Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0763G045 Amborella trichopoda HOM05D005056 ORTHO05D006487 5.6e-87 324.3 172 100.0
GSVIVG01038137001 Vitis vinifera HOM05D005056 ORTHO05D006487 7.4e-39 164.5 178 56.2
MBI18_g06087_MAGBIO Magnolia biondii HOM05D005056 ORTHO05D006487 2.8e-38 162.5 185 56.8
PGR142G4138 Punica granatum HOM05D005056 ORTHO05D006487 1.1e-37 160.6 178 56.2
Eucgr.H00317 Eucalyptus grandis HOM05D005056 ORTHO05D006487 3.4e-36 155.6 176 53.4
Prupe.1G206800 Prunus persica HOM05D005056 ORTHO05D006487 1.3e-35 153.7 182 53.8
MD17G1177700 Malus domestica HOM05D005056 ORTHO05D006487 1.7e-35 153.3 175 56.0
TAR636G2681 Trochodendron aralioides HOM05D005056 ORTHO05D006487 1.7e-35 153.3 190 52.1
Atru.chr3.3232 Acer truncatum HOM05D005056 ORTHO05D006487 3.8e-35 152.1 177 52.0
Dinv04468 Davidia involucrata HOM05D005056 ORTHO05D006487 3.8e-35 152.1 176 55.7
Hma1.2p1_0150F.1_g066780 Hydrangea macrophylla HOM05D005056 ORTHO05D006487 3.8e-35 152.1 177 55.4
SEGI_33254 Sequoiadendron giganteum HOM05D005056 ORTHO05D006487 3.8e-35 152.1 169 55.0
FAN18G4484 Fragaria x ananassa HOM05D005056 ORTHO05D006487 4.9e-35 151.8 172 53.5
FvH4_5g27692 Fragaria vesca HOM05D005056 ORTHO05D006487 6.5e-35 151.4 171 53.8
FAN13G0846 Fragaria x ananassa HOM05D005056 ORTHO05D006487 6.5e-35 151.4 171 53.8
FAN04G0894 Fragaria x ananassa HOM05D005056 ORTHO05D006487 1.9e-34 149.8 171 53.2
Sc08g0000580 Simmondsia chinensis HOM05D005056 ORTHO05D006487 1.9e-34 149.8 176 54.0
RcHm_v2.0_Chr7g0219421 Rosa chinensis HOM05D005056 ORTHO05D006487 3.2e-34 149.1 175 53.7
Hma1.2p1_0150F.1_g066790 Hydrangea macrophylla HOM05D005056 ORTHO05D006487 4.2e-34 148.7 168 54.8
Atru.chr4.1428 Acer truncatum HOM05D005056 ORTHO05D006487 1.2e-33 147.1 177 49.2
Ciclev10019145m.g Citrus clementina HOM05D005056 ORTHO05D006487 1.2e-33 147.1 179 51.4
FAN08G2023 Fragaria x ananassa HOM05D005056 ORTHO05D006487 1.6e-33 146.7 171 52.6
CSS0024905 Camellia sinensis var. sinensis HOM05D005056 ORTHO05D006487 2.1e-33 146.4 181 53.6
Sed0010490 Sechium edule HOM05D005056 ORTHO05D006487 2.1e-33 146.4 170 52.9
vmacro03868 Vaccinium macrocarpon HOM05D005056 ORTHO05D006487 2.7e-33 146.0 169 51.5
Os01g0104800 Oryza sativa ssp. japonica HOM05D005056 ORTHO05D006487 6.0e-33 144.8 183 49.2
Cc03_g13950 Coffea canephora HOM05D005056 ORTHO05D006487 1.8e-32 143.3 184 51.1
QL93p1902_0036 Quercus lobata HOM05D005056 ORTHO05D006487 1.8e-32 143.3 175 52.0
TWI38G0332 Tripterygium wilfordii HOM05D005056 ORTHO05D006487 3.0e-32 142.5 183 49.7
DCAR_019081 Daucus carota HOM05D005056 ORTHO05D006487 6.7e-32 141.4 189 49.7
Sabra13G0104700 Salix brachista HOM05D005056 ORTHO05D006487 8.7e-32 141.0 170 50.0
Sabra13G0105000 Salix brachista HOM05D005056 ORTHO05D006487 8.7e-32 141.0 170 50.0
Sabra13G0105200 Salix brachista HOM05D005056 ORTHO05D006487 8.7e-32 141.0 170 50.0
Sabra13G0105300 Salix brachista HOM05D005056 ORTHO05D006487 8.7e-32 141.0 170 50.0
CDE04G2996 Ceratophyllum demersum HOM05D005056 ORTHO05D006487 3.3e-31 139.0 177 46.9
SGA_v2.0_scaffold289G47281 Striga asiatica HOM05D005056 ORTHO05D006487 4.3e-31 138.7 175 47.4
Migut.N03070 Erythranthe guttata HOM05D005056 ORTHO05D006487 5.7e-31 138.3 178 49.4
Rhsim13G0194600 Rhododendron simsii HOM05D005056 ORTHO05D006656 7.4e-31 137.9 176 50.6
Haze_01366 Corylus avellana HOM05D005056 ORTHO05D006487 1.3e-30 137.1 176 47.2
Sopen11g029990 Solanum pennellii HOM05D005056 ORTHO05D006487 2.2e-30 136.3 176 48.9
Peaxi162Scf00568g00417 Petunia axillaris HOM05D005056 ORTHO05D006487 3.7e-30 135.6 176 48.3
CSS0004898 Camellia sinensis var. sinensis HOM05D005056 ORTHO05D006487 4.8e-30 135.2 174 52.9
ClCG06G001090 Citrullus lanatus HOM05D005056 ORTHO05D006487 6.3e-30 134.8 174 51.1
MELO3C022426.2 Cucumis melo HOM05D005056 ORTHO05D006487 6.3e-30 134.8 176 49.4
SalBow1G2014 Salvia bowleyana HOM05D005056 ORTHO05D006487 8.2e-30 134.4 176 47.7
VMungo0251G2998 Vigna mungo HOM05D005056 ORTHO05D006487 8.2e-30 134.4 183 47.5
Nitab4.5_0002129g0080 Nicotiana tabacum HOM05D005056 ORTHO05D006487 1.1e-29 134.0 175 47.4
Solyc11g072390.2 Solanum lycopersicum HOM05D005056 ORTHO05D006487 1.4e-29 133.7 176 48.3
Sopen11g030040 Solanum pennellii HOM05D005056 ORTHO05D006487 1.4e-29 133.7 176 48.3
CsaV3_6G007040 Cucumis sativus L. HOM05D005056 ORTHO05D006487 1.8e-29 133.3 176 50.0
HPP92_014516 Vanilla planifolia HOM05D005056 ORTHO05D006487 1.8e-29 133.3 175 50.3
Gorai.012G150100 Gossypium raimondii HOM05D005056 ORTHO05D006487 2.4e-29 132.9 184 45.1
Solyc11g072320.3 Solanum lycopersicum HOM05D005056 ORTHO05D006487 2.4e-29 132.9 176 47.7
Nitab4.5_0001802g0080 Nicotiana tabacum HOM05D005056 ORTHO05D006487 3.1e-29 132.5 175 48.0
QL10p054991 Quercus lobata HOM05D005056 ORTHO05D006487 3.1e-29 132.5 181 48.1
Glyma.02G137100 Glycine max HOM05D005056 ORTHO05D006487 4.1e-29 132.1 177 49.7
Cpa.g.sc114.8 Carica papaya HOM05D005056 ORTHO05D006487 5.3e-29 131.7 189 48.1
Manes.16G069500 Manihot esculenta HOM05D005056 ORTHO05D006487 5.3e-29 131.7 178 48.3
Aa31LG1G25370 Aethionema arabicum HOM05D005056 ORTHO05D006487 9.0e-29 131.0 180 47.2
Potri.013G125800 Populus trichocarpa HOM05D005056 ORTHO05D006487 9.0e-29 131.0 191 44.5
SMO358G0450 Selaginella moellendorffii HOM05D005056 ORTHO05D006487 9.0e-29 131.0 167 51.5
EL10Ac9g21710 Beta vulgaris HOM05D005056 ORTHO05D006487 1.2e-28 130.6 180 48.3
Glyma.07G208300 Glycine max HOM05D005056 ORTHO05D006487 2.0e-28 129.8 178 50.0
Oeu018048.1 Olea europaea HOM05D005056 ORTHO05D006487 2.6e-28 129.4 164 51.8
arahy.Tifrunner.gnm1.ann1.X1H480 Arachis hypogaea HOM05D005056 ORTHO05D006487 3.4e-28 129.0 181 44.8
Lj1g0023120 Lotus japonicus HOM05D005056 ORTHO05D006487 3.4e-28 129.0 179 46.9
Hund06242 Selenicereus undatus HOM05D005056 ORTHO05D006487 3.4e-28 129.0 175 49.7
CANSAT56G3616 Cannabis sativa HOM05D005056 ORTHO05D006487 4.5e-28 128.6 183 45.9
CAN.G308.62 Capsicum annuum HOM05D005056 ORTHO05D006487 4.5e-28 128.6 176 46.6
Duzib128G0002 Durio zibethinus HOM05D005056 ORTHO05D006487 4.5e-28 128.6 186 45.7
arahy.Tifrunner.gnm1.ann1.K7ZH1T Arachis hypogaea HOM05D005056 ORTHO05D006487 1.0e-27 127.5 181 44.2
PSO170G2549 Papaver somniferum HOM05D005056 ORTHO05D006487 1.0e-27 127.5 187 44.4
COL.COLO4_09146 Corchorus olitorius HOM05D005056 ORTHO05D006487 1.3e-27 127.1 181 45.9
Gohir.A04G120600 Gossypium hirsutum HOM05D005056 ORTHO05D006487 1.7e-27 126.7 184 44.6
AagrBONN_evm.TU.Sc2ySwM_228.4407 Anthoceros agrestis HOM05D005056 ORTHO05D006403 3.8e-27 125.6 169 49.1
Pp3c13_22260 Physcomitrium patens HOM05D005056 ORTHO05D006487 8.5e-27 124.4 171 48.0
Zm00001eb034060 Zea mays HOM05D005056 ORTHO05D006487 1.1e-26 124.0 178 44.9
HanXRQChr14g0439801 Helianthus annuus HOM05D005056 ORTHO05D006487 1.9e-26 123.2 182 46.7
Lj4g0012801 Lotus japonicus HOM05D005056 ORTHO05D006487 2.5e-26 122.9 174 46.6
Thecc.05G215400 Theobroma cacao HOM05D005056 ORTHO05D006487 7.2e-26 121.3 183 44.3
AL4G42470 Arabidopsis lyrata HOM05D005056 ORTHO05D006487 9.3e-26 120.9 189 43.9
Actinidia11444 Actinidia chinensis HOM05D005056 ORTHO05D006487 1.6e-25 120.2 163 47.2
Gohir.D04G162100 Gossypium hirsutum HOM05D005056 ORTHO05D006487 2.7e-25 119.4 184 44.6
PSO302G0034 Papaver somniferum HOM05D005056 ORTHO05D006487 3.6e-25 119.0 185 43.8
Phvul.003G296300 Phaseolus vulgaris HOM05D005056 ORTHO05D006487 3.6e-25 119.0 181 44.8
Ah.01g019270 Amaranthus hybridus HOM05D005056 ORTHO05D006487 6.1e-25 118.2 178 47.2
Medtr4g087270 Medicago truncatula HOM05D005056 ORTHO05D006487 7.9e-25 117.9 181 44.8
Lalb_Chr16g0384481 Lupinus albus HOM05D005056 ORTHO05D006487 1.3e-24 117.1 177 44.1
SMO367G0368 Selaginella moellendorffii HOM05D005056 ORTHO05D006487 1.3e-24 117.1 168 47.6
Mapoly0041s0093 Marchantia polymorpha HOM05D005056 ORTHO05D006403 2.3e-24 116.3 168 47.6
AUR62016753 Chenopodium quinoa HOM05D005056 ORTHO05D006487 3.9e-24 115.5 182 45.6
TPR.G1297 Trifolium pratense HOM05D005056 ORTHO05D006487 1.3e-22 110.5 168 44.6
Carub.0004s2618 Capsella rubella HOM05D005056 ORTHO05D006487 3.7e-22 109.0 183 43.2
TPR.G23553 Trifolium pratense HOM05D005056 ORTHO05D006487 3.1e-21 105.9 182 43.4
CARHR138830 Cardamine hirsuta HOM05D005056 ORTHO05D006487 4.1e-21 105.5 181 41.4
Lsat_1_v5_gn_2_46281 Lactuca sativa HOM05D005056 ORTHO05D006487 9.1e-21 104.4 179 45.8
Sp4g25750 Schrenkiella parvula HOM05D005056 ORTHO05D006487 1.5e-20 103.6 184 42.9
BcaB01g03369 Brassica carinata HOM05D005056 ORTHO05D006487 3.4e-20 102.4 184 42.4
AT2G43650 Arabidopsis thaliana HOM05D005056 ORTHO05D006487 4.5e-20 102.1 181 40.3
C03p29070 Brassica napus HOM05D005056 ORTHO05D006487 1.3e-19 100.5 190 42.1
A03p24390 Brassica napus HOM05D005056 ORTHO05D006487 2.2e-19 99.8 190 42.1
ECA238G2929 Erigeron canadensis HOM05D005056 ORTHO05D006487 2.2e-19 99.8 180 40.0
BcaC01g05222 Brassica carinata HOM05D005056 ORTHO05D006487 2.9e-19 99.4 190 41.6
Psat7g121360 Pisum sativum HOM05D005056 ORTHO05D006487 8.5e-19 97.8 180 41.7
Aqoxy5G00514 Aquilegia oxysepala HOM05D005056 ORTHO05D006487 1.4e-18 97.1 170 40.6
FAN12G0411 Fragaria x ananassa HOM05D005056 ORTHO05D006487 2.5e-18 96.3 130 50.8
FAN12G0483 Fragaria x ananassa HOM05D005056 ORTHO05D006487 2.5e-18 96.3 130 50.8
THA.LOC104803998 Tarenaya hassleriana HOM05D005056 ORTHO05D006487 1.6e-17 93.6 191 38.2
BolC4t28563H Brassica oleracea HOM05D005056 ORTHO05D006487 4.7e-17 92.0 173 43.4
CBR_g34512 Chara braunii HOM05D005056 ORTHO05D006403 5.1e-16 88.6 172 38.4
Ca_18642_v3 Cicer arietinum L. HOM05D005056 ORTHO05D006487 5.1e-16 88.6 163 42.9
Oeu018046.1 Olea europaea HOM05D005056 ORTHO05D006487 2.0e-15 86.7 64 68.8
C04p70610 Brassica napus HOM05D005056 ORTHO05D006487 1.3e-14 84.0 173 42.2
FvH4_4g18081 Fragaria vesca HOM05D005056 ORTHO05D006487 2.2e-14 83.2 117 51.3
BolC3t15261H Brassica oleracea HOM05D000026 ORTHO05D000094 2.8e-14 82.8 179 39.7
BraA03t11648Z Brassica rapa HOM05D005056 ORTHO05D006487 2.8e-14 82.8 179 39.7
BraA04t18751Z Brassica rapa HOM05D005056 ORTHO05D006487 3.7e-14 82.4 155 44.5
A04p32930 Brassica napus HOM05D005056 ORTHO05D006487 8.2e-14 81.3 161 43.5
CiPaw.02G100700 Carya illinoinensis HOM05D005056 ORTHO05D006487 1.5e-12 77.0 155 41.3
BcaB06g29334 Brassica carinata HOM05D005056 ORTHO05D006487 1.0e-11 74.3 169 39.6
A04p32940 Brassica napus HOM05D005056 ORTHO05D001240 1.4e-10 70.5 130 41.5
AL677U10020 Arabidopsis lyrata HOM05D005056 ORTHO05D006487 1.9e-10 70.1 60 60.0
AUR62011304 Chenopodium quinoa HOM05D005056 ORTHO05D006487 4.2e-10 68.9 181 37.0
AUR62016951 Chenopodium quinoa HOM05D005056 ORTHO05D006487 4.2e-10 68.9 181 35.4
C04p70630 Brassica napus HOM05D005056 ORTHO05D006487 5.5e-10 68.6 97 47.4
BolC4t28565H Brassica oleracea HOM05D005056 ORTHO05D006487 5.5e-10 68.6 97 47.4
AT3G28230 Arabidopsis thaliana HOM05D005056 ORTHO05D006487 1.2e-09 67.4 70 54.3
MCO16G233 Micromonas commoda HOM05D005594 ORTHO05D006403 8.0e-09 64.7 172 32.0
AL5G17740 Arabidopsis lyrata HOM05D005056 ORTHO05D006487 1.8e-08 63.5 86 46.5
QL10p055605 Quercus lobata HOM05D005056 ORTHO05D006487 2.3e-08 63.2 110 42.7
Cfa015266 Carpinus fangiana HOM05D005056 ORTHO05D006487 5.7e-07 58.5 88 38.6
Eucgr.H00313 Eucalyptus grandis HOM05D005056 ORTHO05D006487 9.7e-07 57.8 82 43.9
Cre09.g394399 Chlamydomonas reinhardtii HOM05D005056 ORTHO05D006403 3.7e-06 55.8 70 45.7


User provided reference genes

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