Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0763G164 Amborella trichopoda HOM05D003673 ORTHO05D004764 4.6e-163 577.8 284 100.0
Nitab4.5_0000006g0440 Nicotiana tabacum HOM05D003673 ORTHO05D004764 3.5e-110 402.1 283 71.4
Nitab4.5_0002201g0040 Nicotiana tabacum HOM05D003673 ORTHO05D004764 4.5e-110 401.7 283 71.4
Oeu051389.1 Olea europaea HOM05D003673 ORTHO05D004764 7.7e-110 401.0 283 70.7
LjContig00049g0013493 Lotus japonicus HOM05D003673 ORTHO05D004764 2.2e-109 399.4 283 70.0
Peaxi162Scf00416g00004 Petunia axillaris HOM05D003673 ORTHO05D004764 3.8e-109 398.7 284 70.1
Hund22282 Selenicereus undatus HOM05D003673 ORTHO05D004764 6.5e-109 397.9 287 68.3
THA.LOC104815838 Tarenaya hassleriana HOM05D003673 ORTHO05D004764 6.5e-109 397.9 275 69.8
Sopen05g024810 Solanum pennellii HOM05D003673 ORTHO05D004764 1.5e-108 396.7 285 70.9
PGSC0003DMG400017707 Solanum tuberosum HOM05D003673 ORTHO05D004764 1.9e-108 396.4 283 70.3
ECA238G4715 Erigeron canadensis HOM05D003673 ORTHO05D004764 2.5e-108 396.0 287 68.3
QL08p044989 Quercus lobata HOM05D003673 ORTHO05D004764 4.2e-108 395.2 280 69.3
Thecc.01G168600 Theobroma cacao HOM05D003673 ORTHO05D004764 7.2e-108 394.4 285 68.8
Gorai.001G092000 Gossypium raimondii HOM05D003673 ORTHO05D004764 9.4e-108 394.0 274 70.1
CAN.G7.15 Capsicum annuum HOM05D003673 ORTHO05D004764 1.2e-107 393.7 283 69.3
Cfa023358 Carpinus fangiana HOM05D003673 ORTHO05D004764 1.2e-107 393.7 292 67.5
Gohir.A07G080400 Gossypium hirsutum HOM05D003673 ORTHO05D004764 1.2e-107 393.7 274 70.1
SGA_v2.0_scaffold73G24479 Striga asiatica HOM05D003673 ORTHO05D004764 1.2e-107 393.7 271 71.2
COL.COLO4_38400 Corchorus olitorius HOM05D003673 ORTHO05D004764 2.1e-107 392.9 285 68.4
Ciclev10031587m.g Citrus clementina HOM05D003673 ORTHO05D004764 2.7e-107 392.5 281 69.8
Gohir.D07G086000 Gossypium hirsutum HOM05D003673 ORTHO05D004764 4.7e-107 391.7 274 69.7
Sed0005423 Sechium edule HOM05D003673 ORTHO05D004764 8.0e-107 391.0 290 66.9
Cpa.g.sc50.111 Carica papaya HOM05D003673 ORTHO05D004764 1.0e-106 390.6 283 68.6
Manes.02G088900 Manihot esculenta HOM05D003673 ORTHO05D004764 1.4e-106 390.2 288 68.4
Haze_13556 Corylus avellana HOM05D003673 ORTHO05D004764 1.8e-106 389.8 290 66.6
Solyc07g045050.3 Solanum lycopersicum HOM05D003673 ORTHO05D004764 1.8e-106 389.8 283 69.3
FvH4_6g38670 Fragaria vesca HOM05D003673 ORTHO05D004764 2.3e-106 389.4 280 67.9
FAN02G0649 Fragaria x ananassa HOM05D003673 ORTHO05D004764 2.3e-106 389.4 280 67.9
FAN14G2563 Fragaria x ananassa HOM05D003673 ORTHO05D004764 2.3e-106 389.4 280 67.9
Sopen07g023610 Solanum pennellii HOM05D003673 ORTHO05D004764 2.3e-106 389.4 283 69.3
VMungo0647G2026 Vigna mungo HOM05D003673 ORTHO05D004764 2.3e-106 389.4 282 69.5
AL1G16600 Arabidopsis lyrata HOM05D003673 ORTHO05D004764 3.0e-106 389.0 275 68.4
EL10Ac9g22832 Beta vulgaris HOM05D003673 ORTHO05D004764 4.0e-106 388.7 272 68.8
Carub.0001s0594 Capsella rubella HOM05D003673 ORTHO05D004764 4.0e-106 388.7 275 68.4
Sabra02G0046800 Salix brachista HOM05D003673 ORTHO05D004764 4.0e-106 388.7 277 70.0
Aa31LG1G7910 Aethionema arabicum HOM05D003673 ORTHO05D004764 5.2e-106 388.3 276 68.5
MSTRG.14903 Avicennia marina HOM05D003673 ORTHO05D004764 5.2e-106 388.3 273 70.0
CANSAT64G2396 Cannabis sativa HOM05D003673 ORTHO05D004764 8.8e-106 387.5 273 69.2
Glyma.14G030400 Glycine max HOM05D003673 ORTHO05D004764 8.8e-106 387.5 281 69.0
Migut.M00071 Erythranthe guttata HOM05D003673 ORTHO05D004764 1.2e-105 387.1 276 68.1
Sp1g05330 Schrenkiella parvula HOM05D003673 ORTHO05D004764 1.2e-105 387.1 275 68.4
BcaNung07075 Brassica carinata HOM05D003673 ORTHO05D004764 1.5e-105 386.7 273 68.9
A10p05210 Brassica napus HOM05D003673 ORTHO05D004764 1.5e-105 386.7 273 69.2
C05p04810 Brassica napus HOM05D003673 ORTHO05D004764 1.5e-105 386.7 273 68.9
BolC5t29254H Brassica oleracea HOM05D003673 ORTHO05D004764 1.5e-105 386.7 273 68.9
BraA10t42788Z Brassica rapa HOM05D003673 ORTHO05D004764 1.5e-105 386.7 273 69.2
PGR042G2748 Punica granatum HOM05D003673 ORTHO05D004764 1.5e-105 386.7 288 67.4
RcHm_v2.0_Chr2g0152131 Rosa chinensis HOM05D003673 ORTHO05D004764 1.5e-105 386.7 280 68.2
vmacro04781 Vaccinium macrocarpon HOM05D003673 ORTHO05D004764 1.5e-105 386.7 273 67.8
FAN05G2105 Fragaria x ananassa HOM05D003673 ORTHO05D004764 2.6e-105 386.0 280 67.1
MELO3C022961.2 Cucumis melo HOM05D003673 ORTHO05D004764 3.4e-105 385.6 280 67.5
FAN09G3261 Fragaria x ananassa HOM05D003673 ORTHO05D004764 3.4e-105 385.6 280 66.8
PGSC0003DMG400017420 Solanum tuberosum HOM05D003673 ORTHO05D004764 3.4e-105 385.6 283 68.2
arahy.Tifrunner.gnm1.ann1.FDUH0H Arachis hypogaea HOM05D003673 ORTHO05D004764 4.4e-105 385.2 280 68.2
Potri.002G057400 Populus trichocarpa HOM05D003673 ORTHO05D004764 4.4e-105 385.2 277 69.7
CiPaw.03G191900 Carya illinoinensis HOM05D003673 ORTHO05D004764 5.7e-105 384.8 290 66.6
CsaV3_4G032000 Cucumis sativus L. HOM05D003673 ORTHO05D004764 5.7e-105 384.8 280 67.5
CANSAT64G0060 Cannabis sativa HOM05D003673 ORTHO05D004764 7.5e-105 384.4 273 68.5
Ca_06264_v3 Cicer arietinum L. HOM05D003673 ORTHO05D004764 9.8e-105 384.0 281 67.3
Ca_30265_v3 Cicer arietinum L. HOM05D003673 ORTHO05D004764 9.8e-105 384.0 281 67.3
ClCG11G016540 Citrullus lanatus HOM05D003673 ORTHO05D004764 9.8e-105 384.0 280 67.9
DCAR_023045 Daucus carota HOM05D003673 ORTHO05D004764 9.8e-105 384.0 280 68.9
TPR.G10168 Trifolium pratense HOM05D003673 ORTHO05D004764 9.8e-105 384.0 279 67.7
arahy.Tifrunner.gnm1.ann1.I7WXBP Arachis hypogaea HOM05D003673 ORTHO05D004764 1.3e-104 383.6 280 67.5
HanXRQChr14g0451901 Helianthus annuus HOM05D003673 ORTHO05D004764 1.7e-104 383.3 288 65.6
Prupe.3G177700 Prunus persica HOM05D003673 ORTHO05D004764 1.7e-104 383.3 280 67.9
SalBow1G2057 Salvia bowleyana HOM05D003673 ORTHO05D004764 1.7e-104 383.3 281 67.6
BcaC07g42060 Brassica carinata HOM05D003673 ORTHO05D004764 2.8e-104 382.5 273 67.4
Thhalv10007634m.g Eutrema salsugineum HOM05D003673 ORTHO05D004764 2.8e-104 382.5 275 67.6
Lalb_Chr04g0248921 Lupinus albus HOM05D003673 ORTHO05D004764 3.7e-104 382.1 280 66.4
Ah.01g013590 Amaranthus hybridus HOM05D003673 ORTHO05D004764 4.9e-104 381.7 273 68.5
C08p51160 Brassica napus HOM05D003673 ORTHO05D004764 6.3e-104 381.3 273 67.8
BolC8t52642H Brassica oleracea HOM05D003673 ORTHO05D004764 6.3e-104 381.3 273 67.8
Medtr5g091060 Medicago truncatula HOM05D003673 ORTHO05D004764 8.3e-104 380.9 279 67.4
A09p66930 Brassica napus HOM05D003673 ORTHO05D004764 1.1e-103 380.6 273 68.1
Eucgr.A02022 Eucalyptus grandis HOM05D003673 ORTHO05D004764 1.1e-103 380.6 279 67.0
Sc19g0001760 Simmondsia chinensis HOM05D003673 ORTHO05D004764 1.1e-103 380.6 286 66.1
Aqoxy1G01890 Aquilegia oxysepala HOM05D003673 ORTHO05D004764 1.4e-103 380.2 276 68.5
Dinv07706 Davidia involucrata HOM05D003673 ORTHO05D004764 1.4e-103 380.2 286 65.7
Phvul.008G194300 Phaseolus vulgaris HOM05D003673 ORTHO05D004764 1.4e-103 380.2 275 68.0
SEGI_30126 Sequoiadendron giganteum HOM05D003673 ORTHO05D004764 1.4e-103 380.2 271 69.0
CSS0042622 Camellia sinensis var. sinensis HOM05D003673 ORTHO05D004764 1.8e-103 379.8 290 64.8
TWI59G0698 Tripterygium wilfordii HOM05D003673 ORTHO05D004764 3.1e-103 379.0 278 67.6
AagrBONN_evm.TU.Sc2ySwM_368.1457 Anthoceros agrestis HOM05D003673 ORTHO05D004764 5.4e-103 378.3 272 65.8
Aqoxy1G01891 Aquilegia oxysepala HOM05D003673 ORTHO05D004764 5.4e-103 378.3 275 67.3
AUR62015128 Chenopodium quinoa HOM05D003673 ORTHO05D004764 5.4e-103 378.3 296 63.9
Hma1.2p1_0033F.1_g021200 Hydrangea macrophylla HOM05D003673 ORTHO05D004764 5.4e-103 378.3 292 64.4
MBI18_g13605_MAGBIO Magnolia biondii HOM05D003673 ORTHO05D004764 5.4e-103 378.3 274 67.5
AUR62017589 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.2e-102 377.1 294 63.9
MD17G1134800 Malus domestica HOM05D003673 ORTHO05D004764 1.2e-102 377.1 280 65.7
Nn7g37943 Nelumbo nucifera HOM05D003673 ORTHO05D004764 1.2e-102 377.1 285 64.9
unitig_899.g15456 Utricularia gibba HOM05D003673 ORTHO05D004764 1.2e-102 377.1 279 67.0
CDE05G0951 Ceratophyllum demersum HOM05D003673 ORTHO05D004764 2.0e-102 376.3 272 66.2
Rhsim07G0197900 Rhododendron simsii HOM05D003673 ORTHO05D004764 3.5e-102 375.6 273 67.0
PSO675G0095 Papaver somniferum HOM05D003673 ORTHO05D004764 7.7e-102 374.4 288 66.3
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 7.7e-102 374.4 272 68.8
BraA09t42028Z Brassica rapa HOM05D003673 ORTHO05D004764 2.9e-101 372.5 279 66.3
EL10Ac9g22831 Beta vulgaris HOM05D003673 ORTHO05D004764 3.8e-101 372.1 277 67.1
TAR626G0427 Trochodendron aralioides HOM05D003673 ORTHO05D004764 1.9e-100 369.8 274 67.5
Pp3c2_15470 Physcomitrium patens HOM05D003673 ORTHO05D004764 4.3e-100 368.6 273 66.7
Pp3c1_27020 Physcomitrium patens HOM05D003673 ORTHO05D004764 5.6e-100 368.2 273 66.3
Zm00001eb232960 Zea mays HOM05D003673 ORTHO05D004764 8.0e-99 364.4 281 65.1
Mapoly0126s0038 Marchantia polymorpha HOM05D003673 ORTHO05D004764 1.4e-98 363.6 270 63.0
Eucgr.A02024 Eucalyptus grandis HOM05D003673 ORTHO05D004764 2.3e-98 362.8 279 63.4
Medtr5g090990 Medicago truncatula HOM05D003673 ORTHO05D004764 5.2e-98 361.7 277 64.6
Eucgr.A02023 Eucalyptus grandis HOM05D003673 ORTHO05D004764 1.5e-97 360.1 280 62.5
PSO675G5654 Papaver somniferum HOM05D003673 ORTHO05D004764 1.3e-96 357.1 285 63.9
COL.COLO4_38402 Corchorus olitorius HOM05D003673 ORTHO05D004764 6.4e-96 354.8 271 64.9
Psat2g017880 Pisum sativum HOM05D003673 ORTHO05D004764 7.0e-95 351.3 281 62.6
CBR_g41741 Chara braunii HOM05D003673 ORTHO05D004764 3.5e-94 349.0 291 59.5
Medtr1g022325 Medicago truncatula HOM05D003673 ORTHO05D004764 1.7e-93 346.7 275 62.5
Lsat_1_v5_gn_6_42781 Lactuca sativa HOM05D003673 ORTHO05D004764 2.3e-93 346.3 281 60.1
SMO358G0369 Selaginella moellendorffii HOM05D003673 ORTHO05D004764 3.0e-93 345.9 272 61.8
CBR_g46667 Chara braunii HOM05D003673 ORTHO05D004764 3.9e-93 345.5 289 59.9
Os02g0168100 Oryza sativa ssp. japonica HOM05D003673 ORTHO05D004764 3.9e-93 345.5 221 73.8
CBR_g8495 Chara braunii HOM05D003673 ORTHO05D004764 2.1e-91 339.7 291 57.7
BcaB02g06780 Brassica carinata HOM05D003673 ORTHO05D004764 3.6e-91 339.0 273 62.6
CANSAT64G0777 Cannabis sativa HOM05D003673 ORTHO05D004764 1.2e-89 334.0 283 58.7
AagrBONN_evm.TU.Sc2ySwM_368.1545 Anthoceros agrestis HOM05D003673 ORTHO05D004764 2.0e-89 333.2 269 61.7
TPR.G25540 Trifolium pratense HOM05D003673 ORTHO05D004764 2.6e-89 332.8 222 69.4
HanXRQChr02g0055101 Helianthus annuus HOM05D003673 ORTHO05D004764 2.2e-88 329.7 274 59.1
HPP92_002268 Vanilla planifolia HOM05D003673 ORTHO05D004764 4.9e-88 328.6 253 64.4
PRCOL_00001771 Prasinoderma coloniale HOM05D003673 ORTHO05D004764 5.4e-87 325.1 271 59.8
PSO210G5105 Papaver somniferum HOM05D003673 ORTHO05D004764 2.1e-83 313.2 275 56.4
Cre09.g399030 Chlamydomonas reinhardtii HOM05D003673 ORTHO05D004764 3.6e-83 312.4 275 57.5
Cre09.g398993 Chlamydomonas reinhardtii HOM05D003673 ORTHO05D004764 4.7e-83 312.0 275 57.5
MCO11G070 Micromonas commoda HOM05D003673 ORTHO05D004764 8.1e-83 311.2 279 59.1
CDE02G2922 Ceratophyllum demersum HOM05D003673 ORTHO05D004764 2.3e-82 309.7 272 59.6
PSO170G5322 Papaver somniferum HOM05D003673 ORTHO05D004764 2.3e-82 309.7 270 57.8
PSO210G1881 Papaver somniferum HOM05D003673 ORTHO05D004764 2.6e-81 306.2 271 55.0
PSO210G6115 Papaver somniferum HOM05D003673 ORTHO05D004764 5.8e-81 305.1 275 55.6
PSO144G0168 Papaver somniferum HOM05D003673 ORTHO05D004764 2.9e-80 302.8 273 55.7
Lsat_1_v5_gn_2_96721 Lactuca sativa HOM05D003673 ORTHO05D004764 8.3e-80 301.2 236 65.7
CARHR006180 Cardamine hirsuta HOM05D003673 ORTHO05D004764 9.2e-79 297.7 225 64.9
Zm00001eb304950 Zea mays HOM05D003673 ORTHO05D004764 5.1e-77 292.0 273 53.5
AT1G06570 Arabidopsis thaliana HOM05D003673 ORTHO05D004764 1.9e-76 290.0 223 64.6
Dinv07089 Davidia involucrata HOM05D003673 ORTHO05D004764 1.9e-76 290.0 236 61.4
Potri.005G205200 Populus trichocarpa HOM05D003673 ORTHO05D004764 1.2e-75 287.3 230 62.6
RcHm_v2.0_Chr2g0152141 Rosa chinensis HOM05D003673 ORTHO05D004764 1.1e-74 284.3 228 61.4
Actinidia24401 Actinidia chinensis HOM05D003673 ORTHO05D004764 1.8e-74 283.5 275 55.3
Lj8C8T1 Lonicera japonica HOM05D003673 ORTHO05D004764 1.8e-74 283.5 234 62.8
Thecc.01G168800 Theobroma cacao HOM05D003673 ORTHO05D004764 2.0e-73 280.0 283 53.4
SMO118G0557 Selaginella moellendorffii HOM05D003673 ORTHO05D004764 2.2e-72 276.6 271 51.7
Atru.chr6.2046 Acer truncatum HOM05D003673 ORTHO05D004764 2.9e-72 276.2 173 75.1
ECA233G6193 Erigeron canadensis HOM05D003673 ORTHO05D004764 2.9e-72 276.2 229 59.4
Medtr5g090980 Medicago truncatula HOM05D003673 ORTHO05D004764 1.8e-66 256.9 274 49.6
Ah.02g114000 Amaranthus hybridus HOM05D003673 ORTHO05D004764 2.9e-64 249.6 275 46.5
Glyma.02G284600 Glycine max HOM05D003673 ORTHO05D004764 8.7e-61 238.0 198 62.1
MD13G1156600 Malus domestica HOM05D003673 ORTHO05D004764 3.3e-60 236.1 228 51.8
MD09G1148400 Malus domestica HOM05D003673 ORTHO05D004764 6.2e-59 231.9 280 47.9
arahy.Tifrunner.gnm1.ann1.KE2YGW Arachis hypogaea HOM05D003673 ORTHO05D004764 1.5e-57 227.3 197 61.9
AUR62039301 Chenopodium quinoa HOM05D003673 ORTHO05D004764 4.9e-56 222.2 203 51.7
AUR62044533 Chenopodium quinoa HOM05D003673 ORTHO05D004764 4.9e-56 222.2 203 51.7
AUR62035118 Chenopodium quinoa HOM05D003673 ORTHO05D004764 2.1e-54 216.9 197 52.3
AUR62039293 Chenopodium quinoa HOM05D003673 ORTHO05D004764 2.1e-54 216.9 197 52.3
AUR62039297 Chenopodium quinoa HOM05D003673 ORTHO05D004764 2.1e-54 216.9 197 52.3
Solyc05g041200.4 Solanum lycopersicum HOM05D003673 ORTHO05D004764 1.4e-50 204.1 166 65.1
Cc05_g01440 Coffea canephora HOM05D003673 ORTHO05D004764 1.5e-44 184.1 117 75.2
GSVIVG01020837001 Vitis vinifera HOM05D003673 ORTHO05D004764 1.1e-42 177.9 106 77.4
Thecc.01G169100 Theobroma cacao HOM05D003673 ORTHO05D004764 6.5e-40 168.7 162 56.2
arahy.Tifrunner.gnm1.ann1.3I6JIA Arachis hypogaea HOM05D003673 ORTHO05D004764 4.8e-35 152.5 143 58.7
FvH4_5g31130 Fragaria vesca HOM05D003673 ORTHO05D004764 8.7e-29 131.7 88 68.2
FAN18G0200 Fragaria x ananassa HOM05D003673 ORTHO05D004764 5.7e-28 129.0 91 63.7
Haze_25279 Corylus avellana HOM05D003673 ORTHO05D004764 4.8e-27 125.9 162 45.1
AUR62016194 Chenopodium quinoa HOM05D003673 ORTHO05D004764 8.2e-27 125.2 152 44.7
MD05G1024200 Malus domestica HOM05D003673 ORTHO05D004764 1.0e-24 118.2 75 69.3
COL.COLO4_38401 Corchorus olitorius HOM05D003673 ORTHO05D004764 2.1e-22 110.5 148 43.2
TPR.G10161 Trifolium pratense HOM05D003673 ORTHO05D004764 2.8e-19 100.1 56 78.6
GSVIVG01013079001 Vitis vinifera HOM05D003673 ORTHO05D004764 6.3e-19 99.0 60 73.3
COL.COLO4_20758 Corchorus olitorius HOM05D003673 ORTHO05D004764 1.4e-18 97.8 68 69.1
CARHR006190 Cardamine hirsuta HOM05D003673 ORTHO05D004764 2.4e-18 97.1 53 81.1
Lj8C8T3 Lonicera japonica HOM05D003673 ORTHO05D004764 4.1e-10 69.7 39 79.5
COL.COLO4_19675 Corchorus olitorius HOM05D003673 ORTHO05D163473 3.8e-08 63.2 45 62.2


User provided reference genes

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