ORTHO05D005623 9.1e-53 210.7 165 63.0
Lj8A232T63 Lonicera japonica HOM05D004737 ORTHO05D005623 1.2e-52 210.3 171 61.4
Cc08_g14650 Coffea canephora HOM05D004737 ORTHO05D005623 2.7e-52 209.1 164 61.0
Gohir.D08G200800 Gossypium hirsutum HOM05D004737 ORTHO05D005623 5.9e-52 208.0 163 63.2
Gorai.004G211600 Gossypium raimondii HOM05D004737 ORTHO05D005623 5.9e-52 208.0 163 63.2
Prupe.5G098900 Prunus persica HOM05D004737 ORTHO05D005623 5.9e-52 208.0 167 61.1
Gohir.A08G182200 Gossypium hirsutum HOM05D004737 ORTHO05D005623 1.3e-51 206.8 163 63.8
Eucgr.E00582 Eucalyptus grandis HOM05D004737 ORTHO05D005623 1.7e-51 206.5 171 58.5
Duzib084G0936 Durio zibethinus HOM05D004737 ORTHO05D005623 2.2e-51 206.1 166 61.4
SGA_v2.0_scaffold253G45138 Striga asiatica HOM05D004737 ORTHO05D005623 2.9e-51 205.7 165 60.6
Manes.02G022400 Manihot esculenta HOM05D004737 ORTHO05D005623 5.0e-51 204.9 166 60.8
Rhsim02G0228600 Rhododendron simsii HOM05D004737 ORTHO05D005623 1.1e-50 203.8 165 58.8
SalBow5G1266 Salvia bowleyana HOM05D004737 ORTHO05D005623 1.1e-50 203.8 173 55.5
RcHm_v2.0_Chr7g0197851 Rosa chinensis HOM05D004737 ORTHO05D005623 1.9e-50 203.0 173 59.0
AUR62017215 Chenopodium quinoa HOM05D004737 ORTHO05D005623 9.4e-50 200.7 164 59.8
Haze_08850 Corylus avellana HOM05D004737 ORTHO05D005623 9.4e-50 200.7 155 64.5
Haze_08864 Corylus avellana HOM05D004737 ORTHO05D005623 9.4e-50 200.7 155 64.5
TWI38G1747 Tripterygium wilfordii HOM05D004737 ORTHO05D005623 9.4e-50 200.7 162 61.1
MELO3C005669.2 Cucumis melo HOM05D004737 ORTHO05D005623 1.2e-49 200.3 169 56.8
PGR042G1084 Punica granatum HOM05D004737 ORTHO05D005623 2.7e-49 199.1 166 56.6
CiPaw.11G135900 Carya illinoinensis HOM05D004737 ORTHO05D005623 3.6e-49 198.7 167 61.1
Nitab4.5_0010794g0020 Nicotiana tabacum HOM05D004737 ORTHO05D005623 3.6e-49 198.7 173 59.5
Nitab4.5_0001215g0220 Nicotiana tabacum HOM05D004737 ORTHO05D005623 4.7e-49 198.4 163 60.7
CsaV3_5G002870 Cucumis sativus L. HOM05D004737 ORTHO05D005623 1.0e-48 197.2 169 55.6
ECA246G0717 Erigeron canadensis HOM05D004737 ORTHO05D005623 1.4e-48 196.8 171 59.6
Sed0019193 Sechium edule HOM05D004737 ORTHO05D005623 1.4e-48 196.8 163 59.5
AUR62010668 Chenopodium quinoa HOM05D004737 ORTHO05D005623 2.3e-48 196.1 164 59.1
CSS0013453 Camellia sinensis var. sinensis HOM05D004737 ORTHO05D005623 4.0e-48 195.3 166 57.8
Aqoxy6G02772 Aquilegia oxysepala HOM05D004737 ORTHO05D005623 6.8e-48 194.5 164 61.6
Sabra01G0079500 Salix brachista HOM05D004737 ORTHO05D005623 8.8e-48 194.1 206 51.0
VMungo1215G1017 Vigna mungo HOM05D004737 ORTHO05D005623 2.6e-47 192.6 172 59.9
COL.COLO4_34453 Corchorus olitorius HOM05D004737 ORTHO05D005623 5.7e-47 191.4 166 56.0
Lsat_1_v5_gn_3_7380 Lactuca sativa HOM05D004737 ORTHO05D005623 7.5e-47 191.0 171 55.6
Os01g0764700 Oryza sativa ssp. japonica HOM05D004737 ORTHO05D005623 7.5e-47 191.0 170 57.1
Lj2g0011086 Lotus japonicus HOM05D004737 ORTHO05D005623 9.8e-47 190.7 167 57.5
Ah.02g116610 Amaranthus hybridus HOM05D000756 ORTHO05D000604 2.8e-46 189.1 156 60.3
Thecc.03G277700 Theobroma cacao HOM05D004737 ORTHO05D005623 2.8e-46 189.1 182 53.3
PGSC0003DMG400031232 Solanum tuberosum HOM05D004737 ORTHO05D005623 3.7e-46 188.7 163 59.5
Solyc10g074990.2 Solanum lycopersicum HOM05D004737 ORTHO05D005623 6.3e-46 188.0 163 58.9
Hma1.2p1_0896F.1_g233950 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 8.3e-46 187.6 171 55.6
Sopen10g027480 Solanum pennellii HOM05D004737 ORTHO05D005623 1.1e-45 187.2 163 58.9
Phvul.002G157400 Phaseolus vulgaris HOM05D004737 ORTHO05D005623 1.8e-45 186.4 173 59.0
ClCG01G002790 Citrullus lanatus HOM05D004737 ORTHO05D005623 3.1e-45 185.7 155 58.1
DCAR_008401 Daucus carota HOM05D004737 ORTHO05D005623 4.1e-45 185.3 155 59.4
CANSAT21G0205 Cannabis sativa HOM05D004737 ORTHO05D005623 7.0e-45 184.5 166 56.6
A04p06580 Brassica napus HOM05D004737 ORTHO05D005623 1.2e-44 183.7 171 55.0
BraA04t16363Z Brassica rapa HOM05D004737 ORTHO05D005623 1.2e-44 183.7 171 55.0
CAN.G1149.8 Capsicum annuum HOM05D004737 ORTHO05D005623 1.6e-44 183.3 163 57.1
HanXRQChr06g0165541 Helianthus annuus HOM05D004737 ORTHO05D005623 1.6e-44 183.3 171 53.8
BraA07t29816Z Brassica rapa HOM05D004737 ORTHO05D005623 2.0e-44 183.0 172 55.8
Atru.chr2.2103 Acer truncatum HOM05D004737 ORTHO05D005623 2.7e-44 182.6 166 57.8
BcaC02g09203 Brassica carinata HOM05D004737 ORTHO05D005623 2.7e-44 182.6 171 54.4
C04p40020 Brassica napus HOM05D004737 ORTHO05D005623 2.7e-44 182.6 171 54.4
BolC4t25575H Brassica oleracea HOM05D004737 ORTHO05D005623 2.7e-44 182.6 171 54.4
AT3G52905 Arabidopsis thaliana HOM05D004737 ORTHO05D005623 4.5e-44 181.8 171 54.4
A07p21280 Brassica napus HOM05D004737 ORTHO05D005623 4.5e-44 181.8 164 57.9
CARHR162770 Cardamine hirsuta HOM05D004737 ORTHO05D005623 4.5e-44 181.8 171 55.6
Sp5g09430 Schrenkiella parvula HOM05D004737 ORTHO05D005623 4.5e-44 181.8 171 55.0
Peaxi162Scf00198g00034 Petunia axillaris HOM05D004737 ORTHO05D005623 5.9e-44 181.4 177 54.2
AL5G33690 Arabidopsis lyrata HOM05D004737 ORTHO05D005623 7.7e-44 181.0 171 53.8
arahy.Tifrunner.gnm1.ann1.1HA888 Arachis hypogaea HOM05D004737 ORTHO05D005623 1.0e-43 180.6 168 58.3
TPR.G6698 Trifolium pratense HOM05D004737 ORTHO05D005623 1.3e-43 180.3 167 52.7
Carub.0005s1938 Capsella rubella HOM05D004737 ORTHO05D005623 2.3e-43 179.5 171 55.0
Ciclev10006013m.g Citrus clementina HOM05D004737 ORTHO05D005623 2.9e-43 179.1 155 57.4
Thhalv10010768m.g Eutrema salsugineum HOM05D004737 ORTHO05D005623 2.9e-43 179.1 171 54.4
THA.LOC104805035 Tarenaya hassleriana HOM05D004737 ORTHO05D005623 2.9e-43 179.1 170 52.9
BcaB02g08548 Brassica carinata HOM05D004737 ORTHO05D005623 3.8e-43 178.7 172 54.7
BcaC08g44605 Brassica carinata HOM05D004737 ORTHO05D005623 1.1e-42 177.2 174 54.0
SGA_v2.0_scaffold96G28950 Striga asiatica HOM05D004737 ORTHO05D005623 1.9e-42 176.4 164 54.9
C06p20780 Brassica napus HOM05D004737 ORTHO05D005623 2.5e-42 176.0 174 54.0
BolC6t37261H Brassica oleracea HOM05D004737 ORTHO05D005623 2.5e-42 176.0 174 54.0
FvH4_5g02300 Fragaria vesca HOM05D004737 ORTHO05D005623 5.6e-42 174.9 171 52.6
SHI07123 Sapria himalayana HOM05D004737 ORTHO05D005623 7.2e-42 174.5 166 53.6
Glyma.01G219700 Glycine max HOM05D004737 ORTHO05D005623 3.6e-41 172.2 172 54.1
Lalb_Chr09g0321031 Lupinus albus HOM05D004737 ORTHO05D005623 1.5e-39 166.8 155 55.5
unitig_88.g27612 Utricularia gibba HOM05D004737 ORTHO05D005623 4.4e-39 165.2 169 51.5
Aa31LG10G7820 Aethionema arabicum HOM05D004737 ORTHO05D005623 6.4e-38 161.4 172 48.8
arahy.Tifrunner.gnm1.ann1.4Y2W44 Arachis hypogaea HOM05D004737 ORTHO05D005623 8.3e-38 161.0 152 58.6
Actinidia14554 Actinidia chinensis HOM05D004737 ORTHO05D005623 3.5e-36 155.6 121 64.5
Sc07g0009740 Simmondsia chinensis HOM05D004737 ORTHO05D005623 2.5e-34 149.4 125 60.0
Migut.A00772 Erythranthe guttata HOM05D004737 ORTHO05D005623 9.5e-34 147.5 121 62.0
ECA246G4230 Erigeron canadensis HOM05D004737 ORTHO05D005623 6.2e-33 144.8 173 39.9
AagrBONN_evm.TU.Sc2ySwM_362.2040 Anthoceros agrestis HOM05D004737 ORTHO05D005623 1.5e-31 140.2 163 46.0
PSO675G2933 Papaver somniferum HOM05D004737 ORTHO05D005623 9.8e-31 137.5 189 40.7
PSO541G1514 Papaver somniferum HOM05D004737 ORTHO05D005623 1.7e-30 136.7 189 41.3
Pp3c24_17350 Physcomitrium patens HOM05D004737 ORTHO05D005623 4.1e-29 132.1 155 45.2
SEGI_05186 Sequoiadendron giganteum HOM05D004737 ORTHO05D005623 9.2e-29 131.0 116 54.3
Psat0s3411g0080 Pisum sativum HOM05D004737 ORTHO05D005623 2.0e-28 129.8 123 53.7
CBR_g78868 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-27 127.1 138 47.8
Atru.chr11.10 Acer truncatum HOM05D004737 ORTHO05D005623 3.0e-27 125.9 166 40.4
Mapoly0022s0110 Marchantia polymorpha HOM05D004737 ORTHO05D005623 2.5e-26 122.9 159 44.0
Atru.chr6.144 Acer truncatum HOM05D004737 ORTHO05D005623 8.1e-25 117.9 177 38.4
BcaB02g07803 Brassica carinata HOM05D004737 ORTHO05D005623 1.8e-24 116.7 110 53.6
Atru.chr6.77 Acer truncatum HOM05D004737 ORTHO05D005623 2.3e-24 116.3 177 38.4
Atru.chr2.774 Acer truncatum HOM05D004737 ORTHO05D005623 4.0e-24 115.5 182 33.5
Atru.chr6.169 Acer truncatum HOM05D004737 ORTHO05D005623 7.5e-23 111.3 169 37.9
Atru.chr5.3476 Acer truncatum HOM05D004737 ORTHO05D005623 1.3e-22 110.5 175 41.1
Atru.chr1.4031 Acer truncatum HOM05D004737 ORTHO05D005623 9.2e-21 104.4 174 35.1
Atru.chr13.1520 Acer truncatum HOM05D004737 ORTHO05D005623 9.2e-21 104.4 200 33.5
Eucgr.E00580 Eucalyptus grandis HOM05D004737 ORTHO05D005623 1.2e-20 104.0 75 58.7
Zm00001eb152210 Zea mays HOM05D004737 ORTHO05D005623 1.2e-20 104.0 108 54.6
Atru.chr1.3074 Acer truncatum HOM05D004737 ORTHO05D005623 7.8e-20 101.3 177 34.5
Atru.chr1.3075 Acer truncatum HOM05D004737 ORTHO05D005623 1.0e-19 100.9 183 32.2
Atru.chr1.4028 Acer truncatum HOM05D004737 ORTHO05D005623 3.3e-18 95.9 165 37.0
Cpa.g.sc128.49 Carica papaya HOM05D004737 ORTHO05D005623 1.6e-17 93.6 72 63.9
Atru.chr1.3076 Acer truncatum HOM05D005378 ORTHO05D006986 1.1e-16 90.9 175 33.1
ECA240G3910 Erigeron canadensis HOM05D004737 ORTHO05D005623 2.3e-16 89.7 166 34.3
Atru.chr2.781 Acer truncatum HOM05D004737 ORTHO05D005623 1.2e-15 87.4 165 31.5
Atru.chr11.9 Acer truncatum HOM05D004737 ORTHO05D005623 4.4e-15 85.5 170 33.5
Atru.chr13.1180 Acer truncatum HOM05D004737 ORTHO05D005623 7.6e-15 84.7 169 33.1
Glyma.11G023800 Glycine max HOM05D004737 ORTHO05D005623 7.6e-15 84.7 113 46.0
Psat2g182280 Pisum sativum HOM05D004737 ORTHO05D005623 9.9e-15 84.3 76 55.3
Atru.chr4.898 Acer truncatum HOM05D004737 ORTHO05D005623 2.2e-14 83.2 175 30.9
ECA248G3864 Erigeron canadensis HOM05D004737 ORTHO05D005623 1.4e-13 80.5 155 31.6
Atru.chr4.1971 Acer truncatum HOM05D004737 ORTHO05D005623 1.9e-13 80.1 167 31.7
Atru.chr12.1179 Acer truncatum HOM05D004737 ORTHO05D005623 1.6e-12 77.0 173 32.9
ECA240G0629 Erigeron canadensis HOM05D004737 ORTHO05D005623 2.1e-12 76.6 110 40.0
Atru.chr4.1970 Acer truncatum HOM05D004737 ORTHO05D005623 6.0e-12 75.1 167 30.5
Atru.chr6.95 Acer truncatum HOM05D004737 ORTHO05D005623 6.0e-12 75.1 111 39.6
FAN04G3051 Fragaria x ananassa HOM05D004737 ORTHO05D005623 3.9e-11 72.4 71 54.9
Atru.chr2.779 Acer truncatum HOM05D004737 ORTHO05D005623 5.1e-11 72.0 180 28.3
QL12p033469 Quercus lobata HOM05D004737 ORTHO05D005623 1.1e-10 70.9 46 71.7
Atru.chr12.1688 Acer truncatum HOM05D004737 ORTHO05D005623 1.5e-10 70.5 132 31.8
Atru.chr1.4012 Acer truncatum HOM05D004737 ORTHO05D005623 5.6e-10 68.6 184 25.5
Atru.chr7.1970 Acer truncatum HOM05D004737 ORTHO05D005623 5.6e-10 68.6 146 31.5
Atru.chr12.1177 Acer truncatum HOM05D004737 ORTHO05D005623 3.6e-09 65.9 167 27.5
Atru.chr4.1967 Acer truncatum HOM05D004737 ORTHO05D005623 4.7e-09 65.5 112 39.3
Atru.chr7.1971 Acer truncatum HOM05D004737 ORTHO05D005623 1.4e-08 63.9 187 29.4
Atru.chr8.895 Acer truncatum HOM05D004737 ORTHO05D005623 1.2e-07 60.8 171 23.4
Atru.chr5.3478 Acer truncatum HOM05D004737 ORTHO05D005623 2.0e-07 60.1 128 28.9


User provided reference genes

Program Settings