Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0763G047 Amborella trichopoda HOM05D003806 ORTHO05D004346 0.0e+00 1493.4 1128 100.0
MBI02_g35832_MAGBIO Magnolia biondii HOM05D003806 ORTHO05D004346 9.3e-82 309.7 1369 29.7
Dinv08951 Davidia involucrata HOM05D003806 ORTHO05D004346 1.8e-69 268.9 1198 34.9
TAR626G1670 Trochodendron aralioides HOM05D003806 ORTHO05D004346 1.8e-64 252.3 1199 32.3
CiPaw.04G076200 Carya illinoinensis HOM05D003806 ORTHO05D004346 4.1e-61 241.1 1094 25.3
Cpa.g.sc8.294 Carica papaya HOM05D003806 ORTHO05D004346 3.8e-59 234.6 1078 26.9
Sabra06G0014700 Salix brachista HOM05D003806 ORTHO05D004346 6.5e-59 233.8 1138 33.3
COL.COLO4_33757 Corchorus olitorius HOM05D003806 ORTHO05D004346 2.7e-57 228.4 1231 25.4
PGR031G3264 Punica granatum HOM05D003806 ORTHO05D004346 1.7e-54 219.2 1165 31.3
GSVIVG01015817001 Vitis vinifera HOM05D003806 ORTHO05D004346 8.2e-54 216.9 539 34.1
Prupe.3G186800 Prunus persica HOM05D003806 ORTHO05D004346 2.0e-52 212.2 1156 33.2
TAR624G1065 Trochodendron aralioides HOM05D003806 ORTHO05D004346 5.9e-52 210.7 654 32.1
DCAR_009841 Daucus carota HOM05D003806 ORTHO05D004346 8.5e-51 206.8 561 31.6
Sabra16G0025500 Salix brachista HOM05D003806 ORTHO05D004346 1.9e-50 205.7 1199 28.4
Sabra16G0020700 Salix brachista HOM05D003806 ORTHO05D004346 9.4e-50 203.4 1199 28.4
Duzib138G1777 Durio zibethinus HOM05D003806 ORTHO05D004346 2.0e-47 195.7 1191 30.2
Actinidia28585 Actinidia chinensis HOM05D003806 ORTHO05D004346 4.4e-47 194.5 1217 29.7
Thecc.01G172500 Theobroma cacao HOM05D003806 ORTHO05D004346 4.8e-46 191.0 1225 24.8
PSO541G2929 Papaver somniferum HOM05D003806 ORTHO05D004346 7.0e-45 187.2 1233 26.8
Nitab4.5_0000170g0440 Nicotiana tabacum HOM05D003806 ORTHO05D004346 1.6e-44 186.0 1171 30.4
TWI60G0662 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 5.9e-44 184.1 1246 29.7
MSTRG.6602 Avicennia marina HOM05D003806 ORTHO05D004346 7.7e-44 183.7 407 34.6
Nn7g38253 Nelumbo nucifera HOM05D003806 ORTHO05D004346 1.0e-43 183.3 1381 24.8
Sabra06G0014600 Salix brachista HOM05D003806 ORTHO05D004346 3.8e-43 181.4 1144 31.1
Cfa023525 Carpinus fangiana HOM05D003806 ORTHO05D004346 8.5e-43 180.3 1241 23.7
ClCG07G010910 Citrullus lanatus HOM05D003806 ORTHO05D004346 8.5e-43 180.3 1361 27.7
Duzib133G0409 Durio zibethinus HOM05D003806 ORTHO05D004346 8.5e-43 180.3 378 36.5
vmacro08755 Vaccinium macrocarpon HOM05D003806 ORTHO05D004346 1.5e-42 179.5 1153 32.0
Hma1.2p1_0401F.1_g144710 Hydrangea macrophylla HOM05D003806 ORTHO05D004346 1.9e-42 179.1 1166 33.4
MD17G1128600 Malus domestica HOM05D003806 ORTHO05D004346 1.8e-40 172.6 1202 31.1
Actinidia12513 Actinidia chinensis HOM05D003806 ORTHO05D004346 2.3e-40 172.2 447 32.4
TWI34G1284 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 7.5e-39 167.2 1180 29.9
Gohir.D11G163300 Gossypium hirsutum HOM05D003806 ORTHO05D004346 9.7e-39 166.8 399 37.8
Atru.chr8.989 Acer truncatum HOM05D003806 ORTHO05D004346 2.8e-38 165.2 1249 30.7
CSS0010582 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 8.2e-38 163.7 512 28.7
Dinv09877 Davidia involucrata HOM05D003806 ORTHO05D004346 5.3e-37 161.0 307 40.4
Gorai.007G174000 Gossypium raimondii HOM05D003806 ORTHO05D004346 1.2e-36 159.8 399 37.1
SEGI_00522 Sequoiadendron giganteum HOM05D003806 ORTHO05D004346 1.1e-34 153.3 437 31.1
THA.LOC104816049 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 4.2e-34 151.4 970 27.5
Lj3g0015803 Lotus japonicus HOM05D003806 ORTHO05D004346 7.2e-34 150.6 1131 30.1
Glyma.12G022500 Glycine max HOM05D003806 ORTHO05D004346 6.1e-33 147.5 1174 28.4
Solyc07g043320.3 Solanum lycopersicum HOM05D003806 ORTHO05D004346 1.4e-32 146.4 1394 22.7
Aqoxy1G01455 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 1.8e-32 146.0 1209 29.4
Sed0016792 Sechium edule HOM05D003806 ORTHO05D004346 1.8e-32 146.0 1397 28.2
MD09G1138500 Malus domestica HOM05D003806 ORTHO05D004346 4.0e-32 144.8 1177 25.4
arahy.Tifrunner.gnm1.ann1.LI5V6E Arachis hypogaea HOM05D003806 ORTHO05D004346 1.2e-31 143.3 1156 30.6
Lj1A1039T31 Lonicera japonica HOM05D003806 ORTHO05D004346 1.2e-31 143.3 1161 24.5
Sed0003037 Sechium edule HOM05D003806 ORTHO05D004346 7.5e-31 140.6 329 35.9
HanXRQChr17g0541141 Helianthus annuus HOM05D003806 ORTHO05D004346 1.3e-30 139.8 319 33.5
PGSC0003DMG400011753 Solanum tuberosum HOM05D003806 ORTHO05D004346 2.2e-30 139.0 318 32.1
Gohir.A07G081500 Gossypium hirsutum HOM05D003806 ORTHO05D004346 3.7e-30 138.3 370 32.7
Lalb_Chr19g0139591 Lupinus albus HOM05D003806 ORTHO05D004346 3.7e-30 138.3 321 32.1
Gohir.D07G087100 Gossypium hirsutum HOM05D003806 ORTHO05D004346 4.8e-30 137.9 321 34.6
Rhsim12G0014400 Rhododendron simsii HOM05D003806 ORTHO05D004346 6.3e-30 137.5 1113 27.4
SGA_v2.0_scaffold73G24430 Striga asiatica HOM05D003806 ORTHO05D004346 8.3e-30 137.1 293 33.4
FAN05G0560 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.1e-29 136.7 352 32.4
CSS0042337 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 1.4e-29 136.3 522 30.8
FAN09G2907 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.8e-29 136.0 352 33.0
CsaV3_4G007390 Cucumis sativus L. HOM05D003806 ORTHO05D004346 2.4e-29 135.6 1361 26.4
PSO675G3405 Papaver somniferum HOM05D003806 ORTHO05D004346 3.1e-29 135.2 1408 22.9
Cc05_g00050 Coffea canephora HOM05D003806 ORTHO05D004346 5.4e-29 134.4 1190 27.1
Nitab4.5_0002232g0030 Nicotiana tabacum HOM05D003806 ORTHO05D004346 7.0e-29 134.0 1171 22.8
RcHm_v2.0_Chr2g0153621 Rosa chinensis HOM05D003806 ORTHO05D004346 7.0e-29 134.0 359 32.9
FvH4_6g39571 Fragaria vesca HOM05D003806 ORTHO05D004346 9.1e-29 133.7 364 31.6
Gorai.001G093100 Gossypium raimondii HOM05D003806 ORTHO05D004346 3.5e-28 131.7 268 36.2
Lsat_1_v5_gn_3_34740 Lactuca sativa HOM05D003806 ORTHO05D004346 1.7e-27 129.4 482 27.8
arahy.Tifrunner.gnm1.ann1.TP1CMR Arachis hypogaea HOM05D003806 ORTHO05D004346 2.3e-27 129.0 1156 31.6
Manes.09G072900 Manihot esculenta HOM05D003806 ORTHO05D004346 2.3e-27 129.0 1196 24.4
Gohir.A11G156200 Gossypium hirsutum HOM05D003806 ORTHO05D004346 2.9e-27 128.6 1288 27.4
Ciclev10010914m.g Citrus clementina HOM05D003806 ORTHO05D004346 6.6e-27 127.5 287 34.5
FAN14G1588 Fragaria x ananassa HOM05D003806 ORTHO05D004346 8.6e-27 127.1 364 30.8
FAN14G4911 Fragaria x ananassa HOM05D003806 ORTHO05D004346 8.6e-27 127.1 364 30.8
Peaxi162Scf00393g00413 Petunia axillaris HOM05D003806 ORTHO05D004346 1.5e-26 126.3 279 33.0
Psat7g179080 Pisum sativum HOM05D003806 ORTHO05D004346 2.5e-26 125.6 321 31.8
HPP92_009459 Vanilla planifolia HOM05D003806 ORTHO05D004346 3.3e-26 125.2 1101 25.1
CiPaw.03G113300 Carya illinoinensis HOM05D003806 ORTHO05D004346 9.5e-26 123.6 1213 31.7
FAN02G2860 Fragaria x ananassa HOM05D003806 ORTHO05D004346 3.6e-25 121.7 352 31.2
Haze_13639 Corylus avellana HOM05D003806 ORTHO05D004346 8.0e-25 120.6 1146 25.7
Glyma.11G096400 Glycine max HOM05D003806 ORTHO05D004346 5.7e-23 114.4 1247 29.0
CANSAT64G1444 Cannabis sativa HOM05D003806 ORTHO05D004346 7.5e-23 114.0 1239 28.2
CDE05G0051 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 1.4e-21 109.8 316 30.1
TPR.G21252 Trifolium pratense HOM05D003806 ORTHO05D004346 3.1e-21 108.6 268 31.0
Ca_11242_v3 Cicer arietinum L. HOM05D003806 ORTHO05D004346 5.4e-21 107.8 308 31.2
HanXRQChr06g0171661 Helianthus annuus HOM05D003806 ORTHO05D004346 7.0e-21 107.5 284 32.4
Potri.006G021200 Populus trichocarpa HOM05D003806 ORTHO05D004346 1.2e-20 106.7 1166 33.1
MSTRG.14879 Avicennia marina HOM05D003806 ORTHO05D004346 2.7e-20 105.5 1154 27.2
HanXRQChr15g0470351 Helianthus annuus HOM05D003806 ORTHO05D004346 2.7e-20 105.5 276 34.8
Actinidia12514 Actinidia chinensis HOM05D003806 ORTHO05D004346 1.0e-19 103.6 222 35.1
Lalb_Chr01g0001171 Lupinus albus HOM05D003806 ORTHO05D004346 6.6e-19 100.9 272 27.9
Aqoxy7G02954 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 2.5e-18 99.0 308 34.4
MELO3C016203.2 Cucumis melo HOM05D003806 ORTHO05D004346 2.5e-18 99.0 644 29.3
Thhalv10016148m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 2.5e-18 99.0 140 41.4
CDE02G3965 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 3.3e-18 98.6 316 27.2
unitig_85.g27313 Utricularia gibba HOM05D003806 ORTHO05D004346 3.3e-18 98.6 396 28.0
Eucgr.A00904 Eucalyptus grandis HOM05D003806 ORTHO05D004346 4.3e-18 98.2 1277 25.5
Phvul.011G024500 Phaseolus vulgaris HOM05D003806 ORTHO05D004346 5.6e-18 97.8 466 25.5
CARHR126030 Cardamine hirsuta HOM05D003806 ORTHO05D004346 1.2e-17 96.7 147 37.4
VMungo1127G1373 Vigna mungo HOM05D003806 ORTHO05D004346 2.1e-17 95.9 1171 24.3
Aa31LG5G4290 Aethionema arabicum HOM05D003806 ORTHO05D004346 2.8e-17 95.5 216 33.8
AL4G27610 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 3.6e-17 95.1 147 39.5
Medtr4g076030 Medicago truncatula HOM05D003806 ORTHO05D004346 8.0e-17 94.0 1184 31.2
AT1G05320 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 1.0e-16 93.6 297 30.6
ATR0763G279 Amborella trichopoda HOM05D003806 ORTHO05D004346 1.4e-16 93.2 58 91.4
Zm00001eb070840 Zea mays HOM05D003806 ORTHO05D004346 1.8e-16 92.8 147 42.2
Sp4g14610 Schrenkiella parvula HOM05D003806 ORTHO05D004346 5.2e-16 91.3 272 32.0
unitig_8.g4605 Utricularia gibba HOM05D001005 ORTHO05D000836 6.8e-16 90.9 281 30.6
DCAR_013337 Daucus carota HOM05D003806 ORTHO05D004346 2.0e-15 89.4 256 30.5
Sp1g04190 Schrenkiella parvula HOM05D003806 ORTHO05D004346 2.6e-15 89.0 241 36.1
AUR62009108 Chenopodium quinoa HOM05D003806 ORTHO05D004346 3.4e-15 88.6 203 33.5
Actinidia31596 Actinidia chinensis HOM05D003806 ORTHO05D004346 7.5e-15 87.4 348 27.3
Sopen07g022880 Solanum pennellii HOM05D003806 ORTHO05D004346 9.8e-15 87.0 1375 22.8
QL04p061548 Quercus lobata HOM05D003806 ORTHO05D004346 1.3e-14 86.7 1188 23.1
EL10Ac2g03814 Beta vulgaris HOM05D003806 ORTHO05D004346 1.7e-14 86.3 225 30.7
Potri.016G018700 Populus trichocarpa HOM05D003806 ORTHO05D004346 2.2e-14 85.9 1196 29.4
C05p03650 Brassica napus HOM05D003806 ORTHO05D004346 8.3e-14 84.0 322 29.5
BolC5t29142H Brassica oleracea HOM05D003806 ORTHO05D004346 1.4e-13 83.2 322 29.5
THA.LOC104800972 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 3.2e-13 82.0 267 31.1
SGA_v2.0_scaffold181G39737 Striga asiatica HOM05D003806 ORTHO05D004346 5.4e-13 81.3 301 38.9
AUR62020559 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.2e-12 80.1 273 29.3
AUR62020563 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.2e-12 80.1 273 29.3
C08p51770 Brassica napus HOM05D003806 ORTHO05D004346 2.0e-12 79.3 144 34.0
Carub.0004s1356 Capsella rubella HOM05D003806 ORTHO05D004346 6.0e-12 77.8 119 39.5
BraA10t42674Z Brassica rapa HOM05D003806 ORTHO05D004346 7.8e-12 77.4 349 25.8
Os04g0614650 Oryza sativa ssp. japonica HOM05D003806 ORTHO05D004346 7.8e-12 77.4 218 28.4
Peaxi162Scf00141g01119 Petunia axillaris HOM05D001948 ORTHO05D001873 1.3e-11 76.6 297 27.9
SEGI_03911 Sequoiadendron giganteum HOM05D003806 ORTHO05D002919 1.3e-11 76.6 307 28.7
A10p04030 Brassica napus HOM05D003806 ORTHO05D004346 1.7e-11 76.3 327 25.1
Carub.0001s0463 Capsella rubella HOM05D003806 ORTHO05D004346 6.6e-11 74.3 323 26.9
BcaC02g11341 Brassica carinata HOM05D003806 ORTHO05D001704 1.1e-10 73.6 233 28.8
BraA05t20242Z Brassica rapa HOM05D003806 ORTHO05D004346 1.1e-10 73.6 171 33.9
A05p13020 Brassica napus HOM05D003806 ORTHO05D004346 1.9e-10 72.8 171 32.7
Hund19432 Selenicereus undatus HOM05D003806 ORTHO05D004346 1.9e-10 72.8 183 31.7
C04p17390 Brassica napus HOM05D003806 ORTHO05D004346 7.3e-10 70.9 171 33.9
BolC4t23290H Brassica oleracea HOM05D008171 ORTHO05D006541 7.3e-10 70.9 171 33.9
MD09G1138300 Malus domestica HOM05D003806 ORTHO05D004346 7.3e-10 70.9 186 40.9
Sabra06G0015000 Salix brachista HOM05D003806 ORTHO05D004346 7.3e-10 70.9 869 37.3
Ah.11g044370 Amaranthus hybridus HOM05D003806 ORTHO05D004346 1.6e-09 69.7 137 36.5
Oeu003096.1 Olea europaea HOM05D003806 ORTHO05D004346 3.6e-09 68.6 1180 25.5
AT2G32240 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 6.2e-09 67.8 173 33.5
A09p67490 Brassica napus HOM05D003806 ORTHO05D004346 1.8e-08 66.2 130 32.3
BraA09t42077Z Brassica rapa HOM05D003806 ORTHO05D004346 1.8e-08 66.2 130 32.3
Thhalv10006865m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 1.8e-08 66.2 270 34.1
Zm00001eb430870 Zea mays HOM05D003806 ORTHO05D004346 1.8e-08 66.2 104 42.3
BolC8t52706H Brassica oleracea HOM05D003806 ORTHO05D004346 5.2e-08 64.7 127 33.1
Oeu016857.1 Olea europaea HOM05D003806 ORTHO05D004346 5.2e-08 64.7 45 62.2
ECA246G1737 Erigeron canadensis HOM05D003806 ORTHO05D004346 2.0e-07 62.8 1081 26.5
AL1G15120 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 2.6e-07 62.4 197 30.5
A03p18080 Brassica napus HOM05D003806 ORTHO05D004346 9.8e-07 60.5 119 38.7
Migut.M00098 Erythranthe guttata HOM05D003806 ORTHO05D004346 9.8e-07 60.5 278 26.3
Oeu021135.1 Olea europaea HOM05D003806 ORTHO05D004346 9.8e-07 60.5 43 62.8
Oeu048050.1 Olea europaea HOM05D003806 ORTHO05D004346 9.8e-07 60.5 401 33.4
Sc23g0004300 Simmondsia chinensis HOM05D003806 ORTHO05D004346 1.7e-06 59.7 372 25.5
CANSAT64G1938 Cannabis sativa HOM05D003806 ORTHO05D004346 8.3e-06 57.4 79 45.6


User provided reference genes

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