Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0736G170 Amborella trichopoda HOM05D002270 ORTHO05D002866 2.0e-272 941.8 465 100.0
Aqoxy7G03985 Aquilegia oxysepala HOM05D002270 ORTHO05D002866 1.7e-114 417.2 467 46.0
Nn8g38745 Nelumbo nucifera HOM05D002270 ORTHO05D002866 1.2e-112 411.0 483 46.6
Dinv37885 Davidia involucrata HOM05D002270 ORTHO05D002866 4.3e-110 402.5 481 45.5
TAR636G1163 Trochodendron aralioides HOM05D002270 ORTHO05D002866 1.3e-109 401.0 468 46.6
PSO144G0138 Papaver somniferum HOM05D002270 ORTHO05D002866 2.2e-109 400.2 470 46.2
Atru.chr1.3813 Acer truncatum HOM05D002270 ORTHO05D002866 4.8e-109 399.1 473 47.6
Atru.chr1.3816 Acer truncatum HOM05D002270 ORTHO05D002866 1.1e-108 397.9 470 47.4
MSTRG.10966 Avicennia marina HOM05D002270 ORTHO05D002866 1.1e-108 397.9 477 47.2
PSO423G0075 Papaver somniferum HOM05D002270 ORTHO05D002866 4.1e-108 396.0 471 45.9
Cfa003549 Carpinus fangiana HOM05D002270 ORTHO05D002866 5.9e-107 392.1 482 45.0
vmacro22219 Vaccinium macrocarpon HOM05D002270 ORTHO05D002866 2.2e-106 390.2 448 46.2
Gohir.A10G056600 Gossypium hirsutum HOM05D002270 ORTHO05D002866 3.8e-106 389.4 470 46.8
Gohir.D10G058500 Gossypium hirsutum HOM05D002270 ORTHO05D002866 5.0e-106 389.0 470 46.8
Gorai.011G062600 Gossypium raimondii HOM05D002270 ORTHO05D002866 6.5e-106 388.7 470 46.8
COL.COLO4_30723 Corchorus olitorius HOM05D002270 ORTHO05D002866 8.5e-106 388.3 471 45.9
Ciclev10024676m.g Citrus clementina HOM05D002270 ORTHO05D002866 3.2e-105 386.3 484 45.9
HanXRQChr09g0276661 Helianthus annuus HOM05D002270 ORTHO05D002866 7.2e-105 385.2 488 44.3
SGA_v2.0_scaffold71G23844 Striga asiatica HOM05D002270 ORTHO05D002866 9.4e-105 384.8 476 44.7
Haze_16005 Corylus avellana HOM05D002270 ORTHO05D002866 1.2e-104 384.4 496 44.2
Cc04_g01520 Coffea canephora HOM05D002270 ORTHO05D002866 1.5e-102 377.5 484 43.2
Prupe.3G044200 Prunus persica HOM05D002270 ORTHO05D002866 2.6e-102 376.7 469 44.6
Duzib235G1111 Durio zibethinus HOM05D002270 ORTHO05D002866 4.4e-102 375.9 464 46.3
HPP92_008118 Vanilla planifolia HOM05D002270 ORTHO05D002866 2.8e-101 373.2 467 43.0
Sopen04g028450 Solanum pennellii HOM05D002270 ORTHO05D002866 6.3e-101 372.1 482 43.8
Migut.H01763 Erythranthe guttata HOM05D002270 ORTHO05D002866 1.8e-100 370.5 494 43.5
ECA232G4141 Erigeron canadensis HOM05D002270 ORTHO05D002866 2.4e-100 370.2 491 44.0
CAN.G1010.9 Capsicum annuum HOM05D002270 ORTHO05D002866 3.1e-100 369.8 481 43.5
ClCG09G000860 Citrullus lanatus HOM05D002270 ORTHO05D002866 5.3e-100 369.0 472 44.5
Sed0013702 Sechium edule HOM05D002270 ORTHO05D002866 5.3e-100 369.0 467 44.1
MD05G1009600 Malus domestica HOM05D002270 ORTHO05D002866 9.1e-100 368.2 484 44.4
Rhsim07G0217300 Rhododendron simsii HOM05D002270 ORTHO05D002866 4.5e-99 365.9 512 41.8
Lsat_1_v5_gn_4_95020 Lactuca sativa HOM05D002270 ORTHO05D002866 5.9e-99 365.5 486 41.8
Mapoly0033s0024 Marchantia polymorpha HOM05D002270 ORTHO05D002866 2.9e-98 363.2 474 44.3
CANSAT56G0650 Cannabis sativa HOM05D002270 ORTHO05D002866 3.8e-98 362.8 497 42.7
CsaV3_7G034610 Cucumis sativus L. HOM05D002270 ORTHO05D002866 3.8e-98 362.8 468 43.4
QL05p009063 Quercus lobata HOM05D002270 ORTHO05D002866 5.5e-97 359.0 478 45.0
SalBow6G4013 Salvia bowleyana HOM05D002270 ORTHO05D002866 5.5e-97 359.0 507 39.8
PGR142G3590 Punica granatum HOM05D002270 ORTHO05D002866 7.2e-97 358.6 471 43.3
TWI09G1355 Tripterygium wilfordii HOM05D002270 ORTHO05D002866 9.4e-97 358.2 472 43.6
FvH4_6g34300 Fragaria vesca HOM05D002270 ORTHO05D002866 1.2e-96 357.8 482 42.3
FAN14G4121 Fragaria x ananassa HOM05D002270 ORTHO05D002866 1.2e-96 357.8 482 42.3
Potri.017G039100 Populus trichocarpa HOM05D002270 ORTHO05D002866 1.6e-96 357.5 473 44.4
RcHm_v2.0_Chr2g0144641 Rosa chinensis HOM05D002270 ORTHO05D002866 3.6e-96 356.3 476 43.3
FAN05G0510 Fragaria x ananassa HOM05D002270 ORTHO05D002866 6.1e-96 355.5 467 42.4
Lj3g0006373 Lotus japonicus HOM05D002270 ORTHO05D002866 8.0e-96 355.1 472 43.6
FAN02G3927 Fragaria x ananassa HOM05D002270 ORTHO05D002866 1.8e-95 354.0 467 42.4
Phvul.010G134100 Phaseolus vulgaris HOM05D002270 ORTHO05D002866 2.0e-94 350.5 471 43.5
Aa31LG2G3520 Aethionema arabicum HOM05D002270 ORTHO05D002866 2.6e-94 350.1 478 42.7
Rhsim08G0236800 Rhododendron simsii HOM05D002270 ORTHO05D002866 4.4e-94 349.4 533 37.7
arahy.Tifrunner.gnm1.ann1.B3D1QM Arachis hypogaea HOM05D002270 ORTHO05D002866 9.7e-94 348.2 467 42.8
arahy.Tifrunner.gnm1.ann1.VXKY2I Arachis hypogaea HOM05D002270 ORTHO05D002866 2.8e-93 346.7 467 42.6
Glyma.07G035600 Glycine max HOM05D002270 ORTHO05D002866 2.8e-93 346.7 465 42.6
Thhalv10017991m.g Eutrema salsugineum HOM05D002270 ORTHO05D002866 6.3e-93 345.5 477 43.0
Manes.04G142500 Manihot esculenta HOM05D002270 ORTHO05D002866 1.4e-92 344.4 471 42.7
Glyma.16G004800 Glycine max HOM05D002270 ORTHO05D002866 2.4e-92 343.6 468 42.1
Pp3c8_22130 Physcomitrium patens HOM05D002270 ORTHO05D002866 2.4e-92 343.6 484 40.9
Sp5g22070 Schrenkiella parvula HOM05D002270 ORTHO05D002866 3.1e-92 343.2 473 43.1
Zm00001eb290580 Zea mays HOM05D002270 ORTHO05D002866 7.0e-92 342.0 482 42.1
AL2G25500 Arabidopsis lyrata HOM05D002270 ORTHO05D002866 1.2e-91 341.3 474 42.8
AT1G67120 Arabidopsis thaliana HOM05D002270 ORTHO05D002866 1.2e-91 341.3 472 43.2
Hund05751 Selenicereus undatus HOM05D002270 ORTHO05D002866 2.9e-90 336.7 476 41.0
Lj5C40G12 Lonicera japonica HOM05D002270 ORTHO05D002866 1.1e-89 334.7 476 41.4
GSVIVG01016794001 Vitis vinifera HOM05D002270 ORTHO05D002866 4.2e-89 332.8 373 48.0
C02p22490 Brassica napus HOM05D002270 ORTHO05D002866 9.4e-89 331.6 479 42.0
Carub.0002s1342 Capsella rubella HOM05D002270 ORTHO05D002866 3.6e-88 329.7 480 42.1
CARHR059570 Cardamine hirsuta HOM05D002270 ORTHO05D002866 4.7e-88 329.3 466 41.6
A02p14000 Brassica napus HOM05D002270 ORTHO05D002866 8.0e-88 328.6 477 42.3
BraA02t06460Z Brassica rapa HOM05D002270 ORTHO05D002866 3.0e-87 326.6 473 41.9
Oeu047969.1 Olea europaea HOM05D002270 ORTHO05D002866 1.3e-85 321.2 473 40.6
Lsat_1_v5_gn_7_1960 Lactuca sativa HOM05D002270 ORTHO05D002866 3.7e-85 319.7 448 40.8
THA.LOC104807245 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 8.3e-85 318.5 458 42.6
Sabra17G0026200 Salix brachista HOM05D002270 ORTHO05D002866 3.1e-84 316.6 576 36.1
CDE12G0416 Ceratophyllum demersum HOM05D002270 ORTHO05D002866 7.0e-84 315.5 461 41.0
Medtr8g018890 Medicago truncatula HOM05D002270 ORTHO05D002866 7.7e-83 312.0 483 40.0
Psat4g180280 Pisum sativum HOM05D002270 ORTHO05D002866 1.3e-82 311.2 493 39.8
Ca_23356_v3 Cicer arietinum L. HOM05D002270 ORTHO05D002866 5.5e-81 305.8 414 43.5
Ah.08g216540 Amaranthus hybridus HOM05D002270 ORTHO05D002866 1.6e-80 304.3 523 36.3
Actinidia32171 Actinidia chinensis HOM05D002270 ORTHO05D002866 2.7e-80 303.5 465 40.2
THA.LOC104805560 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 1.4e-79 301.2 455 39.6
EL10Ac7g16387 Beta vulgaris HOM05D002270 ORTHO05D002866 4.0e-79 299.7 422 41.2
Carub.0002s1105 Capsella rubella HOM05D002270 ORTHO05D002866 1.2e-78 298.1 376 46.0
Lsat_1_v5_gn_7_1981 Lactuca sativa HOM05D002270 ORTHO05D002866 1.2e-75 288.1 434 39.4
Cpa.g.sc30.16 Carica papaya HOM05D002270 ORTHO05D002866 2.5e-73 280.4 295 48.5
Thecc.06G117100 Theobroma cacao HOM05D002270 ORTHO05D002866 4.0e-71 273.1 298 47.7
Solyc04g072270.1 Solanum lycopersicum HOM05D002270 ORTHO05D002866 1.3e-69 268.1 409 39.9
Peaxi162Scf00226g00824 Petunia axillaris HOM05D002270 ORTHO05D002866 5.4e-68 262.7 398 39.4
CBR_g742 Chara braunii HOM05D002270 ORTHO05D002866 4.6e-67 259.6 484 33.5
AUR62009863 Chenopodium quinoa HOM05D002270 ORTHO05D002866 8.6e-66 255.4 457 37.0
CSS0023775 Camellia sinensis var. sinensis HOM05D002270 ORTHO05D002866 4.4e-62 243.0 442 34.2
Nitab4.5_0000433g0190 Nicotiana tabacum HOM05D002270 ORTHO05D002866 5.8e-62 242.7 399 38.1
Eucgr.J02836 Eucalyptus grandis HOM05D002270 ORTHO05D002866 9.2e-60 235.3 252 48.4
VMungo0331G1745 Vigna mungo HOM05D000103 ORTHO05D000049 9.2e-60 235.3 302 43.7
AUR62001507 Chenopodium quinoa HOM05D002270 ORTHO05D002866 8.6e-58 228.8 410 36.6
COL.COLO4_12569 Corchorus olitorius HOM05D002270 ORTHO05D002866 1.1e-57 228.4 387 37.5
MELO3C024369.2 Cucumis melo HOM05D002270 ORTHO05D002866 4.3e-57 226.5 248 47.6
TPR.G29953 Trifolium pratense HOM05D002270 ORTHO05D002866 2.8e-56 223.8 410 35.6
Os10g0456950 Oryza sativa ssp. japonica HOM05D002270 ORTHO05D002866 3.4e-54 216.9 296 41.6
BcaC05g27865 Brassica carinata HOM05D001285 ORTHO05D000199 5.8e-54 216.1 463 35.2
BcaC03g14803 Brassica carinata HOM05D002270 ORTHO05D002866 1.1e-52 211.8 430 34.7
AagrBONN_evm.TU.Sc2ySwM_117.1506 Anthoceros agrestis HOM05D002270 ORTHO05D002866 7.1e-52 209.1 299 39.1
DCAR_014031 Daucus carota HOM05D002270 ORTHO05D002866 2.3e-50 204.1 214 51.9
AagrBONN_evm.TU.Sc2ySwM_344.4174 Anthoceros agrestis HOM05D002270 ORTHO05D002866 8.6e-50 202.2 247 43.7
Nitab4.5_0003025g0030 Nicotiana tabacum HOM05D002270 ORTHO05D002866 8.6e-50 202.2 323 36.8
QL01p053604 Quercus lobata HOM05D002270 ORTHO05D002866 1.2e-48 198.4 400 37.5
SEGI_23610 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 1.4e-47 194.9 260 47.7
TPR.G9777 Trifolium pratense HOM05D002270 ORTHO05D002866 8.4e-45 185.7 282 39.0
QL01p053642 Quercus lobata HOM05D002270 ORTHO05D002866 7.1e-44 182.6 365 37.8
Lalb_Chr20g0113881 Lupinus albus HOM05D002270 ORTHO05D002866 7.8e-43 179.1 274 38.3
TPR.G36181 Trifolium pratense HOM05D002270 ORTHO05D002866 6.6e-42 176.0 224 45.5
CiPaw.01G221300 Carya illinoinensis HOM05D002270 ORTHO05D002866 9.6e-41 172.2 124 65.3
Nitab4.5_0003025g0040 Nicotiana tabacum HOM05D002270 ORTHO05D002866 1.1e-39 168.7 126 61.9
SMO141G0091 Selaginella moellendorffii HOM05D002270 ORTHO05D002866 5.2e-39 166.4 126 59.5
unitig_22.g5235 Utricularia gibba HOM05D002270 ORTHO05D002866 4.4e-38 163.3 133 59.4
Psat4g187880 Pisum sativum HOM05D002270 ORTHO05D002866 2.7e-35 154.1 132 58.3
Cre03.g161800 Chlamydomonas reinhardtii HOM05D002270 ORTHO05D002866 3.0e-34 150.6 128 53.9
PRCOL_00003697 Prasinoderma coloniale HOM05D002270 ORTHO05D002866 9.6e-33 145.6 124 54.0
MCO14G508 Micromonas commoda HOM05D002270 ORTHO05D002866 3.4e-30 137.1 125 49.6
SEGI_39038 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 9.9e-30 135.6 151 48.3
QL01p054873 Quercus lobata HOM05D002270 ORTHO05D002866 1.1e-28 132.1 174 46.6
C05p38660 Brassica napus HOM05D002270 ORTHO05D002866 2.1e-27 127.9 106 55.7
Lalb_Chr20g0113891 Lupinus albus HOM05D002270 ORTHO05D002866 3.9e-26 123.6 79 69.6
VMungo0464G1016 Vigna mungo HOM05D002270 ORTHO05D002866 1.5e-25 121.7 78 70.5
SEGI_35812 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 2.5e-25 120.9 194 41.2
Cpa.g.sc30.17 Carica papaya HOM05D002270 ORTHO05D002866 4.3e-25 120.2 171 39.8
TPR.G23043 Trifolium pratense HOM05D002270 ORTHO05D002866 2.0e-22 111.3 78 64.1
Solyc04g072260.3 Solanum lycopersicum HOM05D002270 ORTHO05D002866 3.4e-22 110.5 72 65.3
Peaxi162Scf00226g00823 Petunia axillaris HOM05D002270 ORTHO05D002866 4.5e-22 110.2 72 63.9
SEGI_19104 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 5.5e-20 103.2 135 42.2
QL93p0107_0362 Quercus lobata HOM05D002270 ORTHO05D002866 7.1e-20 102.8 139 44.6
Cc11_g02690 Coffea canephora HOM05D002270 ORTHO05D002866 3.3e-17 94.0 84 53.6
C05p38670 Brassica napus HOM05D002270 ORTHO05D002866 2.8e-16 90.9 159 38.4
QL93p0381_0021 Quercus lobata HOM05D002270 ORTHO05D002866 5.3e-15 86.7 137 38.7
Oeu039944.3 Olea europaea HOM05D002270 ORTHO05D002866 4.5e-14 83.6 128 37.5
Cc02_g21460 Coffea canephora HOM05D002270 ORTHO05D002866 1.0e-13 82.4 55 61.8
SEGI_27232 Sequoiadendron giganteum HOM05D002270 ORTHO05D000001 3.8e-13 80.5 117 38.5
Sc15g0000370 Simmondsia chinensis HOM05D002270 ORTHO05D002866 1.4e-12 78.6 116 37.1
SHI16813 Sapria himalayana HOM05D002270 ORTHO05D002866 2.5e-12 77.8 116 35.3
COL.COLO4_12568 Corchorus olitorius HOM05D002270 ORTHO05D002866 3.2e-12 77.4 116 37.1
ATR0736G169 Amborella trichopoda HOM05D002270 ORTHO05D002866 4.2e-12 77.0 117 36.8
arahy.Tifrunner.gnm1.ann1.I4EX6M Arachis hypogaea HOM05D002270 ORTHO05D002866 7.1e-12 76.3 118 35.6
VMungo0464G0518 Vigna mungo HOM05D002270 ORTHO05D002866 2.1e-11 74.7 115 35.7
Cpa.g.sc30.12 Carica papaya HOM05D002270 ORTHO05D002866 4.6e-11 73.6 116 36.2
Lalb_Chr20g0113901 Lupinus albus HOM05D002270 ORTHO05D002866 4.6e-11 73.6 116 36.2
BolC2t08403H Brassica oleracea HOM05D002270 ORTHO05D002866 1.8e-10 71.6 98 37.8
ATR0736G011 Amborella trichopoda HOM05D002270 ORTHO05D002866 3.9e-10 70.5 102 38.2
Psat4g184160 Pisum sativum HOM05D002270 ORTHO05D002866 3.9e-10 70.5 142 30.3
C02p22540 Brassica napus HOM05D002270 ORTHO05D002866 5.1e-10 70.1 117 34.2
BolC2t08408H Brassica oleracea HOM05D002270 ORTHO05D002866 5.1e-10 70.1 117 34.2
SEGI_24765 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 6.7e-10 69.7 126 35.7
vmacro22217 Vaccinium macrocarpon HOM05D002270 ORTHO05D002866 1.1e-09 68.9 119 34.5
arahy.Tifrunner.gnm1.ann1.3D1K9T Arachis hypogaea HOM05D002270 ORTHO05D002866 5.7e-09 66.6 123 33.3
Lalb_Chr20g0113911 Lupinus albus HOM05D002270 ORTHO05D002866 5.7e-09 66.6 101 36.6
TAR636G1846 Trochodendron aralioides HOM05D002270 ORTHO05D002866 1.6e-08 65.1 154 28.6
VMungo0331G1298 Vigna mungo HOM05D002270 ORTHO05D002866 3.7e-08 63.9 120 32.5
Cre02.g095250 Chlamydomonas reinhardtii HOM05D002270 ORTHO05D002866 8.2e-08 62.8 119 30.3
Cre02.g095550 Chlamydomonas reinhardtii HOM05D053512 ORTHO05D012763 1.8e-07 61.6 119 30.3
Nitab4.5_0000433g0200 Nicotiana tabacum HOM05D002270 ORTHO05D002866 1.8e-07 61.6 123 30.9


User provided reference genes

Program Settings