Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0751G138 Amborella trichopoda HOM05D005493 ORTHO05D007154 4.6e-166 588.2 384 100.0
Duzib192G0504 Durio zibethinus HOM05D005493 ORTHO05D007154 5.6e-87 325.5 322 55.0
TAR626G1878 Trochodendron aralioides HOM05D005493 ORTHO05D007154 5.6e-87 325.5 330 54.2
CDE05G0023 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 1.6e-86 323.9 293 60.1
Hma1.2p1_1175F.1_g264030 Hydrangea macrophylla HOM05D005493 ORTHO05D007154 8.1e-86 321.6 284 59.5
Cc09_g00320 Coffea canephora HOM05D005493 ORTHO05D007154 1.8e-85 320.5 307 57.3
TWI63G0139 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 2.3e-85 320.1 308 57.5
Cpa.g.sc27.228 Carica papaya HOM05D005493 ORTHO05D007154 6.8e-85 318.5 284 60.9
SalBow8G5358 Salvia bowleyana HOM05D005493 ORTHO05D007154 6.8e-85 318.5 311 55.6
CsaV3_1G015560 Cucumis sativus L. HOM05D005493 ORTHO05D007154 2.6e-84 316.6 294 59.5
CiPaw.10G081900 Carya illinoinensis HOM05D005493 ORTHO05D007154 3.4e-84 316.2 329 55.0
PSO339G5884 Papaver somniferum HOM05D005493 ORTHO05D007154 1.3e-83 314.3 305 56.1
CAN.G1156.21 Capsicum annuum HOM05D005493 ORTHO05D007154 2.9e-83 313.2 284 58.8
Manes.13G088900 Manihot esculenta HOM05D005493 ORTHO05D007154 3.7e-83 312.8 315 55.2
Actinidia39254 Actinidia chinensis HOM05D005493 ORTHO05D007154 8.3e-83 311.6 332 55.1
arahy.Tifrunner.gnm1.ann1.N8508C Arachis hypogaea HOM05D005493 ORTHO05D007154 8.3e-83 311.6 305 63.9
ClCG01G010900 Citrullus lanatus HOM05D005493 ORTHO05D007154 8.3e-83 311.6 294 58.5
CDE05G0194 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 1.9e-82 310.5 294 63.9
MELO3C026067.2 Cucumis melo HOM05D005493 ORTHO05D007154 2.4e-82 310.1 297 57.9
Sed0001140 Sechium edule HOM05D005493 ORTHO05D007154 3.2e-82 309.7 324 57.7
Duzib160G0837 Durio zibethinus HOM05D005493 ORTHO05D007154 4.1e-82 309.3 306 56.2
Lj6g0009296 Lotus japonicus HOM05D005493 ORTHO05D007154 5.4e-82 308.9 298 60.4
TWI38G1153 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 1.6e-81 307.4 282 59.6
Ciclev10015889m.g Citrus clementina HOM05D005493 ORTHO05D007154 2.1e-81 307.0 307 64.8
Lalb_Chr18g0057311 Lupinus albus HOM05D005493 ORTHO05D007154 2.7e-81 306.6 293 61.4
Potri.006G004900 Populus trichocarpa HOM05D005493 ORTHO05D007154 2.7e-81 306.6 345 58.0
PGSC0003DMG400013365 Solanum tuberosum HOM05D005493 ORTHO05D007154 2.7e-81 306.6 287 59.6
Thecc.06G236400 Theobroma cacao HOM05D005493 ORTHO05D007154 2.7e-81 306.6 300 57.7
Gorai.009G184000 Gossypium raimondii HOM05D005493 ORTHO05D007154 4.6e-81 305.8 330 54.2
Gohir.D05G178600 Gossypium hirsutum HOM05D005493 ORTHO05D007154 6.0e-81 305.4 328 54.3
Gohir.A05G175500 Gossypium hirsutum HOM05D005493 ORTHO05D007154 7.8e-81 305.1 291 58.8
arahy.Tifrunner.gnm1.ann1.2D6L40 Arachis hypogaea HOM05D005493 ORTHO05D007154 2.3e-80 303.5 302 66.2
Lsat_1_v5_gn_4_63901 Lactuca sativa HOM05D005493 ORTHO05D007154 3.0e-80 303.1 315 54.6
Medtr2g027010 Medicago truncatula HOM05D005493 ORTHO05D007154 3.9e-80 302.8 280 58.6
CANSAT56G4202 Cannabis sativa HOM05D005493 ORTHO05D007154 5.1e-80 302.4 277 65.0
AUR62033011 Chenopodium quinoa HOM05D005493 ORTHO05D007154 5.1e-80 302.4 329 53.5
MSTRG.7128 Avicennia marina HOM05D005493 ORTHO05D007154 6.6e-80 302.0 332 62.7
VMungo0540G1721 Vigna mungo HOM05D005493 ORTHO05D007154 6.6e-80 302.0 295 55.9
Potri.016G005500 Populus trichocarpa HOM05D005493 ORTHO05D007154 1.5e-79 300.8 329 54.1
SGA_v2.0_scaffold7G03695 Striga asiatica HOM05D005493 ORTHO05D007154 1.5e-79 300.8 286 56.6
MBI14_g10146_MAGBIO Magnolia biondii HOM05D005493 ORTHO05D007154 2.5e-79 300.1 297 66.7
Haze_07019 Corylus avellana HOM05D005493 ORTHO05D007154 4.3e-79 299.3 219 69.4
Atru.chr1.2258 Acer truncatum HOM05D005493 ORTHO05D007154 7.3e-79 298.5 273 60.4
Cfa000035 Carpinus fangiana HOM05D005493 ORTHO05D007154 9.5e-79 298.1 219 68.9
DCAR_006316 Daucus carota HOM05D005493 ORTHO05D007154 9.5e-79 298.1 298 51.7
Phvul.006G138500 Phaseolus vulgaris HOM05D005493 ORTHO05D007154 9.5e-79 298.1 299 54.8
Glyma.15G120100 Glycine max HOM05D005493 ORTHO05D007154 1.2e-78 297.7 291 56.7
Aqoxy1G04259 Aquilegia oxysepala HOM05D005493 ORTHO05D007154 2.8e-78 296.6 295 61.0
SGA_v2.0_scaffold186G40127 Striga asiatica HOM05D005493 ORTHO05D007154 2.8e-78 296.6 285 58.6
CSS0047473 Camellia sinensis var. sinensis HOM05D005493 ORTHO05D007154 1.8e-77 293.9 327 52.3
Dinv02850 Davidia involucrata HOM05D005493 ORTHO05D007154 3.1e-77 293.1 249 61.8
FAN28G0158 Fragaria x ananassa HOM05D005493 ORTHO05D007154 4.0e-77 292.7 295 61.4
MSTRG.16053 Avicennia marina HOM05D005493 ORTHO05D007154 8.9e-77 291.6 297 53.5
Prupe.4G003700 Prunus persica HOM05D005493 ORTHO05D007154 1.2e-76 291.2 289 66.4
Hund29945 Selenicereus undatus HOM05D005493 ORTHO05D007154 1.5e-76 290.8 305 54.1
Eucgr.E03858 Eucalyptus grandis HOM05D005493 ORTHO05D007154 2.0e-76 290.4 298 56.0
HanXRQChr16g0515751 Helianthus annuus HOM05D005493 ORTHO05D007154 2.0e-76 290.4 295 53.9
A09p23180 Brassica napus HOM05D005493 ORTHO05D007154 2.6e-76 290.0 330 58.5
BraA09t37921Z Brassica rapa HOM05D005493 ORTHO05D007154 2.6e-76 290.0 330 58.5
Peaxi162Scf00827g00517 Petunia axillaris HOM05D005493 ORTHO05D007154 2.6e-76 290.0 223 65.0
Rhsim13G0140700 Rhododendron simsii HOM05D005493 ORTHO05D007154 3.4e-76 289.7 285 58.6
Glyma.09G014500 Glycine max HOM05D005493 ORTHO05D007154 4.4e-76 289.3 301 53.8
C09p29920 Brassica napus HOM05D005493 ORTHO05D007154 5.8e-76 288.9 310 60.3
BolC9t55855H Brassica oleracea HOM05D005493 ORTHO05D007154 5.8e-76 288.9 310 60.3
PGR042G0366 Punica granatum HOM05D005493 ORTHO05D007154 5.8e-76 288.9 303 56.1
Aa31sc219G70 Aethionema arabicum HOM05D005493 ORTHO05D007154 7.6e-76 288.5 307 54.4
EL10Ac8g19414 Beta vulgaris HOM05D005493 ORTHO05D007154 7.6e-76 288.5 333 51.1
MD10G1339200 Malus domestica HOM05D005493 ORTHO05D007154 7.6e-76 288.5 287 64.5
Thhalv10000943m.g Eutrema salsugineum HOM05D005493 ORTHO05D007154 9.9e-76 288.1 277 64.3
BcaC04g21607 Brassica carinata HOM05D005493 ORTHO05D007154 1.3e-75 287.7 310 60.0
Oeu025962.1 Olea europaea HOM05D005493 ORTHO05D007154 2.2e-75 287.0 280 67.9
QL05p067786 Quercus lobata HOM05D005493 ORTHO05D007154 2.2e-75 287.0 329 54.4
THA.LOC104806738 Tarenaya hassleriana HOM05D005493 ORTHO05D007154 2.2e-75 287.0 312 52.6
TPR.G17550 Trifolium pratense HOM05D005493 ORTHO05D007154 2.2e-75 287.0 302 53.3
Ah.11g043160 Amaranthus hybridus HOM05D005493 ORTHO05D007154 2.9e-75 286.6 280 56.4
FvH4_1g24140 Fragaria vesca HOM05D005493 ORTHO05D007154 2.9e-75 286.6 308 64.3
FAN19G1729 Fragaria x ananassa HOM05D005493 ORTHO05D007154 2.9e-75 286.6 308 64.3
Sp2g12390 Schrenkiella parvula HOM05D005493 ORTHO05D007154 2.9e-75 286.6 316 55.4
C07p31340 Brassica napus HOM05D005493 ORTHO05D007154 3.8e-75 286.2 302 58.9
FAN23G1811 Fragaria x ananassa HOM05D005493 ORTHO05D007154 3.8e-75 286.2 311 64.0
BcaB07g30764 Brassica carinata HOM05D005493 ORTHO05D007154 4.9e-75 285.8 308 56.8
CARHR173630 Cardamine hirsuta HOM05D005493 ORTHO05D007154 6.4e-75 285.4 297 59.3
Nn1g07522 Nelumbo nucifera HOM05D005493 ORTHO05D007154 1.1e-74 284.6 256 59.8
Solyc11g012760.2 Solanum lycopersicum HOM05D005493 ORTHO05D007154 1.1e-74 284.6 230 63.0
Sopen11g007500 Solanum pennellii HOM05D005493 ORTHO05D007154 1.1e-74 284.6 221 65.2
Migut.M01444 Erythranthe guttata HOM05D005493 ORTHO05D007154 2.4e-74 283.5 320 58.8
Nitab4.5_0001296g0130 Nicotiana tabacum HOM05D005493 ORTHO05D007154 3.2e-74 283.1 227 62.6
Lj1A1246T23 Lonicera japonica HOM05D005493 ORTHO05D007154 9.2e-74 281.6 303 50.8
RcHm_v2.0_Chr2g0120371 Rosa chinensis HOM05D005493 ORTHO05D007154 1.2e-73 281.2 305 63.3
COL.COLO4_31918 Corchorus olitorius HOM05D005493 ORTHO05D007154 2.1e-73 280.4 217 65.4
BcaC06g31350 Brassica carinata HOM05D005493 ORTHO05D007154 3.5e-73 279.6 295 64.7
A06p44860 Brassica napus HOM05D005493 ORTHO05D007154 6.0e-73 278.9 313 56.9
BraA06t27358Z Brassica rapa HOM05D005493 ORTHO05D007154 1.7e-72 277.3 313 56.5
Zm00001eb253250 Zea mays HOM05D005493 ORTHO05D007154 5.1e-72 275.8 314 50.3
Psat1g172480 Pisum sativum HOM05D005493 ORTHO05D007154 6.6e-72 275.4 310 51.0
ECA232G3574 Erigeron canadensis HOM05D005493 ORTHO05D007154 8.6e-72 275.0 296 54.7
Sabra06G0004100 Salix brachista HOM05D005493 ORTHO05D007154 8.6e-72 275.0 245 60.4
Carub.0008s0010 Capsella rubella HOM05D005493 ORTHO05D007154 1.9e-71 273.9 305 56.7
AL8G10270 Arabidopsis lyrata HOM05D005493 ORTHO05D007154 1.2e-70 271.2 318 60.7
vmacro03608 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 2.4e-69 266.9 355 47.0
AT5G47680 Arabidopsis thaliana HOM05D005493 ORTHO05D007154 4.0e-69 266.2 306 61.4
Dinv15338 Davidia involucrata HOM05D005493 ORTHO05D007154 7.1e-66 255.4 286 51.4
Sc17g0007990 Simmondsia chinensis HOM05D005493 ORTHO05D007154 1.9e-63 247.3 238 56.3
HPP92_027483 Vanilla planifolia HOM05D005493 ORTHO05D007154 1.9e-63 247.3 233 56.2
Rhsim13G0140600 Rhododendron simsii HOM05D005493 ORTHO05D007154 5.6e-63 245.7 290 50.3
Pp3c1_33120 Physcomitrium patens HOM05D005493 ORTHO05D007154 2.1e-62 243.8 328 46.6
BcaC06g34232 Brassica carinata HOM05D005493 ORTHO05D007154 8.1e-62 241.9 298 51.7
AUR62034063 Chenopodium quinoa HOM05D005493 ORTHO05D007154 1.4e-61 241.1 180 65.0
BolC7t43675H Brassica oleracea HOM05D005493 ORTHO05D007154 4.0e-61 239.6 246 63.0
SEGI_02626 Sequoiadendron giganteum HOM05D005493 ORTHO05D007154 6.4e-59 232.3 286 47.6
Ca_00763_v3 Cicer arietinum L. HOM05D005493 ORTHO05D007154 4.2e-58 229.6 182 61.5
Mapoly0011s0174 Marchantia polymorpha HOM05D005493 ORTHO05D007154 1.5e-55 221.1 201 54.7
GSVIVG01002894001 Vitis vinifera HOM05D005493 ORTHO05D007154 3.4e-52 209.9 140 73.6
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 3.2e-50 203.4 271 42.4
Pp3c2_12110 Physcomitrium patens HOM05D005493 ORTHO05D007154 2.7e-49 200.3 299 40.8
SMO358G0363 Selaginella moellendorffii HOM05D005493 ORTHO05D007154 1.0e-48 198.4 266 47.4
SHI12358 Sapria himalayana HOM05D005493 ORTHO05D007154 1.2e-41 174.9 124 66.1
Os02g0725600 Oryza sativa ssp. japonica HOM05D005493 ORTHO05D007154 4.6e-41 172.9 121 71.1
MCO13G503 Micromonas commoda HOM05D005493 ORTHO05D007154 3.3e-39 166.8 177 46.9
Sabra16G0010400 Salix brachista HOM05D005493 ORTHO05D007154 5.3e-37 159.5 272 40.4
AagrBONN_evm.TU.Sc2ySwM_362.2751 Anthoceros agrestis HOM05D005493 ORTHO05D007154 1.1e-34 151.8 240 37.5
Cre06.g278500 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 3.0e-32 143.7 331 30.5
Zm00001eb070580 Zea mays HOM05D005493 ORTHO05D007154 5.7e-31 139.4 90 74.4
Zm00001eb264500 Zea mays HOM05D005493 ORTHO05D007154 5.7e-31 139.4 92 72.8
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 3.4e-28 130.2 215 33.5
Actinidia11906 Actinidia chinensis HOM05D005493 ORTHO05D007154 2.9e-27 127.1 194 43.8
PRCOL_00000725 Prasinoderma coloniale HOM05D005493 ORTHO05D007154 1.4e-21 108.2 198 31.3
Zm00001eb168490 Zea mays HOM05D000087 ORTHO05D011931 2.0e-20 104.4 65 76.9
Cfa025804 Carpinus fangiana HOM05D005493 ORTHO05D007154 2.1e-17 94.4 123 42.3
unitig_37.g12178 Utricularia gibba HOM05D005493 ORTHO05D007154 1.0e-16 92.0 167 47.3
Cre02.g119350 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 2.2e-14 84.3 182 31.3
PRCOL_00003979 Prasinoderma coloniale HOM05D005493 ORTHO05D049008 3.5e-12 77.0 204 28.9
SHI50428 Sapria himalayana HOM05D005493 ORTHO05D007154 3.2e-10 70.5 165 31.5
unitig_37.g12179 Utricularia gibba HOM05D005493 ORTHO05D007154 1.2e-07 62.0 49 65.3
Cre10.g456851 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 5.7e-07 59.7 201 24.4
MCO11G471 Micromonas commoda HOM05D050729 ORTHO05D049153 1.3e-06 58.5 96 29.2
vmacro23227 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 2.8e-06 57.4 80 43.8
MCO12G371 Micromonas commoda HOM05D005493 ORTHO05D049008 3.7e-06 57.0 169 26.6


User provided reference genes

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