Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0763G116 Amborella trichopoda HOM05D005636 ORTHO05D006912 1.2e-138 496.5 248 100.0
SEGI_36348 Sequoiadendron giganteum HOM05D005636 ORTHO05D006912 4.1e-83 312.0 219 64.8
Manes.02G084000 Manihot esculenta HOM05D005636 ORTHO05D006912 2.8e-79 299.3 214 62.6
Cfa022913 Carpinus fangiana HOM05D005636 ORTHO05D006912 4.7e-79 298.5 214 63.6
CSS0038062 Camellia sinensis var. sinensis HOM05D005636 ORTHO05D006912 8.9e-78 294.3 215 62.8
Ciclev10031950m.g Citrus clementina HOM05D005636 ORTHO05D006912 1.5e-77 293.5 217 61.8
Hma1.2p1_0722F.1_g208750 Hydrangea macrophylla HOM05D005636 ORTHO05D006912 2.0e-77 293.1 215 64.2
PSO675G1578 Papaver somniferum HOM05D005636 ORTHO05D006912 2.0e-77 293.1 215 60.0
Actinidia11200 Actinidia chinensis HOM05D005636 ORTHO05D006912 5.8e-77 291.6 215 61.4
Thecc.01G161100 Theobroma cacao HOM05D005636 ORTHO05D006912 5.8e-77 291.6 216 61.1
Atru.chr1.3606 Acer truncatum HOM05D005636 ORTHO05D006912 1.3e-76 290.4 215 62.8
TAR627G0895 Trochodendron aralioides HOM05D005636 ORTHO05D006912 1.7e-76 290.0 217 61.8
Sabra02G0049100 Salix brachista HOM05D005636 ORTHO05D006912 2.2e-76 289.7 215 59.5
Cpa.g.sc50.79 Carica papaya HOM05D005636 ORTHO05D006912 2.9e-76 289.3 215 60.9
Dinv31558 Davidia involucrata HOM05D005636 ORTHO05D006912 3.7e-76 288.9 215 62.3
PSO541G3223 Papaver somniferum HOM05D005636 ORTHO05D006912 3.7e-76 288.9 215 59.1
Glyma.20G056400 Glycine max HOM05D005636 ORTHO05D006912 4.9e-76 288.5 215 63.3
Nn6g34386 Nelumbo nucifera HOM05D005636 ORTHO05D006912 4.9e-76 288.5 228 59.6
COL.COLO4_33742 Corchorus olitorius HOM05D005636 ORTHO05D006912 8.3e-76 287.7 215 60.5
Aqoxy1G01878 Aquilegia oxysepala HOM05D005636 ORTHO05D006912 1.1e-75 287.3 254 54.7
Gohir.A05G378700 Gossypium hirsutum HOM05D005636 ORTHO05D006912 1.1e-75 287.3 215 60.9
Gohir.D04G036900 Gossypium hirsutum HOM05D005636 ORTHO05D006912 1.1e-75 287.3 215 60.9
Solyc07g055980.3 Solanum lycopersicum HOM05D005636 ORTHO05D006912 1.1e-75 287.3 214 61.2
Sopen07g029330 Solanum pennellii HOM05D005636 ORTHO05D006912 1.1e-75 287.3 214 61.2
Aa31LG10G13390 Aethionema arabicum HOM05D005636 ORTHO05D006912 1.4e-75 287.0 216 59.3
PGSC0003DMG400017343 Solanum tuberosum HOM05D005636 ORTHO05D006912 1.4e-75 287.0 214 60.7
Gorai.012G041700 Gossypium raimondii HOM05D005636 ORTHO05D006912 2.4e-75 286.2 215 60.5
Lj6g0012077 Lotus japonicus HOM05D005636 ORTHO05D006912 2.4e-75 286.2 215 62.3
CAN.G585.52 Capsicum annuum HOM05D005636 ORTHO05D006912 3.2e-75 285.8 214 60.3
CARHR169230 Cardamine hirsuta HOM05D005636 ORTHO05D006912 4.1e-75 285.4 216 58.3
Lalb_Chr04g0257641 Lupinus albus HOM05D005636 ORTHO05D006912 4.1e-75 285.4 215 62.8
BcaC08g44944 Brassica carinata HOM05D005636 ORTHO05D006912 5.4e-75 285.0 216 59.7
A07p24370 Brassica napus HOM05D005636 ORTHO05D006912 5.4e-75 285.0 216 59.7
C06p25760 Brassica napus HOM05D005636 ORTHO05D006912 5.4e-75 285.0 216 59.7
BolC6t37738H Brassica oleracea HOM05D005636 ORTHO05D006912 5.4e-75 285.0 216 59.7
BraA07t30084Z Brassica rapa HOM05D005636 ORTHO05D006912 5.4e-75 285.0 216 59.7
Eucgr.K01200 Eucalyptus grandis HOM05D005636 ORTHO05D006912 5.4e-75 285.0 217 61.8
Potri.002G060600 Populus trichocarpa HOM05D005636 ORTHO05D006912 5.4e-75 285.0 215 59.1
THA.LOC104802275 Tarenaya hassleriana HOM05D005636 ORTHO05D006912 7.0e-75 284.6 217 59.9
Thhalv10006084m.g Eutrema salsugineum HOM05D005636 ORTHO05D006912 1.2e-74 283.9 216 59.3
GSVIVG01000791001 Vitis vinifera HOM05D005636 ORTHO05D006912 1.2e-74 283.9 215 61.9
BcaB02g07496 Brassica carinata HOM05D005636 ORTHO05D006912 1.6e-74 283.5 216 59.3
Sp5g04030 Schrenkiella parvula HOM05D005636 ORTHO05D006912 1.6e-74 283.5 216 59.3
AL5G40630 Arabidopsis lyrata HOM05D005636 ORTHO05D006912 2.1e-74 283.1 216 58.8
Potri.005G201100 Populus trichocarpa HOM05D005636 ORTHO05D006912 3.5e-74 282.3 219 58.0
FAN09G4115 Fragaria x ananassa HOM05D005636 ORTHO05D006912 7.8e-74 281.2 215 61.9
Cc05_g09330 Coffea canephora HOM05D005636 ORTHO05D006912 1.3e-73 280.4 214 60.3
Lsat_1_v5_gn_8_32020 Lactuca sativa HOM05D005636 ORTHO05D006912 1.3e-73 280.4 214 60.3
FvH4_6g38130 Fragaria vesca HOM05D005636 ORTHO05D006912 1.7e-73 280.0 216 61.6
FAN05G0596 Fragaria x ananassa HOM05D005636 ORTHO05D006912 2.3e-73 279.6 215 61.9
Phvul.002G231100 Phaseolus vulgaris HOM05D005636 ORTHO05D006912 2.3e-73 279.6 215 60.5
MD17G1140200 Malus domestica HOM05D005636 ORTHO05D006912 3.0e-73 279.3 229 57.6
Carub.0005s2561 Capsella rubella HOM05D005636 ORTHO05D006912 3.9e-73 278.9 216 57.4
Duzib187G1993 Durio zibethinus HOM05D005636 ORTHO05D006912 3.9e-73 278.9 215 58.6
Nitab4.5_0005557g0010 Nicotiana tabacum HOM05D005636 ORTHO05D006912 3.9e-73 278.9 214 59.3
RcHm_v2.0_Chr2g0151351 Rosa chinensis HOM05D005636 ORTHO05D006912 3.9e-73 278.9 244 56.1
AT3G58830 Arabidopsis thaliana HOM05D005636 ORTHO05D006912 5.1e-73 278.5 216 57.9
Sabra05G0153000 Salix brachista HOM05D005636 ORTHO05D006912 5.1e-73 278.5 219 58.0
Medtr1g046360 Medicago truncatula HOM05D005636 ORTHO05D006912 6.6e-73 278.1 226 58.4
Nitab4.5_0001675g0040 Nicotiana tabacum HOM05D005636 ORTHO05D006912 6.6e-73 278.1 214 59.3
PGSC0003DMG400007795 Solanum tuberosum HOM05D005636 ORTHO05D006912 6.6e-73 278.1 216 58.8
CiPaw.03G189200 Carya illinoinensis HOM05D005636 ORTHO05D006912 8.6e-73 277.7 217 59.0
Ca_16256_v3 Cicer arietinum L. HOM05D005636 ORTHO05D006912 8.6e-73 277.7 215 59.5
HanXRQChr12g0369761 Helianthus annuus HOM05D005636 ORTHO05D006912 8.6e-73 277.7 217 58.5
Solyc12g011020.2 Solanum lycopersicum HOM05D005636 ORTHO05D006912 1.5e-72 276.9 216 58.3
FAN14G2746 Fragaria x ananassa HOM05D005636 ORTHO05D006912 1.9e-72 276.6 246 56.5
PGR142G4384 Punica granatum HOM05D005636 ORTHO05D006912 1.9e-72 276.6 239 56.5
Lalb_Chr17g0335961 Lupinus albus HOM05D005636 ORTHO05D006912 3.3e-72 275.8 215 60.0
Phvul.005G057920 Phaseolus vulgaris HOM05D005636 ORTHO05D006912 3.3e-72 275.8 215 60.0
Sopen12g006380 Solanum pennellii HOM05D005636 ORTHO05D006912 3.3e-72 275.8 216 57.9
CsaV3_6G038020 Cucumis sativus L. HOM05D005636 ORTHO05D006912 7.3e-72 274.6 212 60.4
Oeu040028.1 Olea europaea HOM05D005636 ORTHO05D006912 7.3e-72 274.6 214 59.3
SGA_v2.0_scaffold130G34360 Striga asiatica HOM05D005636 ORTHO05D006912 9.5e-72 274.2 212 60.4
Psat5g112320 Pisum sativum HOM05D005636 ORTHO05D006912 1.2e-71 273.9 215 59.1
Peaxi162Scf00807g00219 Petunia axillaris HOM05D005636 ORTHO05D006912 1.6e-71 273.5 214 57.5
MD09G1152800 Malus domestica HOM05D005636 ORTHO05D006912 2.1e-71 273.1 215 59.1
TPR.G37891 Trifolium pratense HOM05D005636 ORTHO05D006912 2.1e-71 273.1 215 59.1
ECA233G1750 Erigeron canadensis HOM05D005636 ORTHO05D006912 2.8e-71 272.7 214 57.0
Medtr3g079530 Medicago truncatula HOM05D005636 ORTHO05D006912 2.8e-71 272.7 226 58.0
Oeu020065.1 Olea europaea HOM05D005636 ORTHO05D006912 2.8e-71 272.7 214 58.9
CAN.G164.23 Capsicum annuum HOM05D005636 ORTHO05D006912 3.6e-71 272.3 216 56.9
Pp3c4_17380 Physcomitrium patens HOM05D005636 ORTHO05D006912 3.6e-71 272.3 206 59.2
MELO3C014464.2 Cucumis melo HOM05D005636 ORTHO05D006912 4.7e-71 271.9 228 57.5
SalBow7G1748 Salvia bowleyana HOM05D005636 ORTHO05D006912 4.7e-71 271.9 214 58.4
THA.LOC104803221 Tarenaya hassleriana HOM05D005636 ORTHO05D006912 6.2e-71 271.6 217 56.7
Rhsim06G0118100 Rhododendron simsii HOM05D005636 ORTHO05D006912 8.1e-71 271.2 254 51.2
SalBow7G3906 Salvia bowleyana HOM05D005636 ORTHO05D006912 1.4e-70 270.4 214 57.0
AagrBONN_evm.TU.Sc2ySwM_228.4819 Anthoceros agrestis HOM05D005636 ORTHO05D006912 2.3e-70 269.6 221 55.7
Nitab4.5_0006934g0010 Nicotiana tabacum HOM05D005636 ORTHO05D006912 2.3e-70 269.6 214 57.5
Prupe.3G171400 Prunus persica HOM05D005636 ORTHO05D006912 1.5e-69 266.9 214 58.9
Sed0000049 Sechium edule HOM05D005636 ORTHO05D006912 1.5e-69 266.9 228 57.0
unitig_0.g2024 Utricularia gibba HOM05D005636 ORTHO05D006912 2.6e-69 266.2 213 58.2
Peaxi162Scf00111g00031 Petunia axillaris HOM05D005636 ORTHO05D006912 2.2e-68 263.1 214 57.0
Os01g0796500 Oryza sativa ssp. japonica HOM05D005636 ORTHO05D006912 4.9e-68 261.9 207 59.4
Migut.M00513 Erythranthe guttata HOM05D005636 ORTHO05D006912 6.4e-68 261.5 215 56.3
HanXRQChr13g0387431 Helianthus annuus HOM05D005636 ORTHO05D006912 6.4e-68 261.5 215 56.3
CDE08G0457 Ceratophyllum demersum HOM05D005636 ORTHO05D006912 1.1e-67 260.8 214 56.1
ClCG09G022370 Citrullus lanatus HOM05D005636 ORTHO05D006912 5.4e-67 258.5 249 53.0
arahy.Tifrunner.gnm1.ann1.59ND6F Arachis hypogaea HOM05D005636 ORTHO05D006912 1.6e-66 256.9 247 50.6
MSTRG.6754 Avicennia marina HOM05D005636 ORTHO05D006912 7.8e-66 254.6 185 61.6
BcaC08g44945 Brassica carinata HOM05D005636 ORTHO05D006912 7.8e-66 254.6 216 55.1
vmacro12452 Vaccinium macrocarpon HOM05D005636 ORTHO05D006912 8.6e-65 251.1 279 46.6
VMungo0540G1884 Vigna mungo HOM05D005636 ORTHO05D006912 1.9e-64 250.0 189 61.4
QL08p044016 Quercus lobata HOM05D005636 ORTHO05D006912 3.3e-64 249.2 180 63.3
VMungo0540G1461 Vigna mungo HOM05D005636 ORTHO05D006912 2.8e-63 246.1 190 61.1
SMO367G0867 Selaginella moellendorffii HOM05D005636 ORTHO05D006912 6.2e-63 245.0 216 54.2
Hma1.2p1_0888F.1_g232810 Hydrangea macrophylla HOM05D005636 ORTHO05D006912 8.1e-63 244.6 188 62.8
HPP92_010206 Vanilla planifolia HOM05D002349 ORTHO05D002464 1.1e-62 244.2 183 62.8
TWI59G0166 Tripterygium wilfordii HOM05D005636 ORTHO05D006912 3.1e-62 242.7 217 53.9
Mapoly0095s0041 Marchantia polymorpha HOM05D005636 ORTHO05D006912 3.4e-61 239.2 229 48.9
Sc14g0000770 Simmondsia chinensis HOM05D005636 ORTHO05D006912 1.3e-60 237.3 209 51.2
CAN.G732.7 Capsicum annuum HOM05D005636 ORTHO05D006912 2.9e-60 236.1 187 57.8
AUR62033992 Chenopodium quinoa HOM05D005636 ORTHO05D006912 6.4e-60 235.0 214 51.4
AUR62027489 Chenopodium quinoa HOM05D005636 ORTHO05D006912 2.4e-59 233.0 214 51.4
EL10Ac8g19235 Beta vulgaris HOM05D005636 ORTHO05D006912 3.2e-59 232.6 224 50.9
Nitab4.5_0000446g0070 Nicotiana tabacum HOM05D005636 ORTHO05D006912 9.2e-59 231.1 214 50.9
arahy.Tifrunner.gnm1.ann1.LGDT7B Arachis hypogaea HOM05D005636 ORTHO05D006912 2.7e-58 229.6 165 62.4
Ah.04g158730 Amaranthus hybridus HOM05D005636 ORTHO05D006912 1.4e-54 217.2 208 50.0
CBR_g66789 Chara braunii HOM05D005636 ORTHO05D006912 4.9e-52 208.8 196 50.5
CANSAT64G2722 Cannabis sativa HOM05D005636 ORTHO05D006912 8.4e-52 208.0 150 65.3
SGA_v2.0_scaffold70G23671 Striga asiatica HOM05D005636 ORTHO05D006912 1.6e-50 203.8 251 43.8
Cre04.g219900 Chlamydomonas reinhardtii HOM05D005636 ORTHO05D006912 2.3e-49 199.9 203 46.8
Haze_13492 Corylus avellana HOM05D005636 ORTHO05D006912 1.6e-47 193.7 144 61.1
Actinidia32519 Actinidia chinensis HOM05D005636 ORTHO05D006912 6.9e-46 188.3 215 47.0
MSTRG.14295 Avicennia marina HOM05D005636 ORTHO05D006912 1.5e-45 187.2 144 59.0
AagrBONN_evm.TU.Sc2ySwM_344.2384 Anthoceros agrestis HOM05D005636 ORTHO05D006912 2.6e-37 159.8 127 54.3
Lj1A625T29 Lonicera japonica HOM05D005636 ORTHO05D006912 3.8e-36 156.0 119 56.3
MCO16G670 Micromonas commoda HOM05D005636 ORTHO05D006912 1.8e-33 147.1 164 39.6
PRCOL_00003225 Prasinoderma coloniale HOM05D005636 ORTHO05D006912 8.7e-33 144.8 248 36.3
RcHm_v2.0_Chr2g0151251 Rosa chinensis HOM05D005636 ORTHO05D006912 6.2e-31 138.7 96 67.7
DCAR_009796 Daucus carota HOM05D005636 ORTHO05D006912 4.2e-27 125.9 230 33.9
Zm00001eb150880 Zea mays HOM05D005636 ORTHO05D006912 5.7e-24 115.5 94 55.3
AagrBONN_evm.TU.Sc2ySwM_344.2381 Anthoceros agrestis HOM05D005636 ORTHO05D006912 1.4e-22 110.9 82 61.0
CAN.G44.13 Capsicum annuum HOM05D005636 ORTHO05D006912 5.9e-21 105.5 70 68.6
CAN.G1530.4 Capsicum annuum HOM05D005636 ORTHO05D017742 5.7e-16 89.0 62 64.5
A04p02350 Brassica napus HOM05D005636 ORTHO05D006912 4.1e-06 56.2 53 54.7
Cfa023890 Carpinus fangiana HOM05D005636 ORTHO05D123467 4.1e-06 56.2 106 34.0
VMungo0720G3119 Vigna mungo HOM05D000196 ORTHO05D001288 7.0e-06 55.5 38 68.4


User provided reference genes

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