Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0782G063 Amborella trichopoda HOM05D002214 ORTHO05D007367 4.2e-253 877.5 421 100.0
Actinidia19424 Actinidia chinensis HOM05D002214 ORTHO05D007367 9.0e-123 444.5 409 54.8
Aqoxy2G00221 Aquilegia oxysepala HOM05D002214 ORTHO05D007367 6.5e-121 438.3 412 53.4
CiPaw.14G003400 Carya illinoinensis HOM05D002214 ORTHO05D007367 1.2e-119 434.1 418 52.4
Duzib138G1340 Durio zibethinus HOM05D002214 ORTHO05D007367 3.6e-119 432.6 419 54.2
GSVIVG01032215001 Vitis vinifera HOM05D002214 ORTHO05D007367 4.6e-119 432.2 422 50.7
Cfa010812 Carpinus fangiana HOM05D002214 ORTHO05D007367 1.0e-118 431.0 420 51.2
Potri.009G056500 Populus trichocarpa HOM05D002214 ORTHO05D007367 1.0e-118 431.0 408 53.7
Thecc.01G406200 Theobroma cacao HOM05D002214 ORTHO05D007367 3.9e-118 429.1 425 52.9
Nn7g36334 Nelumbo nucifera HOM05D002214 ORTHO05D007367 1.1e-117 427.6 409 52.6
Rhsim07G0058900 Rhododendron simsii HOM05D002214 ORTHO05D007367 2.5e-117 426.4 409 52.8
TWI09G0406 Tripterygium wilfordii HOM05D002214 ORTHO05D007367 1.3e-116 424.1 408 52.9
Eucgr.G03301 Eucalyptus grandis HOM05D002214 ORTHO05D007367 2.8e-116 422.9 409 51.1
FAN10G2270 Fragaria x ananassa HOM05D002214 ORTHO05D007367 4.8e-116 422.2 436 50.0
RcHm_v2.0_Chr1g0318361 Rosa chinensis HOM05D002214 ORTHO05D007367 6.3e-116 421.8 416 51.0
Gorai.004G170100 Gossypium raimondii HOM05D002214 ORTHO05D007367 2.4e-115 419.9 424 52.6
Sc11g0009040 Simmondsia chinensis HOM05D002214 ORTHO05D007367 4.1e-115 419.1 409 51.6
Gohir.A08G142300 Gossypium hirsutum HOM05D002214 ORTHO05D007367 6.9e-115 418.3 424 52.6
Eucgr.G03320 Eucalyptus grandis HOM05D002214 ORTHO05D007367 1.2e-114 417.5 409 50.9
FAN03G2729 Fragaria x ananassa HOM05D002214 ORTHO05D007367 1.5e-114 417.2 416 50.7
Ciclev10031605m.g Citrus clementina HOM05D002214 ORTHO05D007367 2.9e-113 412.9 407 50.6
Hma1.2p1_0685F.1_g203260 Hydrangea macrophylla HOM05D002214 ORTHO05D007367 2.9e-113 412.9 410 50.5
CANSAT80G0536 Cannabis sativa HOM05D002214 ORTHO05D007367 1.4e-112 410.6 413 50.8
Manes.07G010800 Manihot esculenta HOM05D002214 ORTHO05D007367 1.9e-112 410.2 409 51.8
AUR62023095 Chenopodium quinoa HOM05D002214 ORTHO05D007367 2.3e-110 403.3 417 49.6
THA.LOC104817574 Tarenaya hassleriana HOM05D002214 ORTHO05D007367 1.1e-109 401.0 415 49.9
vmacro13697 Vaccinium macrocarpon HOM05D002214 ORTHO05D007367 1.7e-108 397.1 462 48.1
Lalb_Chr25g0282551 Lupinus albus HOM05D002214 ORTHO05D007367 2.2e-108 396.7 414 49.5
Sed0008197 Sechium edule HOM05D002214 ORTHO05D007367 2.2e-108 396.7 408 50.5
VMungo1217G0001 Vigna mungo HOM05D002214 ORTHO05D007367 8.2e-108 394.8 420 47.6
Ca_24837_v3 Cicer arietinum L. HOM05D002214 ORTHO05D007367 1.1e-107 394.4 418 49.5
PSO339G3363 Papaver somniferum HOM05D002214 ORTHO05D007367 2.4e-107 393.3 422 49.5
Phvul.005G035100 Phaseolus vulgaris HOM05D002214 ORTHO05D007367 3.1e-107 392.9 419 48.2
Glyma.11G159230 Glycine max HOM05D002214 ORTHO05D007367 1.2e-106 391.0 407 48.4
Psat5g212440 Pisum sativum HOM05D002214 ORTHO05D007367 1.2e-106 391.0 404 49.0
CsaV3_7G030710 Cucumis sativus L. HOM05D002214 ORTHO05D007367 2.0e-106 390.2 414 48.8
Sp5g10260 Schrenkiella parvula HOM05D002214 ORTHO05D007367 2.6e-106 389.8 414 50.0
A03p48610 Brassica napus HOM05D002214 ORTHO05D007367 3.4e-106 389.4 418 48.3
PSO384G3385 Papaver somniferum HOM05D002214 ORTHO05D007367 4.5e-106 389.0 422 49.1
Prupe.2G024000 Prunus persica HOM05D002214 ORTHO05D007367 4.5e-106 389.0 418 50.5
SGA_v2.0_scaffold5G02954 Striga asiatica HOM05D002214 ORTHO05D007367 4.5e-106 389.0 416 47.6
Medtr3g034210 Medicago truncatula HOM05D002214 ORTHO05D007367 5.9e-106 388.7 410 48.3
BcaC06g33020 Brassica carinata HOM05D002214 ORTHO05D007367 1.0e-105 387.9 424 47.4
DCAR_022375 Daucus carota HOM05D002214 ORTHO05D007367 1.0e-105 387.9 406 50.2
MD07G1023200 Malus domestica HOM05D002214 ORTHO05D007367 1.0e-105 387.9 417 49.4
Sopen01g034840 Solanum pennellii HOM05D002214 ORTHO05D007367 2.9e-105 386.3 410 50.2
arahy.Tifrunner.gnm1.ann1.IP56PK Arachis hypogaea HOM05D002214 ORTHO05D007367 3.8e-105 386.0 412 47.8
TAR633G1256 Trochodendron aralioides HOM05D002214 ORTHO05D007367 3.8e-105 386.0 372 52.7
Solyc01g087910.4 Solanum lycopersicum HOM05D002214 ORTHO05D007367 5.0e-105 385.6 410 50.5
Carub.0005s1835 Capsella rubella HOM05D002214 ORTHO05D007367 1.4e-104 384.0 415 47.5
TPR.G14558 Trifolium pratense HOM05D002214 ORTHO05D007367 1.4e-104 384.0 409 46.9
QL04p010195 Quercus lobata HOM05D002214 ORTHO05D007367 3.2e-104 382.9 422 47.9
arahy.Tifrunner.gnm1.ann1.KRTV89 Arachis hypogaea HOM05D002214 ORTHO05D007367 4.2e-104 382.5 412 47.6
CAN.G909.6 Capsicum annuum HOM05D002214 ORTHO05D007367 4.2e-104 382.5 411 50.1
Thhalv10010397m.g Eutrema salsugineum HOM05D002214 ORTHO05D007367 5.5e-104 382.1 415 48.0
BcaC06g33377 Brassica carinata HOM05D002214 ORTHO05D007367 1.2e-103 380.9 418 47.1
C07p46730 Brassica napus HOM05D002214 ORTHO05D007367 1.6e-103 380.6 418 46.9
CARHR161660 Cardamine hirsuta HOM05D002214 ORTHO05D007367 1.0e-102 377.9 416 46.4
Lj3g0007976 Lotus japonicus HOM05D002214 ORTHO05D007367 1.8e-102 377.1 411 47.2
Lsat_1_v5_gn_7_35840 Lactuca sativa HOM05D002214 ORTHO05D007367 3.9e-102 375.9 407 45.9
AT3G52030 Arabidopsis thaliana HOM05D002214 ORTHO05D007367 6.7e-102 375.2 416 46.9
AL5G32570 Arabidopsis lyrata HOM05D002214 ORTHO05D007367 2.0e-101 373.6 431 45.9
Atru.chr11.2515 Acer truncatum HOM05D002214 ORTHO05D007367 4.4e-101 372.5 407 47.7
Migut.N01800 Erythranthe guttata HOM05D002214 ORTHO05D007367 4.8e-100 369.0 439 46.5
BolC7t45191H Brassica oleracea HOM05D002214 ORTHO05D007367 1.8e-99 367.1 435 44.8
PGR031G3638 Punica granatum HOM05D002214 ORTHO05D007367 4.1e-99 365.9 448 43.5
Os11g0182400 Oryza sativa ssp. japonica HOM05D002214 ORTHO05D007367 4.5e-98 362.5 404 46.8
Gohir.D08G163300 Gossypium hirsutum HOM05D002214 ORTHO05D007367 2.2e-97 360.1 313 58.8
Nitab4.5_0001244g0060 Nicotiana tabacum HOM05D002214 ORTHO05D007367 3.8e-97 359.4 406 48.0
MBI03_g28525_MAGBIO Magnolia biondii HOM05D002214 ORTHO05D007367 5.0e-97 359.0 412 49.0
Cc02_g28820 Coffea canephora HOM05D002214 ORTHO05D007367 6.5e-97 358.6 516 39.3
unitig_22.g5896 Utricularia gibba HOM05D002214 ORTHO05D007367 2.5e-96 356.7 421 45.4
HPP92_021380 Vanilla planifolia HOM05D002214 ORTHO05D007367 5.5e-96 355.5 414 44.9
BraA03t13966Z Brassica rapa HOM05D002214 ORTHO05D007367 3.6e-95 352.8 420 45.5
CSS0000146 Camellia sinensis var. sinensis HOM05D002214 ORTHO05D007367 1.0e-94 351.3 411 47.4
Zm00001eb091260 Zea mays HOM05D002214 ORTHO05D007367 5.2e-94 349.0 407 45.5
ECA236G0637 Erigeron canadensis HOM05D002214 ORTHO05D001664 1.5e-93 347.4 393 45.5
FvH4_7g01770 Fragaria vesca HOM05D002214 ORTHO05D007367 2.4e-91 340.1 309 53.4
Peaxi162Scf01270g00126 Petunia axillaris HOM05D002214 ORTHO05D007367 1.6e-90 337.4 421 46.1
Ah.16g100650 Amaranthus hybridus HOM05D002214 ORTHO05D007367 2.5e-88 330.1 344 48.5
Dinv07431 Davidia involucrata HOM05D002214 ORTHO05D005113 2.8e-84 316.6 308 51.9
ClCG09G004430 Citrullus lanatus HOM05D002214 ORTHO05D007367 7.0e-83 312.0 378 45.2
QL04p010150 Quercus lobata HOM05D002214 ORTHO05D007367 1.2e-82 311.2 359 46.2
EL10Ac2g04369 Beta vulgaris HOM05D002214 ORTHO05D007367 1.5e-80 304.3 416 41.1
Nitab4.5_0008942g0050 Nicotiana tabacum HOM05D002214 ORTHO05D007367 2.0e-77 293.9 408 43.9
Oeu051405.1 Olea europaea HOM05D002214 ORTHO05D007367 1.6e-74 284.3 290 50.7
QL04p010068 Quercus lobata HOM05D002214 ORTHO05D007367 4.4e-69 266.2 259 52.1
FAN24G1013 Fragaria x ananassa HOM05D002214 ORTHO05D007367 8.3e-68 261.9 447 38.0
FvH4_2g17890 Fragaria vesca HOM05D002214 ORTHO05D007367 3.2e-67 260.0 445 37.8
FAN24G2408 Fragaria x ananassa HOM05D002214 ORTHO05D007367 4.1e-67 259.6 436 37.8
HanXRQChr04g0119861 Helianthus annuus HOM05D002214 ORTHO05D007367 9.2e-67 258.5 262 47.3
AUR62009418 Chenopodium quinoa HOM05D002214 ORTHO05D007367 1.9e-64 250.8 416 37.0
FAN15G3441 Fragaria x ananassa HOM05D002214 ORTHO05D007367 3.6e-63 246.5 445 36.9
AagrBONN_evm.TU.Sc2ySwM_344.2511 Anthoceros agrestis HOM05D002214 ORTHO05D007367 2.0e-61 240.7 452 33.8
SalBow6G2835 Salvia bowleyana HOM05D002214 ORTHO05D007367 2.0e-61 240.7 291 46.0
FAN06G2164 Fragaria x ananassa HOM05D002214 ORTHO05D007367 2.4e-59 233.8 241 50.2
Haze_03152 Corylus avellana HOM05D002214 ORTHO05D007367 1.0e-57 228.4 406 35.7
MELO3C023585.2 Cucumis melo HOM05D002214 ORTHO05D007367 2.3e-57 227.3 408 35.3
Haze_03149 Corylus avellana HOM05D002214 ORTHO05D007367 5.1e-57 226.1 406 35.5
FAN27G1816 Fragaria x ananassa HOM05D002214 ORTHO05D007367 3.3e-56 223.4 445 34.2
FAN27G1164 Fragaria x ananassa HOM05D002214 ORTHO05D007367 4.7e-55 219.5 412 36.7
QL04p010120 Quercus lobata HOM05D002214 ORTHO05D007367 4.1e-51 206.5 204 52.5
RcHm_v2.0_Chr6g0283161 Rosa chinensis HOM05D002214 ORTHO05D007367 3.0e-49 200.3 307 41.4
Aa31LG10G14890 Aethionema arabicum HOM05D002214 ORTHO05D007367 4.3e-48 196.4 230 44.8
Pp3c8_19810 Physcomitrium patens HOM05D002214 ORTHO05D007367 1.2e-47 194.9 407 29.7
Cpa.g.sc125.50 Carica papaya HOM05D002214 ORTHO05D007367 4.2e-43 179.9 196 46.4
CDE04G0429 Ceratophyllum demersum HOM05D002214 ORTHO05D007367 4.6e-42 176.4 190 48.4
SEGI_30351 Sequoiadendron giganteum HOM05D002214 ORTHO05D007367 1.3e-41 174.9 139 61.2
Cpa.g.sc125.51 Carica papaya HOM05D002214 ORTHO05D007367 9.6e-40 168.7 238 39.9
SMO137G0282 Selaginella moellendorffii HOM05D002214 ORTHO05D007367 4.7e-39 166.4 345 32.5
Mapoly0009s0234 Marchantia polymorpha HOM05D002214 ORTHO05D007367 3.4e-37 160.2 305 34.1
COL.COLO4_12334 Corchorus olitorius HOM05D000031 ORTHO05D000030 1.1e-35 155.2 337 32.0
Hund16633 Selenicereus undatus HOM05D002214 ORTHO05D007367 3.2e-35 153.7 148 53.4
Hund16632 Selenicereus undatus HOM05D002214 ORTHO05D007367 1.9e-32 144.4 157 45.9
Hma1.2p1_0685F.1_g203270 Hydrangea macrophylla HOM05D002214 ORTHO05D007367 1.3e-31 141.7 149 49.0
Lj9A641T67 Lonicera japonica HOM05D002214 ORTHO05D007367 3.6e-31 140.2 285 32.6
CBR_g46897 Chara braunii HOM05D002214 ORTHO05D007367 5.3e-30 136.3 372 26.6
MD07G1016900 Malus domestica HOM05D002214 ORTHO05D007367 9.0e-30 135.6 221 39.8
FvH4_2g17910 Fragaria vesca HOM05D002214 ORTHO05D007367 1.7e-28 131.3 250 34.8
FAN24G3278 Fragaria x ananassa HOM05D002214 ORTHO05D007367 1.7e-28 131.3 250 34.8
SEGI_07097 Sequoiadendron giganteum HOM05D002214 ORTHO05D007367 2.7e-26 124.0 139 47.5
Thecc.01G405700 Theobroma cacao HOM05D002214 ORTHO05D007367 4.6e-26 123.2 104 51.9
FAN06G4994 Fragaria x ananassa HOM05D002214 ORTHO05D007367 2.5e-24 117.5 135 45.2
Thecc.01G405800 Theobroma cacao HOM05D002214 ORTHO05D007367 2.2e-20 104.4 81 65.4
Aa31LG10G14900 Aethionema arabicum HOM05D002214 ORTHO05D007367 1.2e-18 98.6 116 44.0
Oeu016638.1 Olea europaea HOM05D002214 ORTHO05D007367 4.8e-15 86.7 102 43.1
Duzib133G0745 Durio zibethinus HOM05D002214 ORTHO05D007367 1.1e-11 75.5 52 57.7
Hma1.2p1_0685F.1_g203250 Hydrangea macrophylla HOM05D002214 ORTHO05D007367 3.0e-09 67.4 99 39.4
Cfa002800 Carpinus fangiana HOM05D006430 ORTHO05D007585 1.4e-06 58.5 156 30.8
EL10Ac6g15234 Beta vulgaris HOM05D006430 ORTHO05D007585 2.4e-06 57.8 145 31.0
RcHm_v2.0_Chr2g0119791 Rosa chinensis HOM05D006430 ORTHO05D007585 2.4e-06 57.8 244 24.6
GSVIVG01008513001 Vitis vinifera HOM05D002332 ORTHO05D002509 2.4e-06 57.8 160 28.1
Cc07_g16870 Coffea canephora HOM05D006430 ORTHO05D007585 3.1e-06 57.4 156 28.8
MELO3C008023.2 Cucumis melo HOM05D006430 ORTHO05D007585 3.1e-06 57.4 143 30.1
Migut.L00052 Erythranthe guttata HOM05D006430 ORTHO05D007585 3.1e-06 57.4 156 28.2
HanXRQChr12g0378501 Helianthus annuus HOM05D000453 ORTHO05D000387 3.1e-06 57.4 140 29.3
Manes.14G052901 Manihot esculenta HOM05D002332 ORTHO05D002509 3.1e-06 57.4 165 26.7
unitig_37.g12838 Utricularia gibba HOM05D006430 ORTHO05D007585 4.1e-06 57.0 143 30.1
Hma1.2p1_0253F.1_g102940 Hydrangea macrophylla HOM05D006430 ORTHO05D007585 5.3e-06 56.6 157 30.6
Sabra16G0192700 Salix brachista HOM05D006430 ORTHO05D007585 5.3e-06 56.6 157 28.0
Sed0026374 Sechium edule HOM05D006430 ORTHO05D007585 5.3e-06 56.6 143 30.1
Medtr8g092620 Medicago truncatula HOM05D006430 ORTHO05D007585 6.9e-06 56.2 155 27.7
SGA_v2.0_scaffold47G17683 Striga asiatica HOM05D006430 ORTHO05D007585 6.9e-06 56.2 146 30.8
TPR.G2201 Trifolium pratense HOM05D006430 ORTHO05D007585 6.9e-06 56.2 156 27.6
CDE08G0124 Ceratophyllum demersum HOM05D006430 ORTHO05D007585 9.0e-06 55.8 143 28.7
Manes.12G148000 Manihot esculenta HOM05D006430 ORTHO05D007585 9.0e-06 55.8 156 28.2
QL08p047156 Quercus lobata HOM05D006430 ORTHO05D007585 9.0e-06 55.8 143 30.1
TWI79G0409 Tripterygium wilfordii HOM05D006430 ORTHO05D007585 9.0e-06 55.8 156 29.5


User provided reference genes

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