Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0743G007 Amborella trichopoda HOM05D004480 ORTHO05D005546 3.5e-283 977.6 494 100.0
MBI07_g30868_MAGBIO Magnolia biondii HOM05D004480 ORTHO05D005546 8.5e-181 637.5 491 68.2
Hma1.2p1_0513F.1_g169740 Hydrangea macrophylla HOM05D004480 ORTHO05D005546 1.4e-175 620.2 483 67.5
MD01G1035500 Malus domestica HOM05D004480 ORTHO05D005546 1.7e-173 613.2 487 66.5
CSS0010781 Camellia sinensis var. sinensis HOM05D004480 ORTHO05D005546 6.5e-173 611.3 484 67.6
CsaV3_3G003300 Cucumis sativus L. HOM05D004480 ORTHO05D005546 1.1e-172 610.5 483 68.1
Manes.17G005700 Manihot esculenta HOM05D004480 ORTHO05D005546 1.1e-172 610.5 488 67.4
Thecc.05G221800 Theobroma cacao HOM05D004480 ORTHO05D005546 1.5e-172 610.1 484 66.7
Nn7g35785 Nelumbo nucifera HOM05D004480 ORTHO05D005546 1.6e-171 606.7 480 65.8
PGR119G0799 Punica granatum HOM05D004480 ORTHO05D005546 2.1e-171 606.3 484 66.5
MELO3C013997.2 Cucumis melo HOM05D004480 ORTHO05D005546 1.4e-170 603.6 497 65.0
GSVIVG01038269001 Vitis vinifera HOM05D004480 ORTHO05D005546 1.4e-170 603.6 481 68.4
Actinidia18384 Actinidia chinensis HOM05D004480 ORTHO05D005546 2.0e-169 599.7 487 66.7
MSTRG.22059 Avicennia marina HOM05D004480 ORTHO05D005546 2.0e-169 599.7 491 65.8
MD15G1320300 Malus domestica HOM05D004480 ORTHO05D005546 2.6e-169 599.4 494 65.0
Gorai.004G019100 Gossypium raimondii HOM05D004480 ORTHO05D005546 3.4e-169 599.0 479 66.6
Sed0006001 Sechium edule HOM05D004480 ORTHO05D005546 3.4e-169 599.0 484 66.1
Cfa008538 Carpinus fangiana HOM05D004480 ORTHO05D005546 5.7e-169 598.2 486 65.6
SalBow1G2458 Salvia bowleyana HOM05D004480 ORTHO05D005546 5.7e-169 598.2 491 64.8
SGA_v2.0_scaffold25G11023 Striga asiatica HOM05D004480 ORTHO05D005546 7.5e-169 597.8 488 64.5
Gohir.A08G013400 Gossypium hirsutum HOM05D004480 ORTHO05D005546 1.3e-168 597.0 479 66.2
SGA_v2.0_scaffold19G08907 Striga asiatica HOM05D004480 ORTHO05D005546 1.3e-168 597.0 491 65.2
Gohir.D08G023800 Gossypium hirsutum HOM05D004480 ORTHO05D005546 2.2e-168 596.3 479 66.4
Atru.chr11.1453 Acer truncatum HOM05D004480 ORTHO05D005546 3.7e-168 595.5 484 65.9
Atru.chr11.1483 Acer truncatum HOM05D004480 ORTHO05D005546 3.7e-168 595.5 484 65.9
CiPaw.01G203500 Carya illinoinensis HOM05D004480 ORTHO05D005546 3.1e-167 592.4 483 65.0
Ciclev10008180m.g Citrus clementina HOM05D004480 ORTHO05D005546 7.0e-167 591.3 487 65.1
Prupe.5G084300 Prunus persica HOM05D004480 ORTHO05D005546 7.0e-167 591.3 496 64.3
CANSAT21G2297 Cannabis sativa HOM05D004480 ORTHO05D005546 9.2e-167 590.9 479 65.6
TAR626G1520 Trochodendron aralioides HOM05D004480 ORTHO05D005546 1.2e-166 590.5 513 62.2
Hund12181 Selenicereus undatus HOM05D004480 ORTHO05D005546 1.6e-166 590.1 490 62.9
RcHm_v2.0_Chr1g0334711 Rosa chinensis HOM05D004480 ORTHO05D005546 2.7e-166 589.3 485 64.5
SalBow6G1632 Salvia bowleyana HOM05D004480 ORTHO05D005546 2.7e-166 589.3 477 65.8
Cc03_g16200 Coffea canephora HOM05D004480 ORTHO05D005546 7.8e-166 587.8 484 66.5
QL11p020579 Quercus lobata HOM05D004480 ORTHO05D005546 7.8e-166 587.8 485 64.3
FAN03G0050 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.3e-165 587.0 487 64.7
FAN01G1951 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.7e-165 586.6 481 64.9
RcHm_v2.0_Chr7g0210541 Rosa chinensis HOM05D004480 ORTHO05D005546 2.9e-165 585.9 485 63.9
Sc03g0007800 Simmondsia chinensis HOM05D004480 ORTHO05D005546 6.6e-165 584.7 483 64.6
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 8.6e-165 584.3 484 64.9
PGR083G0026 Punica granatum HOM05D004480 ORTHO05D005546 1.5e-164 583.6 484 64.9
Potri.017G001100 Populus trichocarpa HOM05D004480 ORTHO05D005546 1.9e-164 583.2 483 64.4
Eucgr.H00240 Eucalyptus grandis HOM05D004480 ORTHO05D005546 4.3e-164 582.0 485 63.9
TAR623G1647 Trochodendron aralioides HOM05D004480 ORTHO05D005546 4.3e-164 582.0 503 62.6
arahy.Tifrunner.gnm1.ann1.0BX3U4 Arachis hypogaea HOM05D004480 ORTHO05D005546 5.6e-164 581.6 484 64.5
BraA03t13931Z Brassica rapa HOM05D004480 ORTHO05D005546 5.6e-164 581.6 492 62.6
vmacro20035 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 7.3e-164 581.3 498 63.5
HanXRQChr14g0458331 Helianthus annuus HOM05D004480 ORTHO05D005546 9.5e-164 580.9 482 65.4
Duzib128G0969 Durio zibethinus HOM05D004480 ORTHO05D005546 2.8e-163 579.3 484 64.5
BcaC06g33042 Brassica carinata HOM05D004480 ORTHO05D005546 4.7e-163 578.6 490 62.2
C07p46260 Brassica napus HOM05D004480 ORTHO05D005546 4.7e-163 578.6 490 63.3
Glyma.18G043300 Glycine max HOM05D004480 ORTHO05D005546 4.7e-163 578.6 486 63.6
A03p48230 Brassica napus HOM05D004480 ORTHO05D005546 8.0e-163 577.8 492 62.8
HanXRQChr15g0465141 Helianthus annuus HOM05D004480 ORTHO05D005546 1.0e-162 577.4 482 64.7
Ca_17076_v3 Cicer arietinum L. HOM05D004480 ORTHO05D005546 2.3e-162 576.2 484 63.0
BcaB01g00536 Brassica carinata HOM05D004480 ORTHO05D005546 8.9e-162 574.3 492 62.2
Sopen01g003100 Solanum pennellii HOM05D004480 ORTHO05D005546 1.2e-161 573.9 487 63.4
Sed0005158 Sechium edule HOM05D004480 ORTHO05D005546 4.4e-161 572.0 375 76.3
FvH4_4g10760 Fragaria vesca HOM05D004480 ORTHO05D005546 5.8e-161 571.6 481 62.4
Lj1g0018422 Lotus japonicus HOM05D004480 ORTHO05D005546 1.3e-160 570.5 484 63.8
Phvul.001G227600 Phaseolus vulgaris HOM05D004480 ORTHO05D005546 1.3e-160 570.5 494 61.7
BraA01t02261Z Brassica rapa HOM05D004480 ORTHO05D005546 1.7e-160 570.1 492 61.4
FAN12G1968 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.2e-160 569.7 484 62.2
FAN12G3644 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.9e-160 569.3 481 62.4
Sabra17G0005500 Salix brachista HOM05D000001 ORTHO05D005546 4.9e-160 568.5 534 59.2
BraA09t39892Z Brassica rapa HOM05D004480 ORTHO05D005546 6.4e-160 568.2 490 62.0
Migut.N03010 Erythranthe guttata HOM05D004480 ORTHO05D005546 6.4e-160 568.2 485 63.3
vmacro00734 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 8.3e-160 567.8 530 60.4
Os01g0888700 Oryza sativa ssp. japonica HOM05D004480 ORTHO05D005546 1.4e-159 567.0 484 62.6
Lalb_Chr08g0233091 Lupinus albus HOM05D004480 ORTHO05D005546 2.4e-159 566.2 491 63.1
THA.LOC104827565 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 4.1e-159 565.5 484 64.0
BolC1t02850H Brassica oleracea HOM05D004480 ORTHO05D005546 9.2e-159 564.3 493 60.9
Dinv41802 Davidia involucrata HOM05D004480 ORTHO05D005546 9.2e-159 564.3 351 80.6
A09p44300 Brassica napus HOM05D004480 ORTHO05D005546 1.2e-158 563.9 488 61.9
Medtr4g094615 Medicago truncatula HOM05D004480 ORTHO05D005546 1.6e-158 563.5 485 61.6
BcaNung06395 Brassica carinata HOM05D004480 ORTHO05D005546 2.7e-158 562.8 490 60.8
C01p29210 Brassica napus HOM05D004480 ORTHO05D005546 2.7e-158 562.8 490 60.8
Sp5g10950 Schrenkiella parvula HOM05D004480 ORTHO05D005546 2.7e-158 562.8 493 60.4
Solyc01g007120.3 Solanum lycopersicum HOM05D004480 ORTHO05D005546 4.6e-158 562.0 487 61.2
BolC7t45142H Brassica oleracea HOM05D004480 ORTHO05D005546 6.0e-158 561.6 488 61.5
AL5G31690 Arabidopsis lyrata HOM05D004480 ORTHO05D005546 1.3e-157 560.5 488 61.1
PGSC0003DMG400021321 Solanum tuberosum HOM05D004480 ORTHO05D005546 1.3e-157 560.5 483 62.3
A01p23550 Brassica napus HOM05D004480 ORTHO05D005546 1.7e-157 560.1 490 60.8
TPR.G4936 Trifolium pratense HOM05D004480 ORTHO05D005546 2.3e-157 559.7 481 61.7
DCAR_011737 Daucus carota HOM05D004480 ORTHO05D005546 3.9e-157 558.9 515 61.0
VMungo1383G0315 Vigna mungo HOM05D004480 ORTHO05D005546 3.9e-157 558.9 469 64.6
Oeu019179.1 Olea europaea HOM05D004480 ORTHO05D005546 5.0e-157 558.5 527 57.3
Nitab4.5_0002844g0040 Nicotiana tabacum HOM05D004480 ORTHO05D005546 1.9e-156 556.6 493 61.9
FvH4_7g06440 Fragaria vesca HOM05D004480 ORTHO05D005546 3.3e-156 555.8 352 78.1
Carub.0005s1764 Capsella rubella HOM05D004480 ORTHO05D005546 5.6e-156 555.1 488 60.9
CARHR160850 Cardamine hirsuta HOM05D004480 ORTHO05D005546 5.6e-156 555.1 494 60.9
Peaxi162Scf00586g00512 Petunia axillaris HOM05D004480 ORTHO05D005546 7.3e-156 554.7 490 61.6
Zm00001eb145320 Zea mays HOM05D004480 ORTHO05D005546 1.2e-155 553.9 475 61.9
TWI74G1000 Tripterygium wilfordii HOM05D004480 ORTHO05D005546 1.1e-154 550.8 480 63.3
Glyma.11G213400 Glycine max HOM05D004480 ORTHO05D005546 3.1e-154 549.3 345 78.3
HanXRQChr15g0464981 Helianthus annuus HOM05D004480 ORTHO05D005546 5.2e-154 548.5 330 81.2
VMungo1309G1911 Vigna mungo HOM05D004480 ORTHO05D005546 5.2e-154 548.5 464 64.2
AT3G51270 Arabidopsis thaliana HOM05D004480 ORTHO05D005546 6.8e-154 548.1 377 72.1
ECA248G1292 Erigeron canadensis HOM05D004480 ORTHO05D005546 6.8e-154 548.1 474 62.4
Dinv39175 Davidia involucrata HOM05D004480 ORTHO05D005546 1.2e-153 547.4 460 64.3
BcaNung00392 Brassica carinata HOM05D004480 ORTHO05D005546 2.0e-153 546.6 491 59.7
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.9e-152 542.7 484 62.0
Rhsim09G0001300 Rhododendron simsii HOM05D004480 ORTHO05D005546 2.9e-152 542.7 451 65.0
Zm00001eb365940 Zea mays HOM05D004480 ORTHO05D005546 1.1e-151 540.8 479 61.0
arahy.Tifrunner.gnm1.ann1.JT43NG Arachis hypogaea HOM05D004480 ORTHO05D005546 1.9e-151 540.0 484 61.4
THA.LOC104802357 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 1.9e-151 540.0 485 61.4
Thhalv10010355m.g Eutrema salsugineum HOM05D004480 ORTHO05D005546 2.4e-151 539.7 492 58.9
Psat7g090480 Pisum sativum HOM05D004480 ORTHO05D005546 4.6e-150 535.4 378 71.2
C08p26540 Brassica napus HOM05D004480 ORTHO05D005546 3.9e-149 532.3 497 58.8
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 5.0e-149 531.9 476 61.1
PSO732G0488 Papaver somniferum HOM05D004480 ORTHO05D005546 8.6e-149 531.2 478 60.7
Nitab4.5_0002686g0020 Nicotiana tabacum HOM05D004480 ORTHO05D005546 3.3e-148 529.3 503 59.2
PSO675G8718 Papaver somniferum HOM05D004480 ORTHO05D005546 3.3e-148 529.3 474 60.8
Mapoly0052s0036 Marchantia polymorpha HOM05D004480 ORTHO05D005546 2.8e-147 526.2 484 56.2
BolC8t50268H Brassica oleracea HOM05D004480 ORTHO05D005546 6.2e-147 525.0 507 57.4
Cpa.g.sc9.237 Carica papaya HOM05D004480 ORTHO05D005546 5.8e-145 518.5 487 58.9
BcaC09g50090 Brassica carinata HOM05D004480 ORTHO05D005546 1.3e-144 517.3 346 74.0
Haze_11102 Corylus avellana HOM05D004480 ORTHO05D005546 3.7e-144 515.8 475 60.4
COL.COLO4_23990 Corchorus olitorius HOM05D004480 ORTHO05D005546 1.9e-143 513.5 489 58.7
Aqoxy2G00126 Aquilegia oxysepala HOM05D004480 ORTHO05D005546 2.1e-142 510.0 495 56.4
unitig_62.g23773 Utricularia gibba HOM05D004480 ORTHO05D005546 6.0e-142 508.4 514 57.8
Lju124A7T24 Lonicera japonica HOM05D004480 ORTHO05D005546 1.9e-140 503.4 279 86.4
Oeu061379.1 Olea europaea HOM05D004480 ORTHO05D005546 7.3e-140 501.5 279 86.0
AUR62001702 Chenopodium quinoa HOM05D004480 ORTHO05D005546 3.6e-139 499.2 487 57.1
SMO203G0211 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 6.8e-138 495.0 331 71.6
CAN.G574.17 Capsicum annuum HOM05D004480 ORTHO05D005546 8.4e-136 488.0 436 61.0
Lsat_1_v5_gn_5_33821 Lactuca sativa HOM05D004480 ORTHO05D005546 1.9e-135 486.9 485 57.7
AagrBONN_evm.TU.Sc2ySwM_228.3019 Anthoceros agrestis HOM05D004480 ORTHO05D005546 3.2e-135 486.1 325 72.3
Pp3c20_22360 Physcomitrium patens HOM05D004480 ORTHO05D005546 4.1e-135 485.7 476 55.5
Duzib177G0198 Durio zibethinus HOM05D004480 ORTHO05D005546 9.2e-135 484.6 416 63.0
CDE09G0719 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 8.1e-131 471.5 387 63.6
CDE02G2467 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 2.4e-130 469.9 485 54.8
ClCG00G001030 Citrullus lanatus HOM05D004480 ORTHO05D005546 8.1e-123 444.9 330 71.2
CDE09G0674 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 2.6e-121 439.9 470 53.8
SHI53263 Sapria himalayana HOM05D004480 ORTHO05D005546 3.4e-121 439.5 332 66.9
CDE02G0168 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.4e-119 434.1 347 64.3
CBR_g22944 Chara braunii HOM05D004480 ORTHO05D005546 2.7e-118 429.9 277 72.2
ClCG10G003270 Citrullus lanatus HOM05D004480 ORTHO05D005546 7.4e-116 421.8 569 48.9
CDE09G1409 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 3.4e-113 412.9 463 52.3
SEGI_41177 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 7.4e-108 395.2 379 58.3
AUR62020079 Chenopodium quinoa HOM05D004480 ORTHO05D005546 1.1e-106 391.3 489 49.7
CDE09G0134 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 7.9e-102 375.2 286 67.5
MCO09G317 Micromonas commoda HOM05D004480 ORTHO05D005546 4.8e-99 365.9 332 56.0
PRCOL_00001861 Prasinoderma coloniale HOM05D004480 ORTHO05D005546 2.2e-96 357.1 465 46.0
Migut.O00494 Erythranthe guttata HOM05D004480 ORTHO05D005546 8.8e-77 292.0 167 85.0
Cre03.g159900 Chlamydomonas reinhardtii HOM05D004480 ORTHO05D005546 7.0e-74 282.3 255 55.7
Cfa009489 Carpinus fangiana HOM05D004480 ORTHO05D005546 5.0e-56 223.0 376 38.3
Ciclev10020879m.g Citrus clementina HOM05D004480 ORTHO05D005546 6.1e-54 216.1 479 38.8
HPP92_020625 Vanilla planifolia HOM05D004480 ORTHO05D005546 3.3e-39 167.2 263 44.1
SMO327G0006 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 6.8e-37 159.5 120 68.3
ClCG00G000020 Citrullus lanatus HOM05D004480 ORTHO05D005546 5.4e-34 149.8 127 66.1
Zm00001eb233680 Zea mays HOM05D009386 ORTHO05D011419 1.8e-29 134.8 148 52.7
SEGI_14248 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 4.0e-29 133.7 81 77.8
Zm00001eb393850 Zea mays HOM05D009386 ORTHO05D011419 1.2e-20 105.5 109 54.1
Zm00001eb011520 Zea mays HOM05D009386 ORTHO05D011419 2.6e-20 104.4 161 44.1
FAN07G0363 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.1e-17 94.7 220 35.9
Lju124A7T25 Lonicera japonica HOM05D004480 ORTHO05D005546 1.1e-13 82.4 223 34.1
Oeu061378.1 Olea europaea HOM05D004480 ORTHO05D005546 2.8e-06 57.8 208 28.4


User provided reference genes

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