Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0751G163 Amborella trichopoda HOM05D005990 ORTHO05D007908 1.5e-190 669.5 357 100.0
Nn1g06745 Nelumbo nucifera HOM05D005990 ORTHO05D007908 8.7e-127 457.6 361 71.5
TAR626G1157 Trochodendron aralioides HOM05D005990 ORTHO05D007908 1.5e-123 446.8 359 70.5
QL08p018038 Quercus lobata HOM05D005990 ORTHO05D007908 1.0e-122 444.1 364 68.4
Cfa020505 Carpinus fangiana HOM05D005990 ORTHO05D007908 5.0e-122 441.8 363 68.9
Manes.03G116500 Manihot esculenta HOM05D005990 ORTHO05D007908 5.0e-122 441.8 308 77.3
Potri.001G406700 Populus trichocarpa HOM05D005990 ORTHO05D007908 6.5e-122 441.4 356 69.9
PGR031G1979 Punica granatum HOM05D005990 ORTHO05D007908 6.5e-122 441.4 328 75.3
COL.COLO4_09478 Corchorus olitorius HOM05D005990 ORTHO05D007908 1.9e-121 439.9 297 79.8
FvH4_3g20940 Fragaria vesca HOM05D005990 ORTHO05D007908 1.9e-121 439.9 364 67.9
Actinidia35278 Actinidia chinensis HOM05D005990 ORTHO05D007908 5.5e-121 438.3 329 72.9
HanXRQChr05g0156471 Helianthus annuus HOM05D005990 ORTHO05D007908 7.2e-121 438.0 262 87.0
CiPaw.11G176500 Carya illinoinensis HOM05D005990 ORTHO05D007908 1.6e-120 436.8 332 73.2
Prupe.4G189900 Prunus persica HOM05D005990 ORTHO05D007908 2.1e-120 436.4 318 74.2
Lsat_1_v5_gn_5_6860 Lactuca sativa HOM05D005990 ORTHO05D007908 3.6e-120 435.6 335 71.6
GSVIVG01014430001 Vitis vinifera HOM05D005990 ORTHO05D007908 6.1e-120 434.9 358 67.6
Cpa.g.sc80.114 Carica papaya HOM05D005990 ORTHO05D007908 7.9e-120 434.5 338 72.5
Dinv22366 Davidia involucrata HOM05D005990 ORTHO05D007908 1.4e-119 433.7 314 76.1
RhsimUnG0258900 Rhododendron simsii HOM05D005990 ORTHO05D007908 1.8e-119 433.3 322 73.9
CSS0030462 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D007908 3.0e-119 432.6 303 77.6
Duzib213G0189 Durio zibethinus HOM05D005990 ORTHO05D007908 3.9e-119 432.2 294 79.9
Thecc.07G071400 Theobroma cacao HOM05D005990 ORTHO05D007908 3.9e-119 432.2 355 69.0
FAN11G3728 Fragaria x ananassa HOM05D005990 ORTHO05D007908 5.1e-119 431.8 362 68.0
RcHm_v2.0_Chr5g0035361 Rosa chinensis HOM05D005990 ORTHO05D007908 5.1e-119 431.8 309 76.7
Hma1.2p1_1143F.1_g261060 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 6.7e-119 431.4 261 86.2
ECA246G2706 Erigeron canadensis HOM05D005990 ORTHO05D007908 8.8e-119 431.0 293 79.9
Glyma.06G254100 Glycine max HOM05D005990 ORTHO05D007908 1.5e-118 430.3 302 77.5
MELO3C016553.2 Cucumis melo HOM05D005990 ORTHO05D007908 2.6e-118 429.5 370 67.0
Sabra16G0270400 Salix brachista HOM05D005990 ORTHO05D007908 2.6e-118 429.5 360 67.5
Lj3g0001925 Lotus japonicus HOM05D005990 ORTHO05D007908 4.4e-118 428.7 349 69.9
Sabra16G0268100 Salix brachista HOM05D005990 ORTHO05D007908 7.4e-118 427.9 323 73.4
CsaV3_3G005970 Cucumis sativus L. HOM05D005990 ORTHO05D007908 9.7e-118 427.6 365 66.0
Gohir.D13G148400 Gossypium hirsutum HOM05D005990 ORTHO05D007908 1.3e-117 427.2 291 79.0
Gorai.013G166200 Gossypium raimondii HOM05D005990 ORTHO05D007908 1.3e-117 427.2 291 79.0
CDE05G0179 Ceratophyllum demersum HOM05D005990 ORTHO05D007908 1.7e-117 426.8 300 76.7
Glyma.12G147300 Glycine max HOM05D005990 ORTHO05D007908 1.7e-117 426.8 300 77.7
Sed0021962 Sechium edule HOM05D005990 ORTHO05D007908 1.7e-117 426.8 331 69.2
CANSAT11G2493 Cannabis sativa HOM05D005990 ORTHO05D007908 2.2e-117 426.4 311 74.3
AUR62029313 Chenopodium quinoa HOM05D005990 ORTHO05D007908 2.2e-117 426.4 261 84.7
ClCG10G006520 Citrullus lanatus HOM05D005990 ORTHO05D007908 3.7e-117 425.6 369 66.1
Os11g0140800 Oryza sativa ssp. japonica HOM05D005990 ORTHO05D007908 8.2e-117 424.5 293 75.8
Phvul.011G155100 Phaseolus vulgaris HOM05D005990 ORTHO05D007908 8.2e-117 424.5 338 69.2
Gohir.A13G143600 Gossypium hirsutum HOM05D005990 ORTHO05D007908 1.1e-116 424.1 291 78.7
Ca_11848_v3 Cicer arietinum L. HOM05D005990 ORTHO05D007908 1.4e-116 423.7 294 77.6
VMungo1127G2019 Vigna mungo HOM05D005990 ORTHO05D007908 1.8e-116 423.3 309 75.7
AUR62015602 Chenopodium quinoa HOM05D005990 ORTHO05D007908 3.1e-116 422.5 261 84.3
Lj8A160T67 Lonicera japonica HOM05D005990 ORTHO05D007908 3.1e-116 422.5 261 84.7
Sc16g0006780 Simmondsia chinensis HOM05D005990 ORTHO05D007908 3.1e-116 422.5 299 75.9
Aqoxy4G01398 Aquilegia oxysepala HOM05D005990 ORTHO05D007908 5.3e-116 421.8 314 73.9
Ciclev10009149m.g Citrus clementina HOM05D005990 ORTHO05D007908 1.2e-115 420.6 274 81.8
Medtr8g464410 Medicago truncatula HOM05D005990 ORTHO05D007908 1.2e-115 420.6 306 73.9
Solyc07g063570.4 Solanum lycopersicum HOM05D005990 ORTHO05D007908 1.2e-115 420.6 311 74.6
MBI02_g35910_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 1.5e-115 420.2 275 82.2
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 1.5e-115 420.2 312 72.1
Sopen07g031750 Solanum pennellii HOM05D005990 ORTHO05D007908 2.0e-115 419.9 295 77.3
Lalb_Chr01g0006431 Lupinus albus HOM05D005990 ORTHO05D007908 3.4e-115 419.1 294 77.2
Nitab4.5_0008686g0040 Nicotiana tabacum HOM05D005990 ORTHO05D007908 3.4e-115 419.1 317 72.6
MD11G1237300 Malus domestica HOM05D005990 ORTHO05D007908 4.5e-115 418.7 309 73.1
Sp6g16330 Schrenkiella parvula HOM05D005990 ORTHO05D007908 2.2e-114 416.4 287 78.4
Nitab4.5_0000297g0120 Nicotiana tabacum HOM05D005990 ORTHO05D007908 3.8e-114 415.6 354 65.8
PSO210G5100 Papaver somniferum HOM05D005990 ORTHO05D007908 3.8e-114 415.6 301 74.1
PGSC0003DMG402019249 Solanum tuberosum HOM05D005990 ORTHO05D007908 5.0e-114 415.2 295 76.3
Atru.chr2.2820 Acer truncatum HOM05D005990 ORTHO05D007908 1.4e-113 413.7 303 75.9
BcaB05g22125 Brassica carinata HOM05D005990 ORTHO05D007908 2.5e-113 412.9 318 72.6
AL8G29620 Arabidopsis lyrata HOM05D005990 ORTHO05D007908 3.2e-113 412.5 303 74.9
AT5G54290 Arabidopsis thaliana HOM05D005990 ORTHO05D007908 4.2e-113 412.1 297 76.1
Cc05_g12670 Coffea canephora HOM05D005990 ORTHO05D007908 5.5e-113 411.8 297 76.4
BcaC03g14345 Brassica carinata HOM05D005990 ORTHO05D007908 1.2e-112 410.6 318 71.4
C02p17170 Brassica napus HOM05D005990 ORTHO05D007908 1.2e-112 410.6 318 71.4
Aa31LG3G10250 Aethionema arabicum HOM05D005990 ORTHO05D007908 3.6e-112 409.1 316 72.2
A02p10420 Brassica napus HOM05D005990 ORTHO05D007908 3.6e-112 409.1 319 71.2
BolC2t07817H Brassica oleracea HOM05D005990 ORTHO05D007908 3.6e-112 409.1 261 81.6
Thhalv10013940m.g Eutrema salsugineum HOM05D005990 ORTHO05D007908 6.1e-112 408.3 314 71.7
BraA02t06108Z Brassica rapa HOM05D005990 ORTHO05D007908 1.0e-111 407.5 261 81.6
CARHR267580 Cardamine hirsuta HOM05D005990 ORTHO05D007908 1.0e-111 407.5 314 72.0
MSTRG.15206 Avicennia marina HOM05D005990 ORTHO05D007908 2.3e-111 406.4 302 70.9
Carub.0008s1464 Capsella rubella HOM05D005990 ORTHO05D007908 2.3e-111 406.4 303 73.6
FAN21G0316 Fragaria x ananassa HOM05D005990 ORTHO05D007908 5.2e-111 405.2 384 62.0
THA.LOC104811848 Tarenaya hassleriana HOM05D005990 ORTHO05D007908 5.2e-111 405.2 303 73.6
Migut.M01860 Erythranthe guttata HOM05D005990 ORTHO05D007908 5.7e-110 401.7 302 72.5
Eucgr.F03355 Eucalyptus grandis HOM05D005990 ORTHO05D007908 3.7e-109 399.1 304 72.0
unitig_46.g18327 Utricularia gibba HOM05D005990 ORTHO05D007908 4.1e-108 395.6 320 67.8
HPP92_018217 Vanilla planifolia HOM05D005990 ORTHO05D007908 1.0e-106 391.0 298 72.5
Peaxi162Scf01216g00051 Petunia axillaris HOM05D005990 ORTHO05D007908 3.2e-105 386.0 268 76.5
SalBow7G3955 Salvia bowleyana HOM05D005990 ORTHO05D007908 1.8e-103 380.2 367 60.2
AagrBONN_evm.TU.Sc2ySwM_344.980 Anthoceros agrestis HOM05D005990 ORTHO05D007908 1.7e-101 373.6 260 76.5
DCAR_008702 Daucus carota HOM05D005990 ORTHO05D007908 1.7e-101 373.6 291 71.1
SMO119G0067 Selaginella moellendorffii HOM05D005990 ORTHO05D007908 4.8e-101 372.1 283 70.7
SGA_v2.0_scaffold9G04955 Striga asiatica HOM05D005990 ORTHO05D007908 1.4e-100 370.5 311 67.8
Haze_09528 Corylus avellana HOM05D005990 ORTHO05D007908 2.4e-100 369.8 331 66.2
QL08p017936 Quercus lobata HOM05D005990 ORTHO05D007908 1.2e-99 367.5 302 69.5
Ah.04g165420 Amaranthus hybridus HOM05D005990 ORTHO05D007908 3.5e-99 365.9 261 77.8
FAN16G0288 Fragaria x ananassa HOM05D005990 ORTHO05D007908 8.5e-98 361.3 342 63.5
arahy.Tifrunner.gnm1.ann1.3KJ3XQ Arachis hypogaea HOM05D005990 ORTHO05D007908 1.9e-97 360.1 294 70.1
vmacro09559 Vaccinium macrocarpon HOM05D005990 ORTHO05D007908 1.9e-97 360.1 265 75.5
arahy.Tifrunner.gnm1.ann1.NX1DPE Arachis hypogaea HOM05D005990 ORTHO05D007908 5.5e-97 358.6 294 69.7
Mapoly0093s0077 Marchantia polymorpha HOM05D005990 ORTHO05D007908 7.2e-97 358.2 253 75.1
TWI38G1683 Tripterygium wilfordii HOM05D005990 ORTHO05D007908 1.0e-95 354.4 260 76.2
EL10Ac4g08059 Beta vulgaris HOM05D005990 ORTHO05D007908 1.8e-95 353.6 291 70.4
MBI02_g10990_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 3.0e-95 352.8 219 84.9
Pp3c15_16730 Physcomitrium patens HOM05D005990 ORTHO05D007908 3.4e-94 349.4 288 64.9
PSO832G2166 Papaver somniferum HOM05D005990 ORTHO05D007908 1.7e-93 347.1 268 72.4
Hma1.2p1_1143F.1_g261070 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 8.0e-88 328.2 195 86.7
Oeu055680.2 Olea europaea HOM05D005990 ORTHO05D007908 4.4e-86 322.4 320 58.4
TPR.G39565 Trifolium pratense HOM05D005990 ORTHO05D007908 2.2e-85 320.1 237 73.0
CAN.G162.104 Capsicum annuum HOM05D005990 ORTHO05D007908 5.0e-82 308.9 270 64.8
CBR_g16976 Chara braunii HOM05D005990 ORTHO05D007908 3.3e-81 306.2 272 61.0
Psat0s617g0120 Pisum sativum HOM05D005990 ORTHO05D007908 2.1e-80 303.5 237 72.2
MBI02_g26442_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 1.6e-72 277.3 239 65.7
PRCOL_00006006 Prasinoderma coloniale HOM05D005990 ORTHO05D007908 4.1e-68 262.7 258 58.1
Actinidia18746 Actinidia chinensis HOM05D005990 ORTHO05D007908 5.4e-68 262.3 293 56.7
Cre07.g357800 Chlamydomonas reinhardtii HOM05D005990 ORTHO05D007908 2.7e-67 260.0 245 57.1
C03p17200 Brassica napus HOM05D005990 ORTHO05D007908 1.4e-60 237.7 249 60.2
AagrBONN_evm.TU.Sc2ySwM_117.2025 Anthoceros agrestis HOM05D005990 ORTHO05D007908 1.9e-60 237.3 262 57.3
MCO16G378 Micromonas commoda HOM05D005990 ORTHO05D007908 9.2e-60 235.0 274 50.4
Os12g0137300 Oryza sativa ssp. japonica HOM05D005990 ORTHO05D007908 1.4e-55 221.1 172 70.3
BolC3t14134H Brassica oleracea HOM05D005990 ORTHO05D007908 4.0e-55 219.5 225 62.2
SEGI_00968 Sequoiadendron giganteum HOM05D005990 ORTHO05D007908 8.1e-48 195.3 135 78.5
BcaC01g06300 Brassica carinata HOM05D005990 ORTHO05D007908 3.1e-47 193.4 137 77.4
Hma1.2p1_1302F.1_g274280 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 6.2e-40 169.1 98 90.8
Haze_08411 Corylus avellana HOM05D005990 ORTHO05D007908 1.2e-35 154.8 142 66.2
MD03G1219200 Malus domestica HOM05D005990 ORTHO05D007908 1.3e-34 151.4 204 52.5
SEGI_31484 Sequoiadendron giganteum HOM05D005990 ORTHO05D007908 1.9e-33 147.5 93 82.8
CSS0033016 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D043356 4.0e-31 139.8 157 56.1
CSS0043364 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D043356 1.2e-30 138.3 157 55.4
HPP92_027973 Vanilla planifolia HOM05D005990 ORTHO05D007908 2.4e-28 130.6 131 59.5
HPP92_027972 Vanilla planifolia HOM05D005990 ORTHO05D007908 1.2e-19 101.7 80 68.8
Sopen08g023060 Solanum pennellii HOM05D003334 ORTHO05D004076 1.8e-15 87.8 96 57.3
Solyc05g150137.1 Solanum lycopersicum HOM05D005990 ORTHO05D391672 4.1e-15 86.7 60 75.0
HanXRQChr12g0381681 Helianthus annuus HOM05D005990 ORTHO05D221923 7.2e-12 75.9 191 34.0
Sopen10g004100 Solanum pennellii HOM05D005990 ORTHO05D000950 1.3e-10 71.6 47 78.7
MBI07_g21055_MAGBIO Magnolia biondii HOM05D002560 ORTHO05D022192 2.6e-06 57.4 41 75.6
MBI17_g13390_MAGBIO Magnolia biondii HOM05D008002 ORTHO05D010148 5.9e-06 56.2 29 100.0


User provided reference genes

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