Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0767G266 Amborella trichopoda HOM05D004194 ORTHO05D005641 1.7e-296 1021.9 528 100.0
TAR625G0434 Trochodendron aralioides HOM05D004194 ORTHO05D005641 1.6e-230 802.7 462 83.3
TAR381G0874 Trochodendron aralioides HOM05D004194 ORTHO05D005641 4.0e-229 798.1 466 82.4
Nn5g29879 Nelumbo nucifera HOM05D004194 ORTHO05D005641 2.6e-228 795.4 464 83.2
QL09p017817 Quercus lobata HOM05D004194 ORTHO05D005641 3.4e-228 795.0 471 82.2
vmacro17477 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 9.9e-228 793.5 465 82.2
PSO170G4697 Papaver somniferum HOM05D004194 ORTHO05D005641 1.1e-226 790.0 465 81.7
Actinidia10274 Actinidia chinensis HOM05D004194 ORTHO05D005641 4.2e-226 788.1 473 81.0
Thecc.08G071000 Theobroma cacao HOM05D004194 ORTHO05D005641 4.2e-226 788.1 473 79.9
GSVIVG01009181001 Vitis vinifera HOM05D004194 ORTHO05D005641 4.2e-226 788.1 464 81.9
Cfa013797 Carpinus fangiana HOM05D004194 ORTHO05D005641 5.5e-226 787.7 471 80.7
vmacro21340 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 1.6e-225 786.2 461 82.2
PSO210G0577 Papaver somniferum HOM05D004194 ORTHO05D005641 2.7e-225 785.4 462 81.6
Solyc04g076320.4 Solanum lycopersicum HOM05D004194 ORTHO05D005641 6.0e-225 784.3 461 80.9
Haze_22460 Corylus avellana HOM05D004194 ORTHO05D005641 7.9e-225 783.9 471 80.3
Sopen04g030120 Solanum pennellii HOM05D004194 ORTHO05D005641 1.3e-224 783.1 461 81.1
AUR62004928 Chenopodium quinoa HOM05D004194 ORTHO05D005641 1.8e-224 782.7 465 81.3
CDE01G0047 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 3.9e-224 781.6 462 82.0
Gorai.002G139300 Gossypium raimondii HOM05D004194 ORTHO05D005641 6.7e-224 780.8 462 81.4
Hma1.2p1_0010F.1_g006650 Hydrangea macrophylla HOM05D004194 ORTHO05D005641 6.7e-224 780.8 459 81.7
AUR62001023 Chenopodium quinoa HOM05D004194 ORTHO05D005641 8.7e-224 780.4 465 80.6
Gohir.A01G126900 Gossypium hirsutum HOM05D004194 ORTHO05D005641 1.9e-223 779.2 462 81.2
CiPaw.07G165400 Carya illinoinensis HOM05D004194 ORTHO05D005641 2.5e-223 778.9 463 80.8
CDE02G0818 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 2.5e-223 778.9 462 81.8
CSS0028335 Camellia sinensis var. sinensis HOM05D004194 ORTHO05D005641 3.3e-223 778.5 472 80.3
Gohir.D01G114300 Gossypium hirsutum HOM05D004194 ORTHO05D005641 3.3e-223 778.5 462 81.0
Eucgr.F02151 Eucalyptus grandis HOM05D004194 ORTHO05D005641 5.6e-223 777.7 468 80.3
Manes.18G058500 Manihot esculenta HOM05D004194 ORTHO05D005641 5.6e-223 777.7 463 80.3
Medtr3g100220 Medicago truncatula HOM05D004194 ORTHO05D005641 5.6e-223 777.7 463 80.1
Cc10_g15890 Coffea canephora HOM05D004194 ORTHO05D005641 7.4e-223 777.3 461 81.6
Rhsim06G0071600 Rhododendron simsii HOM05D004194 ORTHO05D005641 7.4e-223 777.3 476 79.6
Aqoxy6G00868 Aquilegia oxysepala HOM05D004194 ORTHO05D005641 1.3e-222 776.5 462 81.6
Cpa.g.sc21.21 Carica papaya HOM05D004194 ORTHO05D005641 1.3e-222 776.5 462 80.3
PGSC0003DMG400009343 Solanum tuberosum HOM05D004194 ORTHO05D005641 1.6e-222 776.2 482 77.8
FvH4_5g34710 Fragaria vesca HOM05D004194 ORTHO05D005641 2.1e-222 775.8 460 81.5
Peaxi162Scf00454g00416 Petunia axillaris HOM05D004194 ORTHO05D005641 2.1e-222 775.8 465 80.6
Glyma.04G094600 Glycine max HOM05D004194 ORTHO05D005641 2.8e-222 775.4 464 80.2
Lalb_Chr11g0064971 Lupinus albus HOM05D004194 ORTHO05D005641 3.7e-222 775.0 462 80.1
Glyma.06G096700 Glycine max HOM05D004194 ORTHO05D005641 4.8e-222 774.6 465 80.0
Lj4A737T61 Lonicera japonica HOM05D004194 ORTHO05D005641 4.8e-222 774.6 463 80.8
Hund21605 Selenicereus undatus HOM05D004194 ORTHO05D005641 4.8e-222 774.6 461 80.5
PGR042G2811 Punica granatum HOM05D004194 ORTHO05D005641 6.2e-222 774.2 468 80.6
Duzib093G0846 Durio zibethinus HOM05D004194 ORTHO05D005641 8.2e-222 773.9 473 78.4
DCAR_012855 Daucus carota HOM05D004194 ORTHO05D005641 1.1e-221 773.5 459 81.9
Ca_23440_v3 Cicer arietinum L. HOM05D004194 ORTHO05D005641 1.4e-221 773.1 460 80.2
TWI12G1457 Tripterygium wilfordii HOM05D004194 ORTHO05D005641 1.4e-221 773.1 473 78.9
TPR.G6303 Trifolium pratense HOM05D004194 ORTHO05D005641 4.0e-221 771.5 460 79.8
EL10Ac4g09117 Beta vulgaris HOM05D004194 ORTHO05D005641 5.3e-221 771.2 461 80.5
VMungo1309G1669 Vigna mungo HOM05D004194 ORTHO05D005641 5.3e-221 771.2 459 80.2
RcHm_v2.0_Chr7g0216141 Rosa chinensis HOM05D004194 ORTHO05D005641 1.2e-220 770.0 465 80.0
ECA232G1743 Erigeron canadensis HOM05D004194 ORTHO05D005641 2.6e-220 768.8 467 79.7
Atru.chr13.1009 Acer truncatum HOM05D004194 ORTHO05D005641 4.5e-220 768.1 461 79.2
Lj1g0000709 Lotus japonicus HOM05D004194 ORTHO05D005641 4.5e-220 768.1 460 79.3
Hund09317 Selenicereus undatus HOM05D004194 ORTHO05D005641 5.8e-220 767.7 453 81.7
Phvul.002G296600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 1.0e-219 766.9 465 78.7
FAN13G1619 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.3e-219 766.5 464 80.4
CAN.G475.29 Capsicum annuum HOM05D004194 ORTHO05D005641 4.9e-219 764.6 461 78.7
MSTRG.28070 Avicennia marina HOM05D004194 ORTHO05D005641 1.9e-218 762.7 462 80.5
MELO3C003523.2 Cucumis melo HOM05D004194 ORTHO05D005641 3.2e-218 761.9 459 79.1
MBI16_g12466_MAGBIO Magnolia biondii HOM05D004194 ORTHO05D005641 3.2e-218 761.9 459 81.9
CsaV3_3G047990 Cucumis sativus L. HOM05D004194 ORTHO05D005641 4.2e-218 761.5 459 79.1
Prupe.1G532200 Prunus persica HOM05D004194 ORTHO05D005641 9.3e-218 760.4 464 80.2
FAN04G1572 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.6e-217 759.6 498 74.9
Sed0011017 Sechium edule HOM05D004194 ORTHO05D005641 2.1e-217 759.2 466 78.3
MD12G1008900 Malus domestica HOM05D004194 ORTHO05D005641 2.7e-217 758.8 461 80.0
Lsat_1_v5_gn_9_75040 Lactuca sativa HOM05D004194 ORTHO05D005641 3.5e-217 758.4 459 81.0
Potri.002G106200 Populus trichocarpa HOM05D004194 ORTHO05D005641 4.6e-217 758.1 468 77.6
Sed0019515 Sechium edule HOM05D004194 ORTHO05D005641 4.6e-217 758.1 504 73.2
CANSAT21G1481 Cannabis sativa HOM05D004194 ORTHO05D005641 7.9e-217 757.3 464 78.9
FAN08G1093 Fragaria x ananassa HOM05D004194 ORTHO05D005641 7.9e-217 757.3 498 74.9
Psat5g048920 Pisum sativum HOM05D004194 ORTHO05D005641 7.9e-217 757.3 463 77.8
ClCG08G011660 Citrullus lanatus HOM05D004194 ORTHO05D005641 1.8e-216 756.1 459 79.1
Ciclev10000871m.g Citrus clementina HOM05D004194 ORTHO05D005641 1.8e-216 756.1 461 79.0
FAN18G1922 Fragaria x ananassa HOM05D004194 ORTHO05D005641 2.3e-216 755.7 486 77.0
CsaV3_2G030250 Cucumis sativus L. HOM05D004194 ORTHO05D005641 3.0e-216 755.4 459 78.4
SalBow6G2182 Salvia bowleyana HOM05D004194 ORTHO05D005641 4.3e-215 751.5 462 78.8
arahy.Tifrunner.gnm1.ann1.S0XZCZ Arachis hypogaea HOM05D004194 ORTHO05D005641 2.2e-214 749.2 464 77.2
THA.LOC104799791 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 7.6e-212 740.7 459 76.3
CANSAT21G2248 Cannabis sativa HOM05D004194 ORTHO05D005641 1.7e-211 739.6 464 77.8
A10p26770 Brassica napus HOM05D004194 ORTHO05D005641 2.9e-211 738.8 459 76.7
SalBow8G0776 Salvia bowleyana HOM05D004194 ORTHO05D005641 2.9e-211 738.8 484 75.2
AT5G10920 Arabidopsis thaliana HOM05D004194 ORTHO05D005641 1.4e-210 736.5 459 76.9
Lsat_1_v5_gn_6_104960 Lactuca sativa HOM05D004194 ORTHO05D005641 3.2e-210 735.3 461 77.4
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 5.5e-210 734.6 459 76.3
AL6G21480 Arabidopsis lyrata HOM05D004194 ORTHO05D005641 7.2e-210 734.2 459 76.7
CARHR202370 Cardamine hirsuta HOM05D004194 ORTHO05D005641 9.4e-210 733.8 459 75.8
Sp6g32570 Schrenkiella parvula HOM05D004194 ORTHO05D005641 1.2e-209 733.4 459 75.8
unitig_578.g16695 Utricularia gibba HOM05D004194 ORTHO05D005641 1.2e-209 733.4 484 74.4
C09p65910 Brassica napus HOM05D004194 ORTHO05D005641 1.6e-209 733.0 459 76.0
BolC9t59414H Brassica oleracea HOM05D004194 ORTHO05D005641 1.6e-209 733.0 459 75.8
BcaNung01903 Brassica carinata HOM05D004194 ORTHO05D005641 2.1e-209 732.6 459 75.6
Mapoly0005s0193 Marchantia polymorpha HOM05D004194 ORTHO05D005641 2.1e-209 732.6 468 75.6
arahy.Tifrunner.gnm1.ann1.N12FQY Arachis hypogaea HOM05D004194 ORTHO05D005641 2.7e-209 732.3 497 72.0
Thhalv10013269m.g Eutrema salsugineum HOM05D004194 ORTHO05D005641 2.7e-209 732.3 506 70.9
SMO143G0205 Selaginella moellendorffii HOM05D004194 ORTHO05D005641 1.0e-208 730.3 458 76.2
Carub.0006s0941 Capsella rubella HOM05D004194 ORTHO05D005641 1.1e-207 726.9 459 75.4
THA.LOC104806871 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 1.9e-207 726.1 459 75.2
SGA_v2.0_scaffold5G02969 Striga asiatica HOM05D004194 ORTHO05D005641 7.4e-207 724.2 511 71.2
MELO3C011085.2 Cucumis melo HOM05D004194 ORTHO05D005641 1.7e-206 723.0 477 73.2
Sabra02G0083500 Salix brachista HOM05D004194 ORTHO05D005641 1.7e-206 723.0 518 69.5
Pp3c18_13220 Physcomitrium patens HOM05D004194 ORTHO05D005641 2.0e-204 716.1 462 74.2
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 4.5e-204 714.9 480 72.1
AagrBONN_evm.TU.Sc2ySwM_362.1891 Anthoceros agrestis HOM05D004194 ORTHO05D005641 2.2e-203 712.6 466 74.2
Zm00001eb396370 Zea mays HOM05D004194 ORTHO05D005641 5.0e-203 711.4 463 74.1
CBR_g48741 Chara braunii HOM05D004194 ORTHO05D005641 2.1e-201 706.1 457 73.5
ClCG11G014580 Citrullus lanatus HOM05D004194 ORTHO05D005641 2.7e-201 705.7 465 74.8
Ah.06g192260 Amaranthus hybridus HOM05D004194 ORTHO05D005641 4.4e-199 698.4 414 80.7
SHI09678 Sapria himalayana HOM05D004194 ORTHO05D005641 3.1e-197 692.2 461 73.3
COL.COLO4_35249 Corchorus olitorius HOM05D004194 ORTHO05D005641 1.5e-196 689.9 473 72.5
HPP92_001058 Vanilla planifolia HOM05D004194 ORTHO05D005641 1.7e-195 686.4 481 71.5
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 1.1e-194 683.7 451 74.5
Nitab4.5_0010888g0020 Nicotiana tabacum HOM05D004194 ORTHO05D005641 6.3e-190 667.9 382 85.3
Migut.N01596 Erythranthe guttata HOM05D004194 ORTHO05D005641 1.6e-188 663.3 461 71.1
Nitab4.5_0000131g0240 Nicotiana tabacum HOM05D004194 ORTHO05D005641 2.0e-188 662.9 382 84.8
Os03g0305500 Oryza sativa ssp. japonica HOM05D004194 ORTHO05D005641 1.0e-187 660.6 430 74.9
Dinv42612 Davidia involucrata HOM05D004194 ORTHO05D005641 8.5e-187 657.5 383 84.3
Lalb_Chr08g0242531 Lupinus albus HOM05D004194 ORTHO05D005641 3.5e-180 635.6 373 80.7
MD14G1006200 Malus domestica HOM05D004194 ORTHO05D005641 5.9e-180 634.8 463 70.4
Phvul.009G036600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 1.0e-179 634.0 373 80.7
PRCOL_00005568 Prasinoderma coloniale HOM05D004194 ORTHO05D005641 2.7e-177 625.9 453 66.0
BcaC03g13340 Brassica carinata HOM05D004194 ORTHO05D005641 1.8e-176 623.2 459 69.5
HanXRQChr15g0484861 Helianthus annuus HOM05D004194 ORTHO05D005641 1.3e-174 617.1 711 49.4
BcaC01g05557 Brassica carinata HOM05D004194 ORTHO05D005641 1.2e-172 610.5 453 66.7
MD14G1006400 Malus domestica HOM05D004194 ORTHO05D005641 1.0e-168 597.4 378 78.3
BolC2t06434H Brassica oleracea HOM05D004194 ORTHO05D005641 2.3e-168 596.3 458 67.2
BcaC04g19277 Brassica carinata HOM05D004194 ORTHO05D005641 4.1e-165 585.5 425 67.8
C03p24950 Brassica napus HOM05D004194 ORTHO05D005641 1.2e-159 567.4 453 62.9
Sc11g0003910 Simmondsia chinensis HOM05D004194 ORTHO05D005641 1.3e-155 553.9 323 83.9
Actinidia33569 Actinidia chinensis HOM05D004194 ORTHO05D005641 1.1e-152 544.3 402 70.9
Oeu049772.1 Olea europaea HOM05D004194 ORTHO05D005641 4.3e-114 416.0 237 84.8
BcaNung01905 Brassica carinata HOM05D004194 ORTHO05D005641 3.7e-113 412.9 316 67.4
Lj4C718T1 Lonicera japonica HOM05D004194 ORTHO05D005641 5.3e-112 409.1 252 80.2
MCO11G430 Micromonas commoda HOM05D004194 ORTHO05D005641 6.3e-97 359.0 449 41.0
Sed0012940 Sechium edule HOM05D004194 ORTHO05D005641 1.1e-96 358.2 292 61.3
Cre01.g021251 Chlamydomonas reinhardtii HOM05D004194 ORTHO05D005641 1.1e-90 338.2 456 39.7
C02p04750 Brassica napus HOM05D004194 ORTHO05D005641 7.4e-90 335.5 247 68.8
HPP92_001149 Vanilla planifolia HOM05D004194 ORTHO05D005641 1.3e-89 334.7 201 80.6
Cfa022469 Carpinus fangiana HOM05D004194 ORTHO05D005641 2.7e-84 317.0 460 37.0
Oeu049771.1 Olea europaea HOM05D004194 ORTHO05D005641 2.2e-73 280.8 230 62.6
Ah.06g192250 Amaranthus hybridus HOM05D004194 ORTHO05D005641 2.0e-63 247.7 384 41.9
arahy.Tifrunner.gnm1.ann1.1M3GV3 Arachis hypogaea HOM05D004194 ORTHO05D005641 5.5e-61 239.6 131 86.3
Oeu035352.1 Olea europaea HOM05D004194 ORTHO05D005641 2.7e-55 220.7 143 75.5
Psat6g188680 Pisum sativum HOM05D004194 ORTHO05D005641 5.9e-55 219.5 170 63.5
A02p00760 Brassica napus HOM05D004194 ORTHO05D005641 1.6e-52 211.5 166 66.3
PSO478G2000 Papaver somniferum HOM05D004194 ORTHO05D005641 3.6e-52 210.3 196 57.7
SEGI_18549 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 2.7e-47 194.1 124 69.4
SEGI_11237 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 5.6e-45 186.4 98 91.8
C02p04760 Brassica napus HOM05D004194 ORTHO05D005641 9.8e-42 175.6 131 61.8
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 1.9e-40 171.4 373 30.0
BcaB01g03715 Brassica carinata HOM05D004194 ORTHO05D005641 2.7e-39 167.5 249 40.2
Oeu028023.1 Olea europaea HOM05D004194 ORTHO05D033851 1.7e-38 164.9 95 82.1
Psat6g188720 Pisum sativum HOM05D001289 ORTHO05D005641 6.6e-38 162.9 122 64.8
PSO349G0016 Papaver somniferum HOM05D004194 ORTHO05D005641 7.5e-34 149.4 80 87.5
A02p00750 Brassica napus HOM05D004194 ORTHO05D005641 1.0e-30 139.0 93 77.4
Actinidia19243 Actinidia chinensis HOM05D004194 ORTHO05D005641 1.7e-30 138.3 124 51.6
Aqoxy84s004 Aquilegia oxysepala HOM05D004194 ORTHO05D077318 1.9e-29 134.8 293 30.7
VMungo0331G0568 Vigna mungo HOM05D004194 ORTHO05D007986 8.1e-28 129.4 100 65.0
VMungo1127G2164 Vigna mungo HOM05D004194 ORTHO05D007986 1.5e-26 125.2 100 64.0
BraA02t05060Z Brassica rapa HOM05D004194 ORTHO05D033851 3.7e-25 120.6 74 77.0
Psat6g163800 Pisum sativum HOM05D004194 ORTHO05D037373 4.0e-11 73.9 67 55.2
BcaNung01906 Brassica carinata HOM05D004194 ORTHO05D005641 9.0e-11 72.8 54 55.6
Psat2g086120 Pisum sativum HOM05D004194 ORTHO05D037373 1.2e-10 72.4 47 68.1
Sed0027437 Sechium edule HOM05D004194 ORTHO05D033851 9.9e-10 69.3 41 78.0
RcHm_v2.0_Chr6g0244231 Rosa chinensis HOM05D004194 ORTHO05D341107 4.2e-08 63.9 61 55.7
Psat5g254960 Pisum sativum HOM05D015311 ORTHO05D321322 1.6e-07 62.0 38 78.9
Psat3g096720 Pisum sativum HOM05D004194 ORTHO05D324018 7.9e-07 59.7 35 74.3


User provided reference genes

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