Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0736G010 Amborella trichopoda HOM05D004257 ORTHO05D005202 4.3e-192 674.5 339 100.0
Nn3g19680 Nelumbo nucifera HOM05D004257 ORTHO05D005202 2.4e-142 509.2 343 74.9
DCAR_010071 Daucus carota HOM05D004257 ORTHO05D005202 1.3e-140 503.4 340 74.1
PSO832G0932 Papaver somniferum HOM05D004257 ORTHO05D005202 1.3e-140 503.4 348 72.1
Dinv06012 Davidia involucrata HOM05D004257 ORTHO05D005202 1.7e-140 503.1 341 73.6
Aqoxy2G03662 Aquilegia oxysepala HOM05D004257 ORTHO05D005202 2.3e-140 502.7 341 73.3
TAR365G0817 Trochodendron aralioides HOM05D004257 ORTHO05D005202 2.3e-140 502.7 344 73.8
Ah.04g163130 Amaranthus hybridus HOM05D004257 ORTHO05D005202 5.0e-140 501.5 341 72.7
Aqoxy5G00217 Aquilegia oxysepala HOM05D004257 ORTHO05D005202 6.5e-140 501.1 323 77.1
PSO210G0560 Papaver somniferum HOM05D004257 ORTHO05D005202 1.5e-139 500.0 348 71.6
Hma1.2p1_0075F.1_g039210 Hydrangea macrophylla HOM05D004257 ORTHO05D005202 1.9e-139 499.6 341 73.0
MBI07_g16916_MAGBIO Magnolia biondii HOM05D004257 ORTHO05D005202 4.2e-139 498.4 315 75.6
CSS0006901 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 9.5e-139 497.3 342 72.2
CSS0016221 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 9.5e-139 497.3 342 72.2
COL.COLO4_04031 Corchorus olitorius HOM05D004257 ORTHO05D005202 9.5e-139 497.3 345 71.9
Potri.002G037400 Populus trichocarpa HOM05D004257 ORTHO05D005202 6.1e-138 494.6 342 72.2
Sabra02G0030200 Salix brachista HOM05D004257 ORTHO05D005202 6.1e-138 494.6 342 72.2
Potri.005G225700 Populus trichocarpa HOM05D004257 ORTHO05D005202 1.0e-137 493.8 343 72.3
Thecc.01G256600 Theobroma cacao HOM05D004257 ORTHO05D005202 1.0e-137 493.8 345 71.3
Duzib138G0002 Durio zibethinus HOM05D004257 ORTHO05D005202 1.8e-137 493.0 336 72.9
Nitab4.5_0004454g0010 Nicotiana tabacum HOM05D004257 ORTHO05D005202 1.8e-137 493.0 344 71.8
PGSC0003DMG402031052 Solanum tuberosum HOM05D004257 ORTHO05D005202 1.8e-137 493.0 343 72.0
TAR362G0002 Trochodendron aralioides HOM05D004257 ORTHO05D005202 1.8e-137 493.0 344 72.7
Hund06906 Selenicereus undatus HOM05D004257 ORTHO05D005202 2.3e-137 492.7 327 73.1
CAN.G637.23 Capsicum annuum HOM05D004257 ORTHO05D005202 3.0e-137 492.3 341 72.1
Gorai.001G178500 Gossypium raimondii HOM05D004257 ORTHO05D005202 4.0e-137 491.9 345 71.0
PSO675G8702 Papaver somniferum HOM05D004257 ORTHO05D005202 5.2e-137 491.5 348 69.5
FAN20G1479 Fragaria x ananassa HOM05D004257 ORTHO05D005202 8.9e-137 490.7 346 71.4
Actinidia38939 Actinidia chinensis HOM05D004257 ORTHO05D005202 1.2e-136 490.3 341 71.3
Migut.O00233 Erythranthe guttata HOM05D004257 ORTHO05D005202 1.2e-136 490.3 347 71.2
Gohir.D07G155600 Gossypium hirsutum HOM05D004257 ORTHO05D005202 1.2e-136 490.3 345 70.7
Peaxi162Scf00171g00722 Petunia axillaris HOM05D004257 ORTHO05D005202 1.2e-136 490.3 340 72.6
Duzib133G1463 Durio zibethinus HOM05D004257 ORTHO05D005202 1.5e-136 490.0 345 70.1
FAN27G2888 Fragaria x ananassa HOM05D004257 ORTHO05D005202 1.5e-136 490.0 346 71.4
Gohir.A07G149400 Gossypium hirsutum HOM05D004257 ORTHO05D005202 1.5e-136 490.0 345 70.7
CsaV3_3G022160 Cucumis sativus L. HOM05D004257 ORTHO05D005202 2.0e-136 489.6 349 70.5
PSO675G6112 Papaver somniferum HOM05D004257 ORTHO05D005202 2.0e-136 489.6 348 69.5
RcHm_v2.0_Chr6g0287891 Rosa chinensis HOM05D004257 ORTHO05D005202 2.0e-136 489.6 353 70.0
TWI12G0832 Tripterygium wilfordii HOM05D004257 ORTHO05D005202 2.0e-136 489.6 342 70.8
Eucgr.K03257 Eucalyptus grandis HOM05D004257 ORTHO05D005202 3.4e-136 488.8 350 70.6
FAN24G1061 Fragaria x ananassa HOM05D004257 ORTHO05D005202 4.4e-136 488.4 345 71.6
PSO675G8755 Papaver somniferum HOM05D004257 ORTHO05D005202 4.4e-136 488.4 348 69.3
Manes.12G033300 Manihot esculenta HOM05D004257 ORTHO05D005202 5.7e-136 488.0 342 71.1
Solyc03g098140.3 Solanum lycopersicum HOM05D004257 ORTHO05D005202 7.5e-136 487.6 344 70.9
FvH4_2g21300 Fragaria vesca HOM05D004257 ORTHO05D005202 9.8e-136 487.3 346 71.1
Sopen03g028840 Solanum pennellii HOM05D004257 ORTHO05D005202 1.7e-135 486.5 344 70.6
FAN15G2746 Fragaria x ananassa HOM05D004257 ORTHO05D005202 2.2e-135 486.1 348 70.4
Lj5A229T68 Lonicera japonica HOM05D004257 ORTHO05D005202 2.2e-135 486.1 342 71.3
TWI18G0956 Tripterygium wilfordii HOM05D004257 ORTHO05D005202 2.2e-135 486.1 342 70.8
DCAR_014267 Daucus carota HOM05D004257 ORTHO05D005202 3.7e-135 485.3 342 71.3
QL09p039362 Quercus lobata HOM05D004257 ORTHO05D005202 3.7e-135 485.3 338 70.7
SGA_v2.0_scaffold90G27780 Striga asiatica HOM05D004257 ORTHO05D005202 3.7e-135 485.3 337 70.3
Ciclev10021043m.g Citrus clementina HOM05D004257 ORTHO05D005202 4.9e-135 485.0 339 70.2
Atru.chr5.1712 Acer truncatum HOM05D004257 ORTHO05D005202 6.3e-135 484.6 339 69.6
CiPaw.03G265600 Carya illinoinensis HOM05D004257 ORTHO05D005202 6.3e-135 484.6 345 71.3
MSTRG.23192 Avicennia marina HOM05D004257 ORTHO05D005202 8.3e-135 484.2 345 70.4
MELO3C012874.2 Cucumis melo HOM05D004257 ORTHO05D005202 8.3e-135 484.2 336 71.7
Gohir.A11G131450 Gossypium hirsutum HOM05D004257 ORTHO05D005202 8.3e-135 484.2 347 69.7
Cfa002439 Carpinus fangiana HOM05D004257 ORTHO05D005202 1.4e-134 483.4 343 71.4
Sc09g0004250 Simmondsia chinensis HOM05D004257 ORTHO05D005202 1.8e-134 483.0 343 69.7
Medtr7g097060 Medicago truncatula HOM05D004257 ORTHO05D005202 2.4e-134 482.6 343 71.1
ClCG07G001120 Citrullus lanatus HOM05D004257 ORTHO05D005202 3.1e-134 482.3 323 73.1
Cc04_g09710 Coffea canephora HOM05D004257 ORTHO05D005202 3.1e-134 482.3 327 72.8
vmacro10363 Vaccinium macrocarpon HOM05D004257 ORTHO05D005202 3.1e-134 482.3 351 69.5
Sed0014699 Sechium edule HOM05D004257 ORTHO05D005202 4.1e-134 481.9 340 70.3
CiPaw.04G187400 Carya illinoinensis HOM05D004257 ORTHO05D005202 7.0e-134 481.1 341 70.7
Gorai.007G147100 Gossypium raimondii HOM05D004257 ORTHO05D005202 7.0e-134 481.1 347 69.2
CANSAT01G0143 Cannabis sativa HOM05D004257 ORTHO05D005202 1.2e-133 480.3 345 69.9
AUR62004833 Chenopodium quinoa HOM05D004257 ORTHO05D005202 1.2e-133 480.3 339 70.2
AUR62040921 Chenopodium quinoa HOM05D004257 ORTHO05D005202 1.2e-133 480.3 339 69.9
Gohir.D11G137300 Gossypium hirsutum HOM05D004257 ORTHO05D005202 2.0e-133 479.6 347 68.9
PGR044G0150 Punica granatum HOM05D004257 ORTHO05D005202 3.5e-133 478.8 348 69.5
arahy.Tifrunner.gnm1.ann1.63G7RJ Arachis hypogaea HOM05D004257 ORTHO05D005202 4.5e-133 478.4 341 70.4
CANSAT35G1745 Cannabis sativa HOM05D004257 ORTHO05D005202 5.9e-133 478.0 351 69.2
HanXRQChr17g0542071 Helianthus annuus HOM05D004257 ORTHO05D005202 1.0e-132 477.2 344 70.3
MD05G1195500 Malus domestica HOM05D004257 ORTHO05D005202 1.0e-132 477.2 326 73.3
Prupe.8G222200 Prunus persica HOM05D004257 ORTHO05D005202 1.0e-132 477.2 359 68.0
Psat3g056800 Pisum sativum HOM05D004257 ORTHO05D005202 2.3e-132 476.1 344 69.8
Sed0007154 Sechium edule HOM05D004257 ORTHO05D005202 2.9e-132 475.7 346 69.1
Ca_08681_v3 Cicer arietinum L. HOM05D004257 ORTHO05D005202 3.8e-132 475.3 344 69.8
MSTRG.11529 Avicennia marina HOM05D004257 ORTHO05D005202 5.0e-132 474.9 338 69.2
MD10G1182800 Malus domestica HOM05D004257 ORTHO05D005202 5.0e-132 474.9 334 71.3
Lsat_1_v5_gn_3_39581 Lactuca sativa HOM05D004257 ORTHO05D005202 1.5e-131 473.4 341 69.8
VMungo1383G3387 Vigna mungo HOM05D004257 ORTHO05D005202 4.3e-131 471.9 323 71.8
A04p05160 Brassica napus HOM05D004257 ORTHO05D005202 5.6e-131 471.5 339 69.6
BraA04t16226Z Brassica rapa HOM05D004257 ORTHO05D005202 5.6e-131 471.5 339 69.6
BcaC02g09050 Brassica carinata HOM05D004257 ORTHO05D005202 7.3e-131 471.1 342 70.2
C04p37820 Brassica napus HOM05D004257 ORTHO05D005202 7.3e-131 471.1 342 70.2
BolC4t25358H Brassica oleracea HOM05D004257 ORTHO05D005202 7.3e-131 471.1 342 70.2
BcaC08g44693 Brassica carinata HOM05D004257 ORTHO05D005202 2.1e-130 469.5 348 68.1
C06p22290 Brassica napus HOM05D004257 ORTHO05D005202 2.1e-130 469.5 348 68.1
BolC6t37415H Brassica oleracea HOM05D004257 ORTHO05D005202 2.1e-130 469.5 348 68.4
Nitab4.5_0000936g0060 Nicotiana tabacum HOM05D004257 ORTHO05D005202 2.1e-130 469.5 330 71.2
BcaB02g07726 Brassica carinata HOM05D004257 ORTHO05D005202 2.8e-130 469.2 349 68.5
Lalb_Chr01g0019631 Lupinus albus HOM05D004257 ORTHO05D005202 3.6e-130 468.8 344 69.5
THA.LOC104825258 Tarenaya hassleriana HOM05D004257 ORTHO05D005202 4.7e-130 468.4 343 68.8
Lj1g0005279 Lotus japonicus HOM05D004257 ORTHO05D005202 6.1e-130 468.0 343 68.8
Haze_24645 Corylus avellana HOM05D004257 ORTHO05D005202 1.0e-129 467.2 369 66.1
Carub.0005s2129 Capsella rubella HOM05D004257 ORTHO05D005202 1.8e-129 466.5 325 71.1
arahy.Tifrunner.gnm1.ann1.BG7UA0 Arachis hypogaea HOM05D004257 ORTHO05D005202 4.0e-129 465.3 362 66.3
Sp5g07760 Schrenkiella parvula HOM05D004257 ORTHO05D005202 4.0e-129 465.3 325 70.8
AL5G35770 Arabidopsis lyrata HOM05D004257 ORTHO05D005202 6.8e-129 464.5 325 71.1
AT3G54690 Arabidopsis thaliana HOM05D004257 ORTHO05D005202 8.9e-129 464.2 325 71.1
Phvul.001G161500 Phaseolus vulgaris HOM05D004257 ORTHO05D005202 1.2e-128 463.8 323 70.3
Thhalv10010498m.g Eutrema salsugineum HOM05D004257 ORTHO05D005202 1.5e-128 463.4 325 70.5
Glyma.19G165400 Glycine max HOM05D004257 ORTHO05D005202 2.6e-128 462.6 343 67.1
CSS0001153 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 5.8e-128 461.5 344 68.9
Cpa.g.sc473.3 Carica papaya HOM05D004257 ORTHO05D005202 3.2e-126 455.7 337 67.4
CARHR164610 Cardamine hirsuta HOM05D004257 ORTHO05D005202 4.1e-126 455.3 325 69.8
TPR.G7131 Trifolium pratense HOM05D004257 ORTHO05D005202 2.7e-125 452.6 384 62.8
Aa31sc35G30 Aethionema arabicum HOM05D004257 ORTHO05D005202 3.5e-125 452.2 323 69.3
CSS0049630 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 6.0e-125 451.4 343 68.2
Zm00001eb207770 Zea mays HOM05D004257 ORTHO05D005202 1.7e-124 449.9 346 66.2
Zm00001eb232580 Zea mays HOM05D004257 ORTHO05D005202 2.5e-123 446.0 348 64.9
Mapoly0023s0132 Marchantia polymorpha HOM05D004257 ORTHO05D005202 1.6e-122 443.4 325 65.8
Os02g0158300 Oryza sativa ssp. japonica HOM05D004257 ORTHO05D005202 1.8e-121 439.9 345 65.2
GSVIVG01028350001 Vitis vinifera HOM05D004257 ORTHO05D005202 1.8e-121 439.9 339 65.8
AagrBONN_evm.TU.Sc2ySwM_344.3818 Anthoceros agrestis HOM05D004257 ORTHO05D005202 2.6e-120 436.0 323 66.3
HPP92_017366 Vanilla planifolia HOM05D004257 ORTHO05D005202 3.4e-120 435.6 344 64.5
SMO367G0216 Selaginella moellendorffii HOM05D004257 ORTHO05D005202 7.5e-120 434.5 321 65.4
AagrBONN_evm.TU.Sc2ySwM_344.1200 Anthoceros agrestis HOM05D004257 ORTHO05D005202 2.9e-119 432.6 319 66.1
CDE02G1046 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 4.9e-119 431.8 340 67.4
CDE04G1210 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 6.4e-119 431.4 298 72.8
Oeu023635.1 Olea europaea HOM05D004257 ORTHO05D005202 9.2e-118 427.6 336 65.5
HPP92_010358 Vanilla planifolia HOM05D004257 ORTHO05D005202 9.2e-118 427.6 344 64.2
BraA07t29902Z Brassica rapa HOM05D004257 ORTHO05D005202 1.3e-116 423.7 348 63.8
CSS0045427 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 6.6e-116 421.4 344 64.8
BcaC05g28242 Brassica carinata HOM05D004257 ORTHO05D005202 4.3e-115 418.7 347 63.1
BolC5t33007H Brassica oleracea HOM05D004257 ORTHO05D005202 4.3e-115 418.7 347 63.1
Pp3c5_14840 Physcomitrium patens HOM05D004257 ORTHO05D005202 4.0e-113 412.1 319 63.3
Pp3c23_13620 Physcomitrium patens HOM05D004257 ORTHO05D005202 5.2e-113 411.8 319 63.3
SalBow5G3197 Salvia bowleyana HOM05D004257 ORTHO05D005202 2.7e-109 399.4 292 68.2
SalBow5G4297 Salvia bowleyana HOM05D004257 ORTHO05D005202 2.7e-109 399.4 292 68.2
unitig_0.g1405 Utricularia gibba HOM05D004257 ORTHO05D005202 2.7e-109 399.4 323 65.6
unitig_61.g26464 Utricularia gibba HOM05D004257 ORTHO05D005202 9.5e-107 391.0 323 63.5
CBR_g20340 Chara braunii HOM05D004257 ORTHO05D005202 1.2e-106 390.6 334 58.1
EL10Ac4g09002 Beta vulgaris HOM05D004257 ORTHO05D005202 3.9e-100 369.0 271 66.8
ECA246G4101 Erigeron canadensis HOM05D004257 ORTHO05D005202 4.7e-98 362.1 231 77.1
CDE02G2420 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 1.4e-94 350.5 228 75.4
BcaB02g08451 Brassica carinata HOM05D004257 ORTHO05D005202 5.4e-86 322.0 196 79.1
C05p42800 Brassica napus HOM05D004257 ORTHO05D005202 5.4e-86 322.0 255 63.5
Pp3c24_11040 Physcomitrium patens HOM05D004257 ORTHO05D005202 2.1e-85 320.1 298 56.4
PSO470G0001 Papaver somniferum HOM05D004257 ORTHO05D005202 2.6e-72 276.6 215 64.2
CAN.G65.83 Capsicum annuum HOM05D004257 ORTHO05D005202 1.4e-70 270.8 249 57.8
SEGI_22917 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 3.3e-67 259.6 185 65.9
SEGI_29481 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 3.3e-67 259.6 185 65.9
SGA_v2.0_scaffold25G10776 Striga asiatica HOM05D004257 ORTHO05D005202 2.4e-65 253.4 185 70.3
AagrBONN_evm.TU.Sc2ySwM_228.5393 Anthoceros agrestis HOM05D004257 ORTHO05D005202 2.8e-58 229.9 165 67.3
A07p22230 Brassica napus HOM05D004257 ORTHO05D005202 9.4e-54 214.9 131 79.4
SEGI_04972 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 2.3e-52 210.3 122 80.3
Oeu036414.1 Olea europaea HOM05D004257 ORTHO05D005202 1.3e-50 204.5 123 78.9
Actinidia34751 Actinidia chinensis HOM05D000378 ORTHO05D005202 6.3e-50 202.2 119 79.0
BcaC07g39794 Brassica carinata HOM05D004257 ORTHO05D005202 4.2e-46 189.5 164 61.6
BolC8t50595H Brassica oleracea HOM05D004257 ORTHO05D005202 7.0e-41 172.2 164 56.1
C08p29840 Brassica napus HOM05D004257 ORTHO05D005202 2.2e-39 167.2 164 55.5
AagrBONN_evm.TU.Sc2ySwM_228.5394 Anthoceros agrestis HOM05D004257 ORTHO05D005202 1.3e-34 151.4 128 56.2
Peaxi162Scf00643g00656 Petunia axillaris HOM05D004257 ORTHO05D005202 7.5e-27 125.6 118 60.2
Lsat_1_v5_gn_8_28701 Lactuca sativa HOM05D004257 ORTHO05D005202 2.7e-24 117.1 92 66.3
EL10Ac4g09003 Beta vulgaris HOM05D004257 ORTHO05D005202 3.8e-23 113.2 70 77.1
Aqoxy1G04111 Aquilegia oxysepala HOM05D004257 ORTHO05D004515 7.2e-22 109.0 154 39.6
Rhsim05G0133300 Rhododendron simsii HOM05D004257 ORTHO05D005202 7.2e-22 109.0 92 64.1
Lj6g0021985 Lotus japonicus HOM05D004257 ORTHO05D236371 4.0e-20 103.2 78 64.1
Pp3c2_23370 Physcomitrium patens HOM05D004257 ORTHO05D005202 7.0e-17 92.4 118 43.2
Rhsim08G0010200 Rhododendron simsii HOM05D000535 ORTHO05D000427 1.7e-15 87.8 71 62.0
BcaB01g01067 Brassica carinata HOM05D004257 ORTHO05D092693 6.6e-15 85.9 78 57.7
Rhsim04G0042100 Rhododendron simsii HOM05D004257 ORTHO05D005202 2.4e-09 67.4 51 64.7
Lsat_1_v5_gn_6_26721 Lactuca sativa HOM05D004257 ORTHO05D230427 7.0e-09 65.9 42 78.6
CDE04G3164 Ceratophyllum demersum HOM05D004257 ORTHO05D130150 1.1e-06 58.5 36 66.7


User provided reference genes

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