Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0751G082 Amborella trichopoda HOM05D004048 ORTHO05D004859 7.3e-167 590.5 301 100.0
ATR0751G137 Amborella trichopoda HOM05D004048 ORTHO05D004859 7.4e-119 431.0 254 86.2
MD07G1131200 Malus domestica HOM05D004048 ORTHO05D004859 3.1e-109 399.1 241 84.2
CSS0027402 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 4.1e-109 398.7 241 83.4
Manes.05G029300 Manihot esculenta HOM05D004048 ORTHO05D004859 4.1e-109 398.7 241 83.4
Migut.B01799 Erythranthe guttata HOM05D004048 ORTHO05D004859 6.9e-109 397.9 268 76.5
Thecc.01G352400 Theobroma cacao HOM05D004048 ORTHO05D004859 6.9e-109 397.9 244 80.7
Sp5g01880 Schrenkiella parvula HOM05D004048 ORTHO05D004859 9.1e-109 397.5 238 82.8
SGA_v2.0_scaffold4G02279 Striga asiatica HOM05D004048 ORTHO05D004859 1.2e-108 397.1 238 82.4
Ciclev10020577m.g Citrus clementina HOM05D004048 ORTHO05D004859 1.5e-108 396.7 263 77.6
Potri.014G090500 Populus trichocarpa HOM05D004048 ORTHO05D004859 1.5e-108 396.7 238 83.2
Sabra14G0065600 Salix brachista HOM05D004048 ORTHO05D004859 2.0e-108 396.4 238 83.6
AT3G61530 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 3.4e-108 395.6 260 77.7
Duzib268G0835 Durio zibethinus HOM05D004048 ORTHO05D004859 3.4e-108 395.6 260 76.9
Cc02_g21240 Coffea canephora HOM05D004048 ORTHO05D004859 4.5e-108 395.2 275 76.0
Aqoxy5G04084 Aquilegia oxysepala HOM05D004048 ORTHO05D004859 5.9e-108 394.8 241 81.3
PSO063G1481 Papaver somniferum HOM05D004048 ORTHO05D004859 5.9e-108 394.8 241 80.9
PSO170G0644 Papaver somniferum HOM05D004048 ORTHO05D004859 5.9e-108 394.8 241 81.3
TAR375G1056 Trochodendron aralioides HOM05D004048 ORTHO05D004859 5.9e-108 394.8 237 82.3
COL.COLO4_12778 Corchorus olitorius HOM05D004048 ORTHO05D004859 7.7e-108 394.4 238 82.4
Gohir.D08G154300 Gossypium hirsutum HOM05D004048 ORTHO05D004859 7.7e-108 394.4 244 80.3
Gorai.004G160400 Gossypium raimondii HOM05D004048 ORTHO05D004859 7.7e-108 394.4 260 76.9
Nitab4.5_0000615g0020 Nicotiana tabacum HOM05D004048 ORTHO05D004859 7.7e-108 394.4 238 81.5
Nn1g01686 Nelumbo nucifera HOM05D004048 ORTHO05D004859 1.0e-107 394.0 259 76.4
Prupe.2G177600 Prunus persica HOM05D004048 ORTHO05D004859 1.0e-107 394.0 241 82.6
A09p53600 Brassica napus HOM05D004048 ORTHO05D004859 1.3e-107 393.7 257 77.0
Dinv32522 Davidia involucrata HOM05D004048 ORTHO05D004859 1.3e-107 393.7 247 80.2
THA.LOC104817317 Tarenaya hassleriana HOM05D004048 ORTHO05D004859 1.3e-107 393.7 241 81.3
CANSAT56G4107 Cannabis sativa HOM05D004048 ORTHO05D004859 1.7e-107 393.3 272 76.1
Eucgr.B01988 Eucalyptus grandis HOM05D004048 ORTHO05D004859 1.7e-107 393.3 238 81.5
Gohir.D08G043100 Gossypium hirsutum HOM05D004048 ORTHO05D004859 1.7e-107 393.3 238 81.9
TWI23G0617 Tripterygium wilfordii HOM05D004048 ORTHO05D004859 1.7e-107 393.3 264 76.5
Hund27241 Selenicereus undatus HOM05D004048 ORTHO05D004859 2.2e-107 392.9 238 82.4
AT2G46110 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 2.9e-107 392.5 238 81.9
CSS0029554 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 2.9e-107 392.5 241 82.2
CAN.G439.29 Capsicum annuum HOM05D004048 ORTHO05D004859 2.9e-107 392.5 238 81.1
Gorai.004G041700 Gossypium raimondii HOM05D004048 ORTHO05D004859 2.9e-107 392.5 237 82.3
MBI03_g34597_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 3.8e-107 392.1 239 82.0
PGR004G0897 Punica granatum HOM05D004048 ORTHO05D004859 3.8e-107 392.1 270 75.6
Solyc09g007130.3 Solanum lycopersicum HOM05D004048 ORTHO05D004859 5.0e-107 391.7 238 81.1
Haze_15565 Corylus avellana HOM05D004048 ORTHO05D004859 6.5e-107 391.3 238 79.8
Gohir.A08G032200 Gossypium hirsutum HOM05D004048 ORTHO05D004859 6.5e-107 391.3 238 81.5
Oeu054354.2 Olea europaea HOM05D004048 ORTHO05D004859 6.5e-107 391.3 232 83.6
AL5G43890 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 8.5e-107 391.0 238 81.9
BcaB02g07374 Brassica carinata HOM05D004048 ORTHO05D004859 8.5e-107 391.0 268 74.6
C06p27540 Brassica napus HOM05D004048 ORTHO05D004859 1.4e-106 390.2 239 80.8
BraA09t40782Z Brassica rapa HOM05D004048 ORTHO05D004859 1.4e-106 390.2 257 77.0
vmacro13227 Vaccinium macrocarpon HOM05D004048 ORTHO05D004859 1.4e-106 390.2 259 77.2
Thhalv10001521m.g Eutrema salsugineum HOM05D004048 ORTHO05D004859 1.9e-106 389.8 238 81.1
Lj9C589T5 Lonicera japonica HOM05D004048 ORTHO05D004859 1.9e-106 389.8 258 76.4
Sp4g28180 Schrenkiella parvula HOM05D004048 ORTHO05D004859 1.9e-106 389.8 238 81.5
BcaC08g45130 Brassica carinata HOM05D004048 ORTHO05D004859 2.5e-106 389.4 267 74.5
A07p25550 Brassica napus HOM05D004048 ORTHO05D004859 2.5e-106 389.4 267 74.5
BolC6t37921H Brassica oleracea HOM05D004048 ORTHO05D004859 2.5e-106 389.4 267 74.5
BraA07t30196Z Brassica rapa HOM05D004048 ORTHO05D004859 2.5e-106 389.4 267 74.5
HanXRQChr17g0562171 Helianthus annuus HOM05D004048 ORTHO05D004859 2.5e-106 389.4 266 75.9
Rhsim07G0010400 Rhododendron simsii HOM05D004048 ORTHO05D004859 2.5e-106 389.4 235 83.0
BcaC07g40651 Brassica carinata HOM05D004048 ORTHO05D004859 3.2e-106 389.0 257 76.3
BolC8t51222H Brassica oleracea HOM05D004048 ORTHO05D004859 3.2e-106 389.0 257 76.3
QL04p055532 Quercus lobata HOM05D004048 ORTHO05D004859 3.2e-106 389.0 241 80.5
PGSC0003DMG400002011 Solanum tuberosum HOM05D004048 ORTHO05D004859 3.2e-106 389.0 238 79.8
HPP92_005267 Vanilla planifolia HOM05D004048 ORTHO05D004859 3.2e-106 389.0 241 80.1
arahy.Tifrunner.gnm1.ann1.8BBS1S Arachis hypogaea HOM05D004048 ORTHO05D004859 4.2e-106 388.7 238 81.1
Peaxi162Scf00217g00711 Petunia axillaris HOM05D004048 ORTHO05D004859 4.2e-106 388.7 238 80.7
Aa31LG10G15450 Aethionema arabicum HOM05D004048 ORTHO05D004859 5.5e-106 388.3 239 80.3
Carub.0004s2881 Capsella rubella HOM05D004048 ORTHO05D004859 5.5e-106 388.3 238 80.7
AUR62004413 Chenopodium quinoa HOM05D004048 ORTHO05D004859 5.5e-106 388.3 238 82.4
Sc01g0003210 Simmondsia chinensis HOM05D004048 ORTHO05D004859 5.5e-106 388.3 238 79.8
C08p36390 Brassica napus HOM05D004048 ORTHO05D004859 7.2e-106 387.9 257 76.3
Hma1.2p1_0335F.1_g128890 Hydrangea macrophylla HOM05D004048 ORTHO05D004859 7.2e-106 387.9 237 80.2
Actinidia10075 Actinidia chinensis HOM05D004048 ORTHO05D004859 1.2e-105 387.1 242 78.9
AUR62022619 Chenopodium quinoa HOM05D004048 ORTHO05D004859 1.2e-105 387.1 238 81.9
arahy.Tifrunner.gnm1.ann1.9CR96V Arachis hypogaea HOM05D004048 ORTHO05D004859 1.6e-105 386.7 238 80.7
FvH4_7g15370 Fragaria vesca HOM05D004048 ORTHO05D004859 2.7e-105 386.0 238 81.9
FAN06G1753 Fragaria x ananassa HOM05D004048 ORTHO05D004859 3.6e-105 385.6 238 81.9
Lalb_Chr17g0338041 Lupinus albus HOM05D004048 ORTHO05D004859 3.6e-105 385.6 239 81.2
RcHm_v2.0_Chr1g0357691 Rosa chinensis HOM05D004048 ORTHO05D004859 6.1e-105 384.8 260 77.3
Carub.0005s2822 Capsella rubella HOM05D004048 ORTHO05D004859 1.4e-104 383.6 238 80.3
FAN03G0096 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.4e-104 383.6 238 81.5
EL10Ac1g00354 Beta vulgaris HOM05D004048 ORTHO05D004859 1.8e-104 383.3 238 80.7
FAN10G1698 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.8e-104 383.3 238 81.9
FAN10G3606 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.8e-104 383.3 238 81.9
Ah.05g180160 Amaranthus hybridus HOM05D004048 ORTHO05D004859 2.3e-104 382.9 258 76.4
CsaV3_7G025860 Cucumis sativus L. HOM05D004048 ORTHO05D004859 2.3e-104 382.9 262 74.0
Psat4g156920 Pisum sativum HOM05D004048 ORTHO05D004859 2.3e-104 382.9 238 81.1
Glyma.07G064600 Glycine max HOM05D004048 ORTHO05D004859 3.0e-104 382.5 241 79.7
Lj1g0027864 Lotus japonicus HOM05D004048 ORTHO05D004859 3.0e-104 382.5 238 80.7
CiPaw.02G034800 Carya illinoinensis HOM05D004048 ORTHO05D004859 5.1e-104 381.7 241 79.7
DCAR_025214 Daucus carota HOM05D004048 ORTHO05D004859 1.1e-103 380.6 261 75.9
Atru.chr7.1494 Acer truncatum HOM05D004048 ORTHO05D004859 1.5e-103 380.2 242 79.8
Lsat_1_v5_gn_4_35260 Lactuca sativa HOM05D004048 ORTHO05D004859 2.0e-103 379.8 268 73.9
Duzib138G1147 Durio zibethinus HOM05D004048 ORTHO05D004859 5.7e-103 378.3 289 68.9
Zm00001eb339000 Zea mays HOM05D004048 ORTHO05D004859 7.4e-103 377.9 242 78.1
VMungo0331G0386 Vigna mungo HOM05D004048 ORTHO05D004859 1.7e-102 376.7 237 78.9
SEGI_12250 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 2.8e-102 375.9 243 77.8
TPR.G28287 Trifolium pratense HOM05D004048 ORTHO05D004859 2.8e-102 375.9 238 79.8
Lj5g0009706 Lotus japonicus HOM05D004048 ORTHO05D004859 3.7e-102 375.6 243 79.0
FAN06G0189 Fragaria x ananassa HOM05D004048 ORTHO05D004859 4.8e-102 375.2 255 76.5
Medtr8g028555 Medicago truncatula HOM05D004048 ORTHO05D004859 1.4e-101 373.6 238 79.8
arahy.Tifrunner.gnm1.ann1.8G3C0P Arachis hypogaea HOM05D004048 ORTHO05D004859 4.1e-101 372.1 238 77.7
Rhsim07G0205800 Rhododendron simsii HOM05D004048 ORTHO05D004859 9.1e-101 370.9 277 70.8
MELO3C014805.2 Cucumis melo HOM05D004048 ORTHO05D004859 2.6e-100 369.4 238 78.2
BcaC07g40671 Brassica carinata HOM05D004048 ORTHO05D004859 5.9e-100 368.2 242 76.4
TPR.G37181 Trifolium pratense HOM05D004048 ORTHO05D004859 7.7e-100 367.9 238 77.7
Nitab4.5_0005222g0030 Nicotiana tabacum HOM05D004048 ORTHO05D004859 1.7e-99 366.7 242 78.1
RcHm_v2.0_Chr1g0357711 Rosa chinensis HOM05D004048 ORTHO05D004859 2.9e-99 365.9 245 75.9
Rhsim07G0206900 Rhododendron simsii HOM05D004048 ORTHO05D004859 6.5e-99 364.8 288 67.4
Ca_03490_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 1.2e-97 360.5 263 72.2
SEGI_21771 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 2.1e-97 359.8 232 76.3
Pp3c7_220 Physcomitrium patens HOM05D004048 ORTHO05D004859 1.4e-96 357.1 246 71.1
MELO3C012767.2 Cucumis melo HOM05D004048 ORTHO05D004859 3.9e-96 355.5 284 66.5
Sopen09g002000 Solanum pennellii HOM05D004048 ORTHO05D004859 7.4e-95 351.3 209 83.3
unitig_60.g25627 Utricularia gibba HOM05D004048 ORTHO05D004859 8.2e-94 347.8 243 76.1
AagrBONN_evm.TU.Sc2ySwM_117.2358 Anthoceros agrestis HOM05D004048 ORTHO05D004859 1.4e-93 347.1 238 72.3
AagrBONN_evm.TU.Sc2ySwM_117.1042 Anthoceros agrestis HOM05D004048 ORTHO05D004859 3.1e-93 345.9 238 71.8
Mapoly0035s0043 Marchantia polymorpha HOM05D004048 ORTHO05D004859 5.3e-93 345.1 237 73.0
SMO144G0210 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 2.6e-92 342.8 237 72.2
ClCG09G009090 Citrullus lanatus HOM05D004048 ORTHO05D004859 4.5e-92 342.0 208 81.7
ECA234G0147 Erigeron canadensis HOM05D004048 ORTHO05D004859 9.4e-90 334.3 194 86.6
Phvul.010G104900 Phaseolus vulgaris HOM05D004048 ORTHO05D004859 2.1e-89 333.2 200 83.5
CBR_g45417 Chara braunii HOM05D004048 ORTHO05D004859 2.7e-89 332.8 242 68.6
Os01g0225500 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 3.6e-89 332.4 219 74.9
FvH4_7g15371 Fragaria vesca HOM05D004048 ORTHO05D004859 1.8e-88 330.1 263 66.5
MCO13G154 Micromonas commoda HOM05D004048 ORTHO05D004859 4.0e-88 328.9 248 66.9
CARHR107270 Cardamine hirsuta HOM05D004048 ORTHO05D004859 4.8e-86 322.0 241 70.5
Cre12.g508550 Chlamydomonas reinhardtii HOM05D004048 ORTHO05D004859 2.4e-85 319.7 238 66.8
FAN06G4041 Fragaria x ananassa HOM05D004048 ORTHO05D004859 5.3e-85 318.5 219 73.5
Glyma.09G254700 Glycine max HOM05D004048 ORTHO05D004859 3.8e-83 312.4 216 72.7
Cpa.g.sc11.73 Carica papaya HOM05D004048 ORTHO05D004859 1.6e-81 307.0 184 81.5
SMO119G0299 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 2.1e-81 306.6 219 68.9
Nn6g32447 Nelumbo nucifera HOM05D004048 ORTHO05D004859 4.7e-81 305.4 184 79.3
SMO356G0035 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 4.7e-81 305.4 220 68.6
PRCOL_00005166 Prasinoderma coloniale HOM05D004048 ORTHO05D004859 4.4e-79 298.9 242 62.4
GSVIVG01026967001 Vitis vinifera HOM05D004048 ORTHO05D004859 7.0e-77 291.6 172 86.6
FAN10G3616 Fragaria x ananassa HOM05D004048 ORTHO05D004859 5.5e-74 282.0 281 57.7
Gohir.A08G133000 Gossypium hirsutum HOM05D004048 ORTHO05D004859 2.8e-73 279.6 172 81.4
Medtr4g037245 Medicago truncatula HOM05D004048 ORTHO05D004859 4.4e-71 272.3 202 71.3
CDE11G0110 Ceratophyllum demersum HOM05D004048 ORTHO05D004859 4.1e-69 265.8 162 81.5
FAN06G1997 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.3e-67 260.8 231 60.2
Medtr4g037305 Medicago truncatula HOM05D004048 ORTHO05D004859 9.8e-63 244.6 156 80.1
Eucgr.B01984 Eucalyptus grandis HOM05D004048 ORTHO05D004859 1.7e-62 243.8 238 57.6
BcaC07g42671 Brassica carinata HOM05D004048 ORTHO05D004859 6.4e-62 241.9 257 54.5
Cfa001640 Carpinus fangiana HOM05D004048 ORTHO05D004859 1.2e-55 221.1 271 48.7
arahy.Tifrunner.gnm1.ann1.CIF5FW Arachis hypogaea HOM05D004048 ORTHO05D004859 4.9e-54 215.7 138 73.2
FAN10G1509 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.4e-53 213.4 156 72.4
SHI16536 Sapria himalayana HOM05D004048 ORTHO05D004859 3.7e-46 189.5 113 79.6
Eucgr.B01986 Eucalyptus grandis HOM05D004048 ORTHO05D004859 3.9e-43 179.5 182 57.7
AL4G45340 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 3.6e-41 172.9 111 79.3
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 6.2e-41 172.2 204 47.5
MBI17_g16531_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 7.1e-37 158.7 103 72.8
Haze_27487 Corylus avellana HOM05D004048 ORTHO05D004859 3.5e-36 156.4 177 45.8
CAN.G439.28 Capsicum annuum HOM05D004048 ORTHO05D004859 5.6e-34 149.1 85 80.0
MBI12_g43904_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 1.8e-32 144.1 96 75.0
Ca_03489_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 1.4e-29 134.4 113 65.5
Medtr4g037275 Medicago truncatula HOM05D004048 ORTHO05D004859 3.2e-29 133.3 76 84.2
TPR.G28294 Trifolium pratense HOM05D004048 ORTHO05D004859 2.7e-28 130.2 141 58.2
SEGI_25526 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 2.3e-27 127.1 84 75.0
Actinidia20163 Actinidia chinensis HOM05D004048 ORTHO05D004859 9.0e-24 115.2 151 51.7
FAN10G2371 Fragaria x ananassa HOM05D004048 ORTHO05D038698 5.1e-19 99.4 88 61.4
SGA_v2.0_scaffold4G02383 Striga asiatica HOM05D004048 ORTHO05D051375 5.6e-18 95.9 73 69.9
AL4G45350 Arabidopsis lyrata HOM05D004048 ORTHO05D038698 3.7e-17 93.2 55 78.2
HanXRQChr15g0474641 Helianthus annuus HOM05D004048 ORTHO05D004859 6.2e-17 92.4 62 74.2
PGSC0003DMG400018716 Solanum tuberosum HOM05D004048 ORTHO05D004859 2.9e-14 83.6 50 84.0
Cfa003872 Carpinus fangiana HOM05D004048 ORTHO05D004859 3.2e-13 80.1 53 69.8
DCAR_025216 Daucus carota HOM05D003118 ORTHO05D003618 5.5e-13 79.3 77 59.7
Os01g0225400 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 1.5e-10 71.2 43 81.4


User provided reference genes

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