Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0757G107 Amborella trichopoda HOM05D005908 ORTHO05D007235 1.7e-134 482.6 239 100.0
MBI12_g29759_MAGBIO Magnolia biondii HOM05D005908 ORTHO05D007235 3.7e-81 305.4 228 63.6
Nn6g34248 Nelumbo nucifera HOM05D005908 ORTHO05D007235 9.5e-77 290.8 232 63.8
TAR375G0795 Trochodendron aralioides HOM05D005908 ORTHO05D007235 1.2e-76 290.4 231 62.8
Dinv35179 Davidia involucrata HOM05D005908 ORTHO05D007235 2.1e-76 289.7 232 60.8
PSO478G3277 Papaver somniferum HOM05D005908 ORTHO05D007235 2.3e-75 286.2 232 61.6
GSVIVG01010617001 Vitis vinifera HOM05D005908 ORTHO05D007235 3.0e-75 285.8 232 58.6
Ciclev10005584m.g Citrus clementina HOM05D005908 ORTHO05D007235 7.5e-74 281.2 230 59.1
PSO782G1770 Papaver somniferum HOM05D005908 ORTHO05D007235 9.8e-74 280.8 234 59.8
Actinidia32893 Actinidia chinensis HOM05D005908 ORTHO05D007235 2.2e-73 279.6 232 58.6
Sed0015226 Sechium edule HOM05D005908 ORTHO05D007235 2.9e-73 279.3 236 59.7
vmacro08977 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 4.9e-73 278.5 231 58.0
MSTRG.8762 Avicennia marina HOM05D005908 ORTHO05D007235 2.4e-72 276.2 232 56.0
Hma1.2p1_0270F.1_g108430 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 5.4e-72 275.0 229 57.6
TWI23G0151 Tripterygium wilfordii HOM05D005908 ORTHO05D007235 5.4e-72 275.0 231 59.3
ClCG05G007830 Citrullus lanatus HOM05D005908 ORTHO05D007235 7.0e-72 274.6 238 60.1
Atru.chr1.515 Acer truncatum HOM05D005908 ORTHO05D007235 9.2e-72 274.2 229 57.2
CsaV3_3G016830 Cucumis sativus L. HOM05D005908 ORTHO05D007235 2.7e-71 272.7 238 58.8
Cfa008281 Carpinus fangiana HOM05D005908 ORTHO05D007235 3.5e-71 272.3 227 58.1
CANSAT21G0021 Cannabis sativa HOM05D005908 ORTHO05D007235 4.6e-71 271.9 233 58.8
RcHm_v2.0_Chr1g0376741 Rosa chinensis HOM05D005908 ORTHO05D007235 4.6e-71 271.9 230 59.6
CANSAT21G0323 Cannabis sativa HOM05D005908 ORTHO05D007235 7.8e-71 271.2 233 58.8
Cpa.g.sc107.9 Carica papaya HOM05D005908 ORTHO05D007235 7.8e-71 271.2 231 57.1
Lj1A993G71 Lonicera japonica HOM05D005908 ORTHO05D007235 7.8e-71 271.2 233 55.8
CiPaw.04G067300 Carya illinoinensis HOM05D005908 ORTHO05D007235 2.3e-70 269.6 233 56.2
Oeu030124.1 Olea europaea HOM05D005908 ORTHO05D007235 3.9e-70 268.9 238 52.9
Potri.015G138400 Populus trichocarpa HOM05D005908 ORTHO05D007235 3.9e-70 268.9 231 57.6
Thecc.03G170900 Theobroma cacao HOM05D005908 ORTHO05D007235 5.0e-70 268.5 231 57.6
Lsat_1_v5_gn_2_133120 Lactuca sativa HOM05D005908 ORTHO05D007235 6.6e-70 268.1 228 59.2
Manes.06G144000 Manihot esculenta HOM05D005908 ORTHO05D007235 6.6e-70 268.1 230 59.6
Eucgr.K00226 Eucalyptus grandis HOM05D005908 ORTHO05D007235 8.6e-70 267.7 231 57.1
Gohir.D09G040800 Gossypium hirsutum HOM05D005908 ORTHO05D007235 1.1e-69 267.3 230 58.3
Sabra15G0149500 Salix brachista HOM05D005908 ORTHO05D007235 1.5e-69 266.9 231 57.1
TWI39G0968 Tripterygium wilfordii HOM05D005908 ORTHO05D007235 1.9e-69 266.5 231 57.1
HanXRQChr07g0206851 Helianthus annuus HOM05D005908 ORTHO05D007235 2.5e-69 266.2 235 59.1
SGA_v2.0_scaffold2G01076 Striga asiatica HOM05D005908 ORTHO05D007235 4.3e-69 265.4 222 56.3
Aqoxy7G00441 Aquilegia oxysepala HOM05D005908 ORTHO05D007235 5.6e-69 265.0 232 57.3
COL.COLO4_14265 Corchorus olitorius HOM05D005908 ORTHO05D007235 5.6e-69 265.0 233 55.4
Gorai.006G046700 Gossypium raimondii HOM05D005908 ORTHO05D007235 5.6e-69 265.0 232 56.9
MD13G1243600 Malus domestica HOM05D005908 ORTHO05D007235 5.6e-69 265.0 233 54.1
FAN03G0397 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.6e-68 263.5 231 57.1
DCAR_009351 Daucus carota HOM05D005908 ORTHO05D007235 2.1e-68 263.1 228 54.4
FvH4_7g15530 Fragaria vesca HOM05D005908 ORTHO05D007235 2.1e-68 263.1 231 57.1
FAN06G2086 Fragaria x ananassa HOM05D005908 ORTHO05D007235 2.1e-68 263.1 231 57.1
FAN01G2408 Fragaria x ananassa HOM05D005908 ORTHO05D007235 2.8e-68 262.7 231 57.1
QL09p014976 Quercus lobata HOM05D005908 ORTHO05D007235 3.6e-68 262.3 232 56.0
Cc10_g10330 Coffea canephora HOM05D005908 ORTHO05D007235 6.2e-68 261.5 232 57.8
FAN10G2728 Fragaria x ananassa HOM05D005908 ORTHO05D007235 6.2e-68 261.5 231 56.7
FAN06G0652 Fragaria x ananassa HOM05D005908 ORTHO05D007235 8.0e-68 261.2 231 56.3
FAN10G3232 Fragaria x ananassa HOM05D005908 ORTHO05D007235 5.2e-67 258.5 231 56.3
CDE11G0458 Ceratophyllum demersum HOM05D003547 ORTHO05D004236 1.2e-66 257.3 228 56.1
ECA238G1518 Erigeron canadensis HOM05D005908 ORTHO05D007235 1.2e-66 257.3 231 57.1
CAN.G548.2 Capsicum annuum HOM05D005908 ORTHO05D007235 2.6e-66 256.1 232 55.2
Aa31LG3G8480 Aethionema arabicum HOM05D005908 ORTHO05D007235 3.4e-66 255.8 226 54.9
Rhsim04G0117700 Rhododendron simsii HOM05D005908 ORTHO05D007235 3.4e-66 255.8 284 47.2
Psat1g113160 Pisum sativum HOM05D005908 ORTHO05D007235 1.3e-65 253.8 232 55.6
Hund04705 Selenicereus undatus HOM05D005908 ORTHO05D007235 1.3e-65 253.8 231 54.1
VMungo0464G0636 Vigna mungo HOM05D005908 ORTHO05D007235 1.3e-65 253.8 233 53.6
Zm00001eb021390 Zea mays HOM05D005908 ORTHO05D007235 1.7e-65 253.4 228 53.9
PGSC0003DMG402014313 Solanum tuberosum HOM05D005908 ORTHO05D007235 2.9e-65 252.7 232 54.3
THA.LOC104811995 Tarenaya hassleriana HOM05D005908 ORTHO05D007235 2.9e-65 252.7 227 54.2
BcaC01g06164 Brassica carinata HOM05D005908 ORTHO05D007235 3.7e-65 252.3 227 54.2
C03p18500 Brassica napus HOM05D005908 ORTHO05D007235 3.7e-65 252.3 227 54.2
BolC3t14247H Brassica oleracea HOM05D005908 ORTHO05D007235 3.7e-65 252.3 227 54.2
AT5G52110 Arabidopsis thaliana HOM05D005908 ORTHO05D007235 4.9e-65 251.9 227 55.1
Glyma.16G198400 Glycine max HOM05D005908 ORTHO05D007235 4.9e-65 251.9 233 54.1
CARHR265040 Cardamine hirsuta HOM05D005908 ORTHO05D007235 6.4e-65 251.5 227 54.6
Solyc03g026200.4 Solanum lycopersicum HOM05D005908 ORTHO05D007235 8.3e-65 251.1 232 53.9
Sopen03g005070 Solanum pennellii HOM05D005908 ORTHO05D007235 8.3e-65 251.1 232 53.9
Carub.0008s1219 Capsella rubella HOM05D005908 ORTHO05D007235 1.1e-64 250.8 227 55.5
Migut.F00374 Erythranthe guttata HOM05D005908 ORTHO05D007235 1.4e-64 250.4 234 52.1
BraA03t10874Z Brassica rapa HOM05D005908 ORTHO05D007235 3.2e-64 249.2 227 53.3
TPR.G5821 Trifolium pratense HOM05D005908 ORTHO05D007235 3.2e-64 249.2 232 53.4
A03p15840 Brassica napus HOM05D005908 ORTHO05D007235 4.1e-64 248.8 227 53.3
Lj4g0016789 Lotus japonicus HOM05D005908 ORTHO05D007235 4.1e-64 248.8 232 53.9
vmacro06719 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 4.1e-64 248.8 244 52.5
Sp6g14360 Schrenkiella parvula HOM05D005908 ORTHO05D007235 2.7e-63 246.1 227 53.3
SpUn0060_0050 Schrenkiella parvula HOM05D005908 ORTHO05D007235 2.7e-63 246.1 227 53.3
SalBow1G0690 Salvia bowleyana HOM05D005908 ORTHO05D007235 3.5e-63 245.7 234 51.3
AL8G26480 Arabidopsis lyrata HOM05D005908 ORTHO05D007235 6.0e-63 245.0 227 53.3
Lj2g0007665 Lotus japonicus HOM05D005908 ORTHO05D007235 7.8e-63 244.6 232 53.0
BcaB01g04184 Brassica carinata HOM05D005908 ORTHO05D007235 1.0e-62 244.2 227 52.9
Lj2g0024281 Lotus japonicus HOM05D005908 ORTHO05D007235 1.0e-62 244.2 232 53.9
HPP92_001363 Vanilla planifolia HOM05D005908 ORTHO05D007235 1.0e-62 244.2 229 52.8
Lalb_Chr01g0009141 Lupinus albus HOM05D005908 ORTHO05D007235 2.3e-62 243.0 233 52.4
Sc25g0000390 Simmondsia chinensis HOM05D005908 ORTHO05D007235 2.3e-62 243.0 229 53.3
Thhalv10014339m.g Eutrema salsugineum HOM05D005908 ORTHO05D007235 8.6e-62 241.1 227 52.0
Ah.13g068320 Amaranthus hybridus HOM05D005908 ORTHO05D007235 7.3e-61 238.0 230 51.3
arahy.Tifrunner.gnm1.ann1.K8NCYF Arachis hypogaea HOM05D005908 ORTHO05D007235 1.2e-60 237.3 246 49.2
arahy.Tifrunner.gnm1.ann1.580JC2 Arachis hypogaea HOM05D005908 ORTHO05D007235 1.4e-59 233.8 246 48.4
AUR62016029 Chenopodium quinoa HOM05D005908 ORTHO05D007235 7.5e-58 228.0 236 49.2
Hma1.2p1_0270F.1_g108420 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 1.3e-57 227.3 229 50.7
Nitab4.5_0005024g0020 Nicotiana tabacum HOM05D005908 ORTHO05D007235 2.1e-55 219.9 232 50.4
Prupe.1G077000 Prunus persica HOM05D005908 ORTHO05D007235 5.1e-54 215.3 233 47.6
Nitab4.5_0001083g0110 Nicotiana tabacum HOM05D005908 ORTHO05D007235 3.3e-53 212.6 226 51.8
Haze_13753 Corylus avellana HOM05D005908 ORTHO05D007235 1.2e-52 210.7 166 59.6
Gohir.A09G040000 Gossypium hirsutum HOM05D005908 ORTHO05D007235 2.4e-51 206.5 164 59.8
Phvul.004G121600 Phaseolus vulgaris HOM05D005908 ORTHO05D007235 1.3e-49 200.7 166 56.6
AUR62021234 Chenopodium quinoa HOM05D005908 ORTHO05D007235 1.1e-48 197.6 187 51.3
SEGI_20513 Sequoiadendron giganteum HOM05D005908 ORTHO05D007235 2.7e-47 193.0 235 44.7
unitig_37.g11958 Utricularia gibba HOM05D005908 ORTHO05D007235 1.5e-45 187.2 186 47.3
EL10Ac3g05695 Beta vulgaris HOM05D005908 ORTHO05D007235 3.3e-45 186.0 202 49.0
MELO3C006877.2 Cucumis melo HOM05D005908 ORTHO05D007235 5.2e-43 178.7 234 43.6
Peaxi162Scf00915g00250 Petunia axillaris HOM05D005908 ORTHO05D007235 1.5e-42 177.2 225 45.3
HPP92_001354 Vanilla planifolia HOM05D005908 ORTHO05D007235 2.9e-41 172.9 229 44.5
vmacro06721 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 1.4e-40 170.6 209 45.9
Mapoly0051s0108 Marchantia polymorpha HOM05D005908 ORTHO05D007235 6.0e-39 165.2 228 40.4
AagrBONN_evm.TU.Sc2ySwM_228.723 Anthoceros agrestis HOM05D005908 ORTHO05D007235 5.4e-32 142.1 223 35.0
Pp3c13_15400 Physcomitrium patens HOM05D005908 ORTHO05D007235 8.7e-30 134.8 224 31.7
CSS0026196 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 3.3e-29 132.9 99 58.6
CSS0048064 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 3.3e-29 132.9 99 58.6
SMO364G0827 Selaginella moellendorffii HOM05D005908 ORTHO05D007235 5.6e-29 132.1 226 36.3
FAN03G3234 Fragaria x ananassa HOM05D005908 ORTHO05D007235 4.0e-27 125.9 167 43.1
FAN03G2347 Fragaria x ananassa HOM05D005908 ORTHO05D007235 7.6e-26 121.7 167 43.1
Lsat_1_v5_gn_2_133160 Lactuca sativa HOM05D005908 ORTHO05D007235 3.2e-24 116.3 100 58.0
SEGI_01877 Sequoiadendron giganteum HOM05D005908 ORTHO05D007235 2.7e-23 113.2 124 49.2
SMO353G0077 Selaginella moellendorffii HOM05D005908 ORTHO05D007235 1.5e-21 107.5 228 32.5
Actinidia34081 Actinidia chinensis HOM05D005908 ORTHO05D007235 1.4e-19 100.9 144 40.3
Cre12.g537850 Chlamydomonas reinhardtii HOM05D005908 ORTHO05D007235 2.0e-18 97.1 245 31.0
MCO01G567 Micromonas commoda HOM05D005908 ORTHO05D007235 4.9e-17 92.4 237 30.4
Dinv28477 Davidia involucrata HOM05D005908 ORTHO05D007235 3.2e-16 89.7 68 67.6
CSS0007682 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 5.5e-16 89.0 69 65.2
CBR_g58789 Chara braunii HOM05D005908 ORTHO05D007235 1.6e-15 87.4 143 35.0
FAN01G0300 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.0e-14 84.7 124 37.9
MD16G1250200 Malus domestica HOM05D005908 ORTHO05D007235 1.0e-14 84.7 74 52.7
MELO3C031805.2 Cucumis melo HOM05D005908 ORTHO05D007235 5.0e-09 65.9 68 54.4
FvH4_7g29023 Fragaria vesca HOM05D005908 ORTHO05D007235 8.5e-09 65.1 66 56.1
Hma1.2p1_0010F.1_g006900 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 1.0e-06 58.2 58 53.4


User provided reference genes

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